NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss168243995           
Submitter
HandleCOMPLETE_GENOMICS
Submitter SNP IDNA07022_36_chr19_50103781
RefSNP(rs#)rs429358
Submitted Batch IDNA07022_snpassay_chr19
Submitted DateSep 30, 2009
Publication Cited[1] Human Genome Sequencing Using Unchained Base Reads on Self-assembling DNA Nanoarrays
First entry to dbSNPSep 30 2009 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCOMPLETE GENOMICS SEQUENCING
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginT:Germline C:Germline
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 1
Genotype Submissionindividual count: 1
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss168243995|allelePos=251|len=501|taxid=9606|alleles='C/T'|mol=Genomic
 CTCTTGGGTC TCTCTGGCTC ATCCCCATCT CGCCCGCCCC ATCCCAGCCC TTCTCCCCGC
 CTCCCACTGT GCGACACCCT CCCGCCCTCT CGGCCGCAGG GCGCTGATGG ACGAGACCAT
 GAAGGAGTTG AAGGCCTACA AATCGGAACT GGAGGAACAA CTGACCCCGG TGGCGGAGGA
 GACGCGGGCA CGGCTGTCCA AGGAGCTGCA GGCGGCGCAG GCCCGGCTGG GCGCGGACAT
 GGAGGACGTG
 Y
 GCGGCCGCCT GGTGCAGTAC CGCGGCGAGG TGCAGGCCAT GCTCGGCCAG AGCACCGAGG
 AGCTGCGGGT GCGCCTCGCC TCCCACCTGC GCAAGCTGCG TAAGCGGCTC CTCCGCGATG
 CCGATGACCT GCAGAAGCGC CTGGCAGTGT ACCAGGCCGG GGCCCGCGAG GGCGCCGAGC
 GCGGCCTCAG CGCCATCCGC GAGCGCCTGG GGCCCCTGGT GGAACAGGGC CGCGTGCGGG
 CCGCCACTGT

  Submitted Frequency for ss168243995 back to top
There is no frequency submission for ss168243995.


  dbSNP summary of Genotypes for ss168243995 back to top
No sufficient data to compute Hardy-weinberg probability for ss168243995.


  Submitted individual genotype for ss168243995 back to top

Submitter:COMPLETE_GENOMICSBatch:NA07022_snpinduse_chr19
  
Population ID
-Class
Individual By Genotype
C/T
CEU
NORTH AMERICA
NA07022
Sample(N): 11

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement