Submitted SNP(ss) Details: ss24153794

Submitted SNP(ss) Details: ss24153794

Submitter
Handle	PERLEGEN
Submitter SNP ID	afd4351735
RefSNP(rs#)	rs1395821
Submitted Batch ID	AFD_CHN_18-MAY-2004
Submitted Date	Aug 20, 2004
Publication Cited	N.D.
First entry to dbSNP	Aug 10 2004 12:00:00:000AM

Resource Links
GenBank Accession	NC_000004.6
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	AFD_CHIP_HYB
Ascertainment Samplesize	48
Population	AFD_CHN_PANEL

Allele
Observed Allele	C/T
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	Unknown

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	population count: 3
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 AAACATTAAC TCTACATCCA CTCAGCCAAC AAAGTCAGAA TACAGAGCTC ACATTTTCTG
 CTCATACACC AAGGTGTGTT GTATAGTT
 AGACCTTTAG TC
 Y
 CCTAAACAAC CA
 AGCAGACAGG CAAACCATTT TCTCCCAATT AATTGACAGA GGTCAATGAC ATTATACAAC
 AGGTATGGTT GAAACATTTA TTTTCCAG

Submitted Frequency for ss24153794

There is no frequency submission for ss24153794.

dbSNP summary of Genotypes for ss24153794

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
AFD_EUR_PANEL - NORTH AMERICA	46	46	T=0.84782606	C=0.15217391	T/T=0.78260869 C/T=0.13043478 C/C=0.08695652	Pr(chiSq=5.624,df=1) =0.020	Genotype Freq.
AFD_AFR_PANEL - NORTH AMERICA	46	46	T=0.56521738	C=0.43478259	T/T=0.39130434 C/T=0.34782609 C/C=0.26086956	Pr(chiSq=1.965,df=1) =0.200	Genotype Freq.
AFD_CHN_PANEL - NORTH AMERICA	48	48	T=0.54166669	C=0.45833334	C/T=0.66666669 T/T=0.20833333 C/C=0.12500000	Pr(chiSq=2.818,df=1) =0.100	Genotype Freq.

Submitted individual genotype for ss24153794

There is no individual genotype data for ss24153794.

Disclaimer Privacy statement