NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss3550182           
Submitter
HandleSC_JCM
Submitter SNP IDAC005840.2_39282
RefSNP(rs#)rs25680
Submitted Batch ID21-SEP-2001c
Submitted DateSep 24, 2001
Publication Cited[1] Clone overlap SNPs detected from the public human 19-Mar-2001 draft sequence
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPSep 24 2001 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodOverlap_SNPs_by_SsahaSNP
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
seqversion:AC005840.2position:39282seqversion:AC006064.9position:-2579

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss3550182|allelePos=201|len=401|taxid=9606|alleles='C/T'|mol=Genomic
 CAAAGCTTTG GCCCCGTCAT CCTCCTTGCA CCCCCAAACC CGTCACCAGC CTTGCTCCCC
 CAGATGCTTG TCCATCGTCC CCACCTACAC ACCCTTGCCC ACCTCACCAG AGTTACAGTG
 CCGACAGCTC TCACAGTGGG GCCGGGTGTG GTGGTCAGGA GAGAAGGAGA CCCCCGGTAT
 GCAAGGATCA CACTGAGCAG
 Y
 CTTTCTATGC TGGTCACAGT CCTTCACGAG GAATGTTCCT GGGAGGAGAG GGTAAGGGAT
 CAAGGCCTGA GAAGGGCTGG TTCTCTGCCC TCTTCAAGGT GGTGCCTCCC CACAGCTGCA
 GGATTTCCCT CCTTGCTTGA GCTCAGTCTC ACCCTGCGCC TATTTACTGT ATTAACCCCA
 GTCCTCTCTC TTTCGCCACT

  Submitted Frequency for ss3550182 back to top
There is no frequency submission for ss3550182.


  dbSNP summary of Genotypes for ss3550182 back to top
No sufficient data to compute Hardy-weinberg probability for ss3550182.


  Submitted individual genotype for ss3550182 back to top
There is no individual genotype data for ss3550182.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement