Submitted SNP(ss) Details: ss4337587

Submitted SNP(ss) Details: ss4337587

Submitter
Handle	SC_JCM
Submitter SNP ID	AC018693.8_117920
RefSNP(rs#)	rs3099950
Submitted Batch ID	11-FEB-2002
Submitted Date	Feb 19, 2002
Publication Cited	[1] Clone overlap SNPs detected from the public human 23-Sept-2001 draft sequence [2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNP	Feb 19 2002 12:00:00:000AM

Resource Links
GenBank Accession	AC018693 AC092833
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	Overlap_SNPs_by_SsahaSNP
Ascertainment Samplesize	2
Population	N.D.

Allele
Observed Allele	G/A
Ancestral Allele
Allele Origin	N/A
SNP Class	SNV
CpG Code	nonCpG

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	population count: 9
Genotype Submission	N.D.
Haplotype	N.D.

Comment
seqversion:AC018693.8position:117920seqversion:AC092833.3position:166884unfin_quality:90

Fasta sequence (Legend)

 GTGGtttttt tttttttttt tttggtttgt ttgttttttt GGTAGGATAT GAAAGCAGGA
 TGCTGGGTTT AAAAGCAAAG CTTGAAAGTA GAGGATATAA TCTTCAGACA TAGTATATAT
 TATGCTAGAA AATCTTATAT CTGGACTGTA AATTATTCAT CTTTGTTAAT GGAAAACTTA
 TTTTCTACTA TTGCAGGGTG
 R
 AAGGTGAAGG GGAATATACT GATATCCAAG GACTAGAATG GAGTGGTAAC TTTCATTTTA
 CAGCTGCTCC AGACCTGAAA TTAAAGCTTC ACATGTAGAT GTGATGTTAA ATTAAAGTTG
 AAATGTAGTA ATTGAAGCTT TTAGTTGTAA GGAAAGCAAC TTAATCTGTT ATTTGAAATG
 ACTTCATACA CTACCCCTAT

Submitted Frequency for ss4337587

There is no frequency submission for ss4337587.

dbSNP summary of Genotypes for ss4337587

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
HapMap-CEU	226	226	G=0.83185840	A=0.16814159	G/G=0.68141592 A/G=0.30088496 A/A=0.01769911	Pr(chiSq=0.646,df=1) =0.439	Genotype Freq.
HapMap-HCB - EAST ASIA	90	90	G=0.98888886	A=0.01111111	G/G=0.97777778 A/G=0.02222222	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.
HAPMAP-ASW	98	98	G=0.95918369	A=0.04081633	G/G=0.91836733 A/G=0.08163265	Pr(chiSq=0.007,df=1) =1.000	Genotype Freq.
HAPMAP-GIH	176	176	G=0.84659094	A=0.15340909	G/G=0.71590906 A/G=0.26136363 A/A=0.02272727	Pr(chiSq=0.003,df=1) =1.000	Genotype Freq.
HAPMAP-MEX	100	100	G=0.94000000	A=0.06000000	G/G=0.88000000 A/G=0.12000000	Pr(chiSq=0.024,df=1) =1.000	Genotype Freq.
HAPMAP-TSI	176	176	G=0.90340906	A=0.09659091	G/G=0.81818181 A/G=0.17045455 A/A=0.01136364	Pr(chiSq=0.048,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss4337587

There is no individual genotype data for ss4337587.

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