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Submitted SNP(ss) Details: ss24554293           
Submitter
HandlePERLEGEN
Submitter SNP IDafd2290089
RefSNP(rs#)rs12248560
Submitted Batch IDAFD_EUR_18-MAY-2004
Submitted DateAug 21, 2004
Publication CitedN.D.
First entry to dbSNPAug 10 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodAFD_CHIP_HYB
Ascertainment Samplesize48
PopulationAFD_EUR_PANEL
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginT:Germline A:Germline C:Germline
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 3
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss24554293|allelePos=101|len=201|taxid=9606|alleles='C/T'|mol=Genomic
 ATATTCAGAA TAACTAATGT TTGGAAGTTG TTTTGTTTTG CTAAAACAAA GTTTTAGCAA
 ACGATTTTTT TTTTCAAATT TGTGTCTT
 CTGTTCTCAA AG
 Y
 ATCTCTGATG TA
 AGAGATAATG CGCCACGATG GGCATCAGAA GACCTCAGCT CAAATCCCAG TTCTGCCAGC
 TATGAGCTGT GTGGCACCAA CAGGTGTC

  Submitted Frequency for ss24554293 back to top
There is no frequency submission for ss24554293.


  dbSNP summary of Genotypes for ss24554293 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
AFD_EUR_PANEL
NORTH AMERICA
4848C=0.75000000
T=0.25000000C/C=0.54166669
C/T=0.41666666
T/T=0.04166667
Pr(chiSq=0.296,df=1)
=0.655
Genotype
Freq.
AFD_AFR_PANEL
NORTH AMERICA
4646C=0.84782606
T=0.15217391C/C=0.69565219
C/T=0.30434781
Pr(chiSq=0.208,df=1)
=0.655
Genotype
Freq.

  Submitted individual genotype for ss24554293 back to top
There is no individual genotype data for ss24554293.

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