Submitted SNP(ss) Details: ss23203315

Submitted SNP(ss) Details: ss23203315

Submitter
Handle	PERLEGEN
Submitter SNP ID	afd1298281
RefSNP(rs#)	rs1800587
Submitted Batch ID	AFD_AFR_18-MAY-2004
Submitted Date	Aug 20, 2004
Publication Cited	N.D.
First entry to dbSNP	Aug 10 2004 12:00:00:000AM

Resource Links
GenBank Accession	NC_000002.6
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	AFD_CHIP_HYB
Ascertainment Samplesize	46
Population	AFD_AFR_PANEL

Allele
Observed Allele	G/A
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	Unknown

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	population count: 3
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 GGAGGTATGC GTAAGGCCTC AGCCAGAAGC CAGTGGCTAA GTTTGGGAAT GGAGATTGGG
 AGAAAGGAAG GCATGGATTT TTACATAT
 GAGCCTTCAA TG
 R
 TGTTGCCTGG TT
 ACTATTATTA AAGAATTTCT CAGCTTTTAT AATTCCTGTG GCCAGCCTAG TTCAGGTGGT
 AGAACACCAG ACTCTTAGCA AATGAATG

Submitted Frequency for ss23203315

There is no frequency submission for ss23203315.

dbSNP summary of Genotypes for ss23203315

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
AFD_EUR_PANEL - NORTH AMERICA	48	48	G=0.66666669	A=0.33333334	A/G=0.50000000 G/G=0.41666666 A/A=0.08333334	Pr(chiSq=0.375,df=1) =0.584	Genotype Freq.
AFD_AFR_PANEL - NORTH AMERICA	46	46	G=0.60869563	A=0.39130434	A/G=0.43478259 G/G=0.39130434 A/A=0.17391305	Pr(chiSq=0.175,df=1) =0.752	Genotype Freq.
AFD_CHN_PANEL - NORTH AMERICA	48	48	G=0.87500000	A=0.12500000	G/G=0.75000000 A/G=0.25000000	Pr(chiSq=0.115,df=1) =0.752	Genotype Freq.

Submitted individual genotype for ss23203315

There is no individual genotype data for ss23203315.

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