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Submitted SNP(ss) Details: ss870163           
Submitter
HandleDEBNICK
Submitter SNP IDae3937
RefSNP(rs#)rs429358
Submitted Batch IDMDECODE-APOE-SNPS
Submitted DateAug 29, 2000
Publication Cited[1] Sequence Diversity and Large-scale Typing of SNPs in the Human Apolipoprotein E Gene
[2] Apolipoprotein E Variation at the Sequence Haplotype Level: Implications for the Origin and Maintenance of a Major Human Polymorphism
First entry to dbSNPAug 29 2000 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodMETHOD-A
Ascertainment Samplesize192
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral Allele
Allele OriginT:Germline C:Germline
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 4
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss870163|allelePos=51|len=101|taxid=9606|alleles='C/T'|mol=Genomic
 AGGAGCTGCA GGCGGCGCAG GCCCGGCTGG GCGCGGACAT GGAGGACGTG
 Y
 GCGGCCGCCT GGTGCAGTAC CGCGGCGAGG TGCAGGCCAT GCTCGGCCAG

  Submitted Frequency for ss870163 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
MDECODE-2
EUROPE
48T=0.76999998
C=0.23000000
0.354 +/-0.093MDECODE-APOE-SNPSDEBNICK
MDECODE-1
NORTH AMERICA
48T=0.88000000
C=0.12000000
0.211 +/-0.101MDECODE-APOE-SNPSDEBNICK
MDECODE-4
CENTRAL/SOUTH AMERICA
48T=0.89999998
C=0.10000000
0.180 +/-0.098MDECODE-APOE-SNPSDEBNICK
MDECODE-3
NORTH AMERICA
48T=0.89999998
C=0.10000000
0.180 +/-0.098MDECODE-APOE-SNPSDEBNICK


  dbSNP summary of Genotypes for ss870163 back to top
No sufficient data to compute Hardy-weinberg probability for ss870163.


  Submitted individual genotype for ss870163 back to top
There is no individual genotype data for ss870163.

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