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Submitted SNP(ss) Details: ss76884559           
Submitter
HandleSI_EXO
Submitter SNP IDNT_011109.15_17680159
RefSNP(rs#)rs429358
Submitted Batch IDSI_EXO_20070430
Submitted DateSep 20, 2007
Publication CitedN.D.
First entry to dbSNPSep 20 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodSI_EXOSEQ_1
Ascertainment Samplesize38
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginT:Germline C:Germline
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 3
Genotype Submissionindividual count: 351
HaplotypeN.D.
Comment
ExoSeq_class:MHe2Estimated_frequency:.1184Minor_allele:C

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss76884559|allelePos=401|len=801|taxid=9606|alleles='C/T'|mol=Genomic
 CCTCGGCCTC CCAAAGTGCT GGGATTAGAG GCATGAGCCA CCTTGCCCGG CCTCCTAGCT
 CCTTCTTCGT CTCTGCCTCT GCCCTCTGCA TCTGCTCTCT GCATCTGTCT CTGTCTCCTT
 CTCTCGGCCT CTGCCCCGTT CCTTCTCTCC CTCTTGGGTC TCTCTGGCTC ATCCCCATCT
 CGCCCGCCCC ATCCCAGCCC TTCTCCCCGC CTCCCACTGT GCGACACCCT CCCGCCCTCT
 CGGCCGCAGG GCGCTGATGG ACGAGACCAT GAAGGAGTTG AAGGCCTACA AATCGGAACT
 GGAGGAACAA CTGACCCCGG TGGCGGAGGA GACGCGGGCA CGGCTGTCCA AGGAGCTGCA
 GGCGGCGCAG GCCCGGCTGG GCGCGGACAT GGAGGACGTG
 Y
 GCGGCCGCCT GGTGCAGTAC CGCGGCGAGG TGCAGGCCAT GCTCGGCCAG AGCACCGAGG
 AGCTGCGGGT GCGCCTCGCC TCCCACCTGC GCAAGCTGCG TAAGCGGCTC CTCCGCGATG
 CCGATGACCT GCAGAAGCGC CTGGCAGTGT ACCAGGCCGG GGCCCGCGAG GGCGCCGAGC
 GCGGCCTCAG CGCCATCCGC GAGCGCCTGG GGCCCCTGGT GGAACAGGGC CGCGTGCGGG
 CCGCCACTGT GGGCTCCCTG GCCGGCCAGC CGCTACAGGA GCGGGCCCAG GCCTGGGGCG
 AGCGGCTGCG CGCGCGGATG GAGGAGATGG GCAGCCGGAC CCGCGACCGC CTGGACGAGG
 TGAAGGAGCA GGTGGCGGAG GTGCGCGCCA AGCTGGAGGA

  Submitted Frequency for ss76884559 back to top
There is no frequency submission for ss76884559.


  dbSNP summary of Genotypes for ss76884559 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-JPT8888T=0.98863637
C=0.01136364T/T=0.97727275
C/T=0.02272727
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
HapMap-YRI120120T=0.98333335
C=0.01666667T/T=0.96666664
C/T=0.03333334
Pr(chiSq=0.001,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss76884559 back to top

Submitter:CSHL-HAPMAPBatch:r27_ch19_JPT_illumina:golden_gate_1.0.0
  
Population ID
-Class
Individual By Genotype
C/TN/NT/T
HapMap-JPTNA18975NA19012NA18939NA18946NA18954NA18942NA18940NA18951NA18943
NA18955NA18957NA18962NA18963NA18947NA18944NA18945NA18949
NA18977NA18979NA18993NA19001NA18948NA18952NA18956NA18964
NA19002NA19009NA19010NA19054NA18953NA18968NA18959NA18969
NA19055NA19056NA19057NA19058NA18960NA18961NA18972NA18965
NA19059NA19060NA19062NA19063NA18973NA18966NA18967NA18976
NA19064NA19065NA19066NA19067NA18978NA18970NA18980NA18995
NA19068NA19070NA19072NA19074NA18981NA18971NA18974NA18987
NA19075NA19076NA19077NA19078NA18990NA18991NA18994NA18992
NA19079NA19080NA19081NA19083NA18997NA18998NA19000NA19005
NA19084NA19085NA19086NA19087NA18999NA19007NA19003
NA19088
Sample(N): 8914543

Submitter:CSHL-HAPMAPBatch:r27_ch19_CHB_illumina:golden_gate_1.0.0
  
Population ID
-Class
Individual By Genotype
C/TN/NT/T
HapMap-HCB
EAST ASIA
NA18526NA18524NA18529NA18558NA18532NA18561NA18562NA18537
NA18603NA18540NA18605NA18542NA18545NA18572NA18547NA18609
NA18550NA18608NA18552NA18611NA18555NA18564NA18566NA18563
NA18570NA18612NA18571NA18620NA18621NA18594NA18622NA18573
NA18623NA18576NA18577NA18624NA18579NA18632NA18582NA18633
NA18635NA18592NA18636NA18593NA18637
Sample(N): 450045
  
Population ID
-Class
Individual By Genotype
C/TN/NT/T
HAPMAP-CHBNA18534NA18536NA18543NA18544NA18546NA18548NA18557NA18559
NA18595NA18596NA18597NA18599NA18602NA18610NA18613NA18614
NA18615NA18616NA18617NA18618NA18619NA18626NA18627NA18628
NA18630NA18631NA18634NA18638NA18639NA18640NA18641NA18642
NA18643NA18645NA18647NA18740NA18745NA18747NA18748NA18749
NA18757
Sample(N): 410410

Submitter:CSHL-HAPMAPBatch:r27_ch19_YRI_illumina:golden_gate_1.0.0
  
Population ID
-Class
Individual By Genotype
C/TN/NT/T
HapMap-YRINA18504NA18484NA18486NA18488NA18485NA18500NA18502NA18501NA18503
NA19201NA18487NA18489NA18497NA18498NA18505NA18506NA18508NA18507
NA18499NA19109NA19107NA19108NA18860NA18858NA18859NA18515
NA18869NA18868NA18867NA18509NA18517NA18516NA18521NA18523
NA18511NA18510NA18518NA18519NA18522NA18872NA18870NA18871
NA18520NA18875NA18874NA18873NA18854NA18852NA18853NA18857
NA18911NA18910NA18909NA18930NA18855NA18856NA18863NA18861
NA18917NA18916NA18925NA18923NA18862NA18914NA18912NA18913
NA18924NA19199NA19198NA19197NA19094NA19093NA19092NA19103
NA18935NA18934NA18933NA19180NA19102NA19101NA19139NA19137
NA19178NA19179NA19186NA19184NA19138NA19202NA19200NA19173
NA19185NA19097NA19096NA19095NA19172NA19171NA19205NA19204
NA19175NA19176NA19183NA19181NA19203NA19211NA19209NA19210
NA19182NA19224NA19226NA19225NA19208NA19206NA19207NA19161
NA19123NA19121NA19122NA19151NA19159NA19160NA19221NA19222
NA19150NA19149NA19148NA19146NA19223NA19120NA19116NA19119
NA19147NA19115NA19113NA19114NA19142NA19140NA19141NA19154
NA19258NA19256NA19257NA19174NA19152NA19153NA19145NA19143
NA19117NA19118NA19215NA19213NA19144NA19129NA19127NA19128
NA19214NA19191NA19189NA19190NA19132NA19131NA19130NA19100
NA19237NA19236NA19235NA19249NA19099NA19098NA19194NA19193
NA19248NA19247NA19192NA19240NA19238NA19239
Sample(N): 17628688

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