Submitted SNP(ss) Details: ss8819830

Submitted SNP(ss) Details: ss8819830

Submitter
Handle	SNP500CANCER
Submitter SNP ID	PPARA-06
RefSNP(rs#)	rs1800206
Submitted Batch ID	08272003_update
Submitted Date	Oct 28, 2003
Publication Cited	N.D.
First entry to dbSNP	May 30 2003 12:00:00:000AM

Resource Links
GenBank Accession	NT_011523.8
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	PPARA-06

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	SEQUENCING
Ascertainment Samplesize	204
Population	P1

Allele
Observed Allele	C/G
Ancestral Allele	N.D.
Allele Origin	G:Germline C:Germline
SNP Class	SNV
CpG Code	Unknown

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Comment

Platform: Sequencing Primer F: CTGGGATTACAGGCATGAT, Temp: 55.88, GC Content:47.37, Product Size: 400 Primer R: GAAGCACATTCATCCATAGC, Temp: 55.75, GC Content:45
Platform: TaqMan Forward primer: ACAAGTGCCTTTCTG, Amount: 900 nM Reverse primer: CAAGTGCGTTTCTG, Amount: 900 nM Probe 1: CAGAAACAAATGCCAGTATTGTCGAT, Amount: 200 nM Probe 2: CCTTACCTACCGTTGTGTGACATC, Amount: 200 nM Annealing temperature: 60 C

Fasta sequence (Legend)

 GGTTTCTCAG TGGCCCAGGT CTTTAAATCC ACTGTGTRTT ACCCTCACAG GGCTTCTTTC
 GGCGAACGAT TCGACTCAAG CTGGTGTATG ACAAGTGCGA CCGCAGCTGC AAGATCCAGA
 AAAAGAACAG AAACAAATGC CAGTATTGTC GATTTCACAA GTGC
 S
 TTTCTGTCGG GATGTCACAC AACGGTAGGT AAGGTGGCCC TGCACATTTT CCCAGTTCGT
 TCCTCAGTTC CCCTTCCTTG CTCCAAGGGA ACAGATCAAG CTATGGATGA ATGTGCTTCA
 ACATTTCACA CCCAAGTCAT TTTGTAATCA GAGTGGCCTA AGAAAATAAA AGTCGCCCAG
 GCGCGGTGGT

Submitted Frequency for ss8819830

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
PAC1 - MULTI-NATIONAL	48	C=1.00000000	G=0.00000000		C/C=1.00000000 C/G=0.00000000		08272003	SNP500CANCER
AFR1 - MULTI-NATIONAL	48	C=0.97899997	G=0.02100000	0.041 +/-0.056	C/C=0.95800000 C/G=0.04200000	0.042	08272003	SNP500CANCER
P1 - MULTI-NATIONAL	202	C=0.98500001	G=0.01500000	0.030 +/-0.023	C/C=0.97000003 C/G=0.03000000	0.030	08272003	SNP500CANCER
CAUC1 - MULTI-NATIONAL	62	C=0.96799999	G=0.03200000	0.062 +/-0.059	C/C=0.93500000 C/G=0.06500000	0.065	08272003	SNP500CANCER
HISP1 - MULTI-NATIONAL	44	C=1.00000000	G=0.00000000		C/C=1.00000000 C/G=0.00000000		08272003	SNP500CANCER

dbSNP summary of Genotypes for ss8819830

No sufficient data to compute Hardy-weinberg probability for ss8819830.

Submitted individual genotype for ss8819830

There is no individual genotype data for ss8819830.

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