| Submitter | | Handle | KWOK | | Submitter SNP ID | OVLP-000925-70858 | | RefSNP(rs#) | rs662799 | | Submitted Batch ID | OVLP-000925-5-2 | | Submitted Date | Oct 06, 2000 | | Publication Cited | [1] A general approach to single-nucleotide polymorphism discovery
[2] Overlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms | | First entry to dbSNP | Oct 6 2000 12:00:00:000AM |
| | Resource Links | | GenBank Accession | AC007707.13
AP001481.2
| | Submitted Gene Name | N.D | | Submitted Gene ID | N.D. | | Submitted SNP Synonyms | N.D | | Submitted linkout | N.D |
| | | Allele | | Observed Allele | G/A | | Ancestral Allele | | | Allele Origin | N/A | | SNP Class | SNV | | CpG Code | nonCpG |
| | | Variation | | Frequency Submission | N.D. | | Genotype Summary | population count: 4 | | Genotype Submission | N.D. | | Haplotype | N.D. |
|
| Comment | | For parameters, see batch record.SNP-specific information (for explanation, see method record). SequenceLocalName1:AC007707 SequenceAccession1:AC007707 SequenceVersion1:13 SequenceContigName1:Contig1 SequenceContigPosition1:78654 SequenceLocalName2:AP001481 SequenceAccession2:AP001481 SequenceVersion2:2 SequenceContigName2:Contig10 SequenceContigPosition2:3919 PolyBayesConfidence:97 |
>gnl|dbSNP|ss1943495|allelePos=201|len=1360|taxid=9606|alleles='G/A'|mol=Genomic CCAGAACCCG AGCAGCCCCT GAAAGCTTCA CTACAGGTTC CGCAGGCATC CTCAGCCAGC
ATTCATAGGG TTAAAGACCA ACCACATCCC TCTTTATGAA ACAATCCTGG AACAAGCAAG
GGAAGCCAGG CAGGGTGAAG ATGAGATGGC AAGAGGCATC TGGGCCAGGG ACTCTGAGCC
CCAGGAACTG GAGCGAAAGT
R
AGATTTGCCC CATGAGGAAA AGCTGAACTC CACTCGCAGG GCCTCTGAGG AGAGCAAGCC
CAAATGCTCA GATCTTCTCT GATGACACAC CCACTCCGTC TACAGTACTC ATACACACGT
TCACAAGCTC CCGATTCTTG GTCCTAAATG CATCTTGAAT CAATCCCCTC TCCTCCATTT
CCACTACCAT CATTGCACCA GTTGTCTGTC ACCTTGATTG CATTCATAGC CTCCAACAGG
TCTTTCTACC ACACTCCTGC CCATTTAATT CATCCTCCAC TGTGGCTCAT CCTGACTCAT
TTCCAGTCTC ATCTGCTGCC ACATAAAACC ACAGCATTCC CTGAGCCTTT ATACAGGCTT
CCCTCTGCTT GAAATAGCCT ATCCCCTGGT GAATATATAT TCATTTTTTA GAGTTAGTTT
GTATTAGTTA GAATTAGACT TGGCTGCAAG GGACatatat atgtgtgtat atatatacac
acacacatgt atattttata ttcttgcata catatatgta tatatatgtg tgtgtgtata
tatacacata tatatataCA AGATACtgct cttaccactc atactgacat cccattggcc
acaagttagt cacatggcta cacttagctg ATATATATGT GTATATATAT ATGCAAGAGA
ATAGCTTAAA CAAAATGGAG TCTTATTTCC TTCTCATGTA AATGTAGGCC AGctcgggct
gcttttatct tgttgcacta ttatcatcaa caagacgctc atatccaagt tccagctgct
tcacctccag ctaccaagtt cacctcccag ggaacaggaa ggaggaaaag gagaaggaca
tgttccttcc ttttaaagac acatcccaga tattgccatt accacttgta ctgacatccc
attggccaca acttagtcac atggctacac ttagctgaaa aggaggctgg gaaatatagt
ttttattttg gatggctgta tgcctagctg aaaaaggact ctattactca ggaagaagag
aagaaaggat ttgagggaac agtagtagcc cctgctacaC AGCTCCAGTA TCACTCTGAA
TGCCTTCTTC GGCCTTCACC TTTTTCTGCT CTGGAGATAA ACTGATTCCA CATTATTCAC
ACAACACTGT ATATTCCTG
There is no frequency submission for ss1943495.
Population ID
-Class | Total
Sample
(2N) | Founder
(2N) | Major
Allele
Freq. | Minor
Allele
Freq. | Genotype
Freq. | HWE Goodness of Fit | Data
Source | | HapMap-CEU | 120 | 120 | A=0.98333335
| G=0.01666667 | A/A=0.96666664
A/G=0.03333334
| Pr(chiSq=0.001,df=1)
=1.000 | Genotype
Freq. | HapMap-HCB
- EAST ASIA | 90 | 90 | A=0.73333335
| G=0.26666668 | A/A=0.51111114
A/G=0.44444445
G/G=0.04444445
| Pr(chiSq=0.837,df=1)
=0.371 | Genotype
Freq. | | HapMap-JPT | 86 | 86 | A=0.70930231
| G=0.29069766 | A/G=0.48837209
A/A=0.46511629
G/G=0.04651163
| Pr(chiSq=1.460,df=1)
=0.251 | Genotype
Freq. | | HapMap-YRI | 120 | 120 | A=0.86666667
| G=0.13333334 | A/A=0.75000000
A/G=0.23333333
G/G=0.01666667
| Pr(chiSq=0.006,df=1)
=1.000 | Genotype
Freq. |
There is no individual genotype data for ss1943495.
|
