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Submitted SNP(ss) Details: ss86217048           
Submitter
HandleRSG_JCVI
Submitter SNP IDNR3C2-051197_051198-C_G
RefSNP(rs#)rs1040288
Submitted Batch IDNR3C2-R44_ISDP1-20071210-F0
Submitted DateDec 12, 2007
Publication CitedN.D.
First entry to dbSNPDec 12 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodMETHOD-A
Ascertainment Samplesize522
PopulationR44_ISDP1
Allele
Observed AlleleG/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss86217048|allelePos=256|len=511|taxid=9606|alleles='G/C'|mol=Genomic
 GAACAGCATC TCTTTTTAAC TCTTTGTGAG GTATTAACTA AATAACCTCT ACAGTCTCCA
 TAGCTATCAT TTATGGATTA CCCGCCACCC ACCAGAGCTA AATTTCTTCT TGCTAAATCT
 CAAAATGCCC TGTGAGGAAT TATTCTCATA TTCATGATAA GGAATTTTAG GTACATGTGA
 AGCCAGGATC CAAACCCAGG TTTTTTACTT CAAAACTCAG GCCTTCTCCT TTCTCTGTGT
 GCCAAGCTGA GTAAT
 S
 ATTTTTGGCC CTTTTTTCCA GAGTCATACA ACTCTATTCA GTACCTCCAG TGTTTTGTTA
 TTACAGTCAC TCATTTGTTT ATTCTTTGCT CCCCATTATG TGGTAACATT TTGTGTTTTC
 AAATTCCATT GCTGTTTCCA TTGCATGAAA TCGAATTCTC TAAATGAAGA GTACTGAGCA
 CTCAATATAG CTTGAAATTT CAAGAAAATA GGTCATCTTG AAAATGCATT TTATATCACA
 TCATTTTTGC ACAAT

  Submitted Frequency for ss86217048 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
R44_ISDP1522G=0.52107298
C=0.47892699
NR3C2-R44_ISDP1-20071210-F0RSG_JCVI


  dbSNP summary of Genotypes for ss86217048 back to top
No sufficient data to compute Hardy-weinberg probability for ss86217048.


  Submitted individual genotype for ss86217048 back to top
There is no individual genotype data for ss86217048.

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