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Submitted SNP(ss) Details: ss342437132           
Submitter
HandleNHLBI-ESP
Submitter SNP IDESP2500-chr16-88907407
RefSNP(rs#)rs146093755
Submitted Batch IDESP2500
Submitted DateMar 25, 2011
Publication CitedN.D.
First entry to dbSNPMar 25 2011 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		genomic
MethodEXOME CAPTURE AND SEQUENCING
Ascertainment Samplesize4550
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss342437132|allelePos=251|len=501|taxid=9606|alleles='C/T'|mol=Genomic
 GCGGAGTCTG ATGCCGCAGG ATACTCGCGG CCGTGGGACC AGCCTGGTGA CCTGAGATCC
 TGCTGGCAAG GTCACGCTGG CCTGCACAGG GACGCTGGAG ACACCTGAAC ACACCCAGAA
 TCAGCTGCCG TTTCCCACCC AAGACACCCT CCTCATTTGG AAACTTGTGG CCATGTCCCT
 TGGAACCAAG GCCAGGAAGT GGATGGAGCA GGACGCCTGG GCAGGCGTGG CCAGGAGACT
 TACCACTTGC
 Y
 GACAATCTTG CTGACGTAGC CGGCCTTCTT CAGAAGCTCC GGCAGGAGCT GCTCCGAGTC
 TGGGATGCCG CCCACAATCT CCTGCGGTGT GTAGGCTGGA AGAGCAGCGC TGGGTGAGCC
 CCGAGGAGAC CCCGAGAAGC TGCCACCAAC CCCATCCTAA CAGGACACTG GGGGCTGCGT
 CCACACATCC TAACAGGACA CTGGCCCCTC GGGGTCAAAG GCTGTGCCTG GGGGCTGCGC
 GTCCACAGGG

  Submitted Frequency for ss342437132 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
ESP_Cohort_Populations
- NORTH AMERICA 		12996C/C=0.99984598
C/T=0.00015400
T/T=0.00000000
ESP6500SINHLBI-ESP


  dbSNP summary of Genotypes for ss342437132 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
ESP_Cohort_Populations
- NORTH AMERICA 		45504550C=0.99978024
T=0.00021978C/C=0.99956042
C/T=0.00043956
T/T=0.00000000
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss342437132 back to top
There is no individual genotype data for ss342437132.

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