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Submitted SNP(ss) Details: ss66858970           
Submitter
HandleEGP_SNPS
Submitter SNP IDNAT2_010873
RefSNP(rs#)rs1208
Submitted Batch IDNAT2-JPT-041206
Submitted DateNov 09, 2006
Publication Cited[1] NIEHS Envirommental Genome Project (EGP) - (N01 ES-15478)
First entry to dbSNPNov 9 2006 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-GENO-ILLUMINA
Ascertainment Samplesize24
PopulationJPT_GENO_PANEL
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginG:Germline A:Germline
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 6
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss66858970|allelePos=101|len=201|taxid=9606|alleles='A/G'|mol=Genomic
 GTGGGCTTCA TCCTCACCTA TAGAAAATTC AATTATAAAG ACAATACAGA TCTGGTCGAG
 TTTAAAACTC TCACTGAGGA AGAGGTTGAA GAAGTGCTGA
 R
 AAATATATTT AAGATTTCCT TGGGGAGAAA TCTCGTGCCC AAACCTGGTG ATGRATCCCT
 TACTATTTAG AATAAGGAAC AAAATAAACC CTTGTGTATG

  Submitted Frequency for ss66858970 back to top
There is no frequency submission for ss66858970.


  dbSNP summary of Genotypes for ss66858970 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HSP_GENO_PANEL5454A=0.53703701
G=0.46296296A/G=0.48148149
A/A=0.29629630
G/G=0.22222222
Pr(chiSq=0.027,df=1)
=1.000
Genotype
Freq.
CEU_GENO_PANEL6868A=0.51470590
G=0.48529410A/G=0.55882353
A/A=0.23529412
G/G=0.20588236
Pr(chiSq=0.478,df=1)
=0.527
Genotype
Freq.
AAM_GENO_PANEL122122A=0.68032789
G=0.31967214A/A=0.49180329
A/G=0.37704918
G/G=0.13114753
Pr(chiSq=1.081,df=1)
=0.317
Genotype
Freq.
CHB_GENO_PANEL9090A=0.97777778
G=0.02222222A/A=0.95555556
A/G=0.04444445
Pr(chiSq=0.001,df=1)
=1.000
Genotype
Freq.
YRI_GENO_PANEL120120A=0.58333331
G=0.41666666A/G=0.50000000
A/A=0.33333334
G/G=0.16666667
Pr(chiSq=0.049,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss66858970 back to top
There is no individual genotype data for ss66858970.

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