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Submitted SNP(ss) Details: ss71640578           
Submitter
HandleSHGC
Submitter SNP ID1914
RefSNP(rs#)rs679620
Submitted Batch IDF_mmp3_2.2007.shgc
Submitted DateApr 27, 2007
Publication CitedN.D.
First entry to dbSNPApr 27 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodSEQUENCE
Ascertainment Samplesize48
PopulationF24
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss71640578|allelePos=301|len=601|taxid=9606|alleles='G/A'|mol=Genomic
 GCAGCACTGG GGCTTAAGGC ACATGAGTAA CAAGTGGAGA GTGGATGAAC CATATCTTGC
 TTTGGAACAG CTTCAGTTTT TTTTTTAATG CAACGTAATT TTAGCTAAAT ATTTGTGTTG
 CTAGTATCAT ATTATAAAAT TTGGCATTAT TTCAGCAAGC TAGAGAAATA CTCCAAATAG
 ATTAAGAAGT GAGCAACTGC AAAAACTTAC TATAAATAGA TAGCTATAGT AAAAATTGTA
 AGAGTGACCT AAAAACTATA CTTATTCTGT TAGAAATATC TAGAAAACTA CTACGACCTC
 R
 AAAAAGATGT GAAACAGTTT GTTAGGAGAA AGGACAGTGG TCCTGTTGTT AAAAAAATCC
 GAGAAATGCA GAAGTTCCTT GGATTGGAGG TGACGGGGAA GCTGGACTCC GACACTCTGG
 AGGTGATGCG CAAGCCCAGG TGTGGAGTTC CTGANGTTGG TCACTTCAGA ACNTTTCCTG
 GCATCCCGAA GTGGAGGAAA ACCCACCTTA CATACAGGTA ATGGTTCAGA GGGGTTTTCA
 CATAAGATTG GAATTTTATA AACTATATCA TAGGAGAAAA TAGCATCTGC TTCAATTTTT

  Submitted Frequency for ss71640578 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
F24
NORTH AMERICA
48A=0.54000002
G=0.46000001
F_mmp3_2.2007.shgcSHGC


  dbSNP summary of Genotypes for ss71640578 back to top
No sufficient data to compute Hardy-weinberg probability for ss71640578.


  Submitted individual genotype for ss71640578 back to top
There is no individual genotype data for ss71640578.

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