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Submitted SNP(ss) Details: ss108777649           
Submitter
Handle1000GENOMES
Submitter SNP IDCEU.trio.12.15.2008_1197905_chr5_6719922
RefSNP(rs#)rs3797179
Submitted Batch IDpilot_2_CEU_trio_final_release
Submitted DateMar 29, 2010
Publication CitedN.D.
First entry to dbSNPDec 16 2008 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodTRIO_CONSENSUS_CALLS
Ascertainment Samplesize4
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
depth.cov:90

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss108777649|allelePos=201|len=401|taxid=9606|alleles='G/A'|mol=Genomic
 AAATTTAAAG GTATTCTAAG GAGTAAGAAA AATTTAATCA TTTAAAAATA AATATTTTAT
 TTCTATATAA TGGTTTCTGT GAAATACACT TAACCTCTTC AGCCAACATC CCTTCATTGT
 GTGAGAACAC CCTGACCTCA CACATGTTCT TTCTGATGTC ACGGAGCCCA GCCTTGCTGC
 CCAGCCTGGT GGGGGGGCGC
 R
 TTTTCTCGGC ATCCTGCGGC AGTCCTGTGT TTCCCATCTC CCACCTGCCC TCTCGTGTTT
 GCCCATTTCA GGCTCTCCTG CTGTCATGTA CTCTGCCCTT GCCTTTTCGG GCCAGGGTGC
 CCATCTTCCC ACGGGCAGTT TCTGGGAGAG AGGCGCTCAC CTGCTATGTC ACTGTGCGGC
 GGCCAGTGCC GCTGGCCCAT

  Submitted Frequency for ss108777649 back to top
There is no frequency submission for ss108777649.


  dbSNP summary of Genotypes for ss108777649 back to top
No sufficient data to compute Hardy-weinberg probability for ss108777649.


  Submitted individual genotype for ss108777649 back to top
There is no individual genotype data for ss108777649.

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