Submitted SNP(ss) Details: ss24560603

Submitted SNP(ss) Details: ss24560603

Submitter
Handle	PERLEGEN
Submitter SNP ID	afd4225902
RefSNP(rs#)	rs2228387
Submitted Batch ID	AFD_EUR_18-MAY-2004
Submitted Date	Aug 21, 2004
Publication Cited	N.D.
First entry to dbSNP	Aug 10 2004 12:00:00:000AM

Resource Links
GenBank Accession	NC_000011.5
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	AFD_CHIP_HYB
Ascertainment Samplesize	48
Population	AFD_EUR_PANEL

Allele
Observed Allele	C/T
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	Unknown

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	population count: 3
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 GGATGGAGAA GTTTCCAGGA GGTTCCAGTA AGGACTCTCC CGTCCTAGCT GTGGGGAGAC
 TCACCTCTGA GAGTCCAGTG TCAAACCA
 GCTGGGTGCC CG
 Y
 AGGAAGGAGG GT
 GGCCGAAGGT AGAAGGGACT CAGGGAAGTA GACGTCGGGA AAAGATCAGA CTCCAACAGG
 TGCTCTCCGA AGAACTGGTC AAAGAGGC

Submitted Frequency for ss24560603

There is no frequency submission for ss24560603.

dbSNP summary of Genotypes for ss24560603

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
AFD_EUR_PANEL - NORTH AMERICA	48	48	C=0.95833331	T=0.04166667	C/C=0.91666669 C/T=0.08333334	Pr(chiSq=0.004,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss24560603

There is no individual genotype data for ss24560603.

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