NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss10105758           
Submitter
HandleBCM_SSAHASNP
Submitter SNP IDchr4.NT_022778.13_2972400
RefSNP(rs#)rs6813183
Submitted Batch IDBaylor-WGS-200306-1
Submitted DateJun 27, 2003
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPJun 27 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodBAYLOR-WGS-200306
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleG/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:56331977position:560quality:56

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss10105758|allelePos=201|len=891|taxid=9606|alleles='G/C'|mol=Genomic
 TTCCCCTCAA TAGCACCCAT TAGTATTCCG TTGTACCTTG TATCCCTCAA CTTACCTTTC
 AAGGTTTCAC TTGGTGGTTA CTTCTTCTTG CCCTCCCTCA CCTTTCCAGT TGTTCTGTAT
 TCCCATAATA CGTCATACAC TTTCCTGTCA CAACAGCTGA ATTGTTGAAT TCATATGATC
 TTTTATGCAC CTCGTCCCAA
 S
 CCCATGAGGG CAAGAGCTGT ATAAGATTCA TCTTTTATTT CCTCAGGAAA TAACAAGTGT
 GCAAAGAAGC ATTGAAAGAA TGAAACATTT TTGCTATGAT TTATTCACTT TAAGATAAAG
 AGAGGgcctg tagccctagc tacttgggaa gctgaaacag gaggactgct tgaggccagg
 agttcaaggc tgcagttagc tgtgattctg ctgctgcact ccagcttggg aaacagcaaa
 aaaaaaaaaa aaaaaaaaaa aaaaaaaAAA GAATAGAGGG TCAGAAAATA ATTTGTTATA
 GCAGttttta ttttacttta aaaagatact ttttatattt ttactataaa catatttatt
 tattcattta ttCATTAAag acaaggtctt actctgtcac ccaggctgaa gtgctgtggc
 atggccatgt ctcactataa cctcaacctc tcgggatgaa acaattctcc cacctcaacc
 cctcaagtag cagggaccac tgtgggccct gagaaatttt ttttttcttt aattttgtag
 acatagggct tccctatgtt gcccaggctg gtctccagct cctgagctca agtgatcctc
 ctgcactggc ctcccgaagt gctgggatta cagatgtgag ccaccatgcc cagccTACAA
 ATATTTTTAT AACCTATTTC ACTTCAGTTT

  Submitted Frequency for ss10105758 back to top
There is no frequency submission for ss10105758.


  dbSNP summary of Genotypes for ss10105758 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU120120C=0.65833336
G=0.34166667C/G=0.44999999
C/C=0.43333334
G/G=0.11666667
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
HapMap-HCB
EAST ASIA
9090C=0.53333336
G=0.46666667C/G=0.53333336
C/C=0.26666668
G/G=0.20000000
Pr(chiSq=0.230,df=1)
=0.655
Genotype
Freq.
HapMap-JPT8888C=0.50000000C/G=0.63636363
G/G=0.18181819
C/C=0.18181819
Pr(chiSq=3.273,df=1)
=0.100
Genotype
Freq.
HapMap-YRI120120C=0.61666667
G=0.38333333C/G=0.50000000
C/C=0.36666667
G/G=0.13333334
Pr(chiSq=0.199,df=1)
=0.752
Genotype
Freq.

  Submitted individual genotype for ss10105758 back to top
There is no individual genotype data for ss10105758.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement