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Submitted SNP(ss) Details: ss342382197           
Submitter
HandleNHLBI-ESP
Submitter SNP IDESP2500-chr14-20924117
RefSNP(rs#)rs61757709
Submitted Batch IDESP2500
Submitted DateMar 25, 2011
Publication CitedN.D.
First entry to dbSNPMar 25 2011 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		genomic
MethodEXOME CAPTURE AND SEQUENCING
Ascertainment Samplesize4518
PopulationN.D.
Allele
Observed AlleleA/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss342382197|allelePos=251|len=501|taxid=9606|alleles='A/C'|mol=Genomic
 GGGAATGAAA TCAGCCCTTC TTCCTAGAAG CTGCGGCGGG GGTGTTTGTC ATTCCCTTGA
 TGTACGGTAA GTACGGGCCG ACTCATTTTT GCAGGGGTTT GTGAAGAAGT CGCAGGAACC
 GTAGGCTTTC GTTGGGTCTA TAGTTAACGC CGGATCGCAG TTGGAAACCA CCAGCTTTTT
 GTCAGTATAT ATTACTCATT TTATAGAGCC AGAGGCCAAG AAGAGTAAGA CGGCCGCAAA
 GAAAAATGAC
 M
 AAGAGGCAGC AGGAGAGGGC CCAGCCCTGT ATGAGGACCC CCCAGATCAG AAAACCTCAC
 CCAGTGGCAA ACCTGCCACA CTCAAGATCT GCTCTTGGAA TGTGGATGGG CTTCGAGCCT
 GGATTAAGAA GAAAGGATTA GATGTGAGTG GAATTTGAGG GAAAGAGACA TTTTTTAGTA
 TTGAATGGTC TTAGGGTTTA GTCACCCCTT TTCTCCGTTT AGCCTTCAGG CTGTTTTATT
 TTTCTCCTGC

  Submitted Frequency for ss342382197 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
ESP_Cohort_Populations
- NORTH AMERICA 		13006A/A=0.99938500
A/C=0.00061500
C/C=0.00000000
ESP6500SINHLBI-ESP


  dbSNP summary of Genotypes for ss342382197 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
ESP_Cohort_Populations
- NORTH AMERICA 		45184518A=0.99977869
C=0.00022134A/A=0.99955732
A/C=0.00044267
C/C=0.00000000
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss342382197 back to top
There is no individual genotype data for ss342382197.

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