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Submitted SNP(ss) Details: ss48428317           
Submitter
HandleAPPLERA_GI
Submitter SNP IDhCV2025977
RefSNP(rs#)rs6897932
Submitted Batch ID1-1
Submitted DateNov 30, 2005
Publication Cited[1] Natural Selection on Protein Coding Genes in the Human Genome
First entry to dbSNPSep 28 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodAGI_ASP PIPELINE
Ascertainment Samplesize76
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginT:Germline C:Germline
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss48428317|allelePos=301|len=601|taxid=9606|alleles='C/T'|mol=Genomic
 TGGTAGAAAG TCAAGAAGGG AAGAGAGCAT TGGTACCTTT GATGCTAGAT CACGTTTACA
 TTTCAAGTGG CAGATGCTCT GGGCCTGGTC ACCCAAGTCA ATGCCTTTTA AACCAAAATC
 CCTCCATAAA GCTGTCAAAT ATGTCTCTTA ACTGAAAAGC AACTTTCAGG AAATAATAAG
 TGGGCCCACA TTACTAAGTA AATGCAAAGC ACCCTGAGAC CCTACCCCCA CTGCATGGCT
 ACTGAATGCT CACCACAATC TATTCTTGCT TTCCAGGGGA GATGGATCCT ATCTTACTAA
 Y
 CATCAGCATT TTGAGTTTTT TCTCTGTCGC TCTGTTGGTC ATCTTGGCCT GTGTGTTATG
 GAAAAAAAGG TGACCTTCTT CAACTAATAA AGAGGGTGAT TGTGTGGGAT CACGGACAGT
 CAGAGCTTAA GCCCCATTTA TTGATGAGAA AACCACAAAG GGGATTAAGG CATTTCACGA
 ATTTAGTGCC CAGTATCCCT ATCTATCCTC AGCGAATTTC CACAGTTAAT TTCATAAGAG
 GCAAAAAGAT ATTAACTGGA CATTAGGCAA ACGCTGTCCC CAAAGTAAGA ATTCCGTAAT

  Submitted Frequency for ss48428317 back to top
There is no frequency submission for ss48428317.


  dbSNP summary of Genotypes for ss48428317 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
AGI_ASP population
- NORTH AMERICA 		7474C=0.75675678
T=0.24324325C/C=0.62162161
C/T=0.27027026
T/T=0.10810811
Pr(chiSq=2.615,df=1)
=0.150		Genotype
Freq.

  Submitted individual genotype for ss48428317 back to top
There is no individual genotype data for ss48428317.

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