Submitted SNP(ss) Details: ss234199692

Submitted SNP(ss) Details: ss234199692

Submitter
Handle	1000GENOMES
Submitter SNP ID	pilot_1_CEU_3804321_chr7_141319073
RefSNP(rs#)	rs10246939
Submitted Batch ID	phase_1_vqsr_v2b_sites_june_2011
Submitted Date	Jul 20, 2011
Publication Cited	N.D.
First entry to dbSNP	May 1 2010 12:00:00:000AM

Resource Links
GenBank Accession	NC_000007
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	LOW_COVERAGE
Ascertainment Samplesize	120
Population	N.D.

Allele
Observed Allele	T/C
Ancestral Allele	N.D.
Allele Origin	T:Germline C:Germline
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status	Not Validated
HWE Goodness of Fit	not applicable
Homozygote Detected
PCR Confirmed
In Expressed Sequence

Variation
Frequency Submission	population count: 1
Genotype Summary	N.D.
Genotype Submission	N.D.
Haplotype	N.D.

Comment
depth.cov:268

Fasta sequence (Legend)

 TCAGAGTTGT ATTCCTGAAG AATCAGAGGC ATATTTATGA AGACTCACAG GCGTATTAAT
 GAAGAGCTCA TTTCATGTCC ATTCTCAGCA CAGTGTCCGG GAATCTGCCT TGTGGTCGGC
 TCTTACCTTC AGGCTGCTCT GAGCCCAGAG CAGAATGGTC ATCACAGCTC TCCTCAACTT
 GGCATTGCCT GAGATCAGGA
 Y
 GGCTGCATGC CCAGAGGGAC AAGCTGCCAT TATCCCAACA CAAACCATCA CCCCTATTTT
 GTCGCGCCAC AGAATCAGTA GGGGCACAGA GATGAAGGCA GCACAGGATG ATATCACAAA
 GAAGCAGAAA AAGGAGACAA GAGACTTGAG GGCTTTAATG TGGGCCTCCA GGCTGGGGTC
 ACGAGAGTTT CTGGTATAGA

Submitted Frequency for ss234199692

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
pilot_1_CEU_low_coverage_panel - NORTH AMERICA	120	T=0.56666702	C=0.43333301				pilot_1_CEU_mar_2010	1000GENOMES

dbSNP summary of Genotypes for ss234199692

No sufficient data to compute Hardy-weinberg probability for ss234199692.

Submitted individual genotype for ss234199692

There is no individual genotype data for ss234199692.

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