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Submitted SNP(ss) Details: ss170776165           
Submitter
HandleCOMPLETE_GENOMICS
Submitter SNP IDNA19240_36_chr10_96511647
RefSNP(rs#)rs12248560
Submitted Batch IDNA19240_snpassay_chr10
Submitted DateOct 01, 2009
Publication Cited[1] Human Genome Sequencing Using Unchained Base Reads on Self-assembling DNA Nanoarrays
First entry to dbSNPOct 1 2009 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCOMPLETE GENOMICS SEQUENCING
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginT:Germline A:Germline C:Germline
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 1
Genotype Submissionindividual count: 1
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss170776165|allelePos=251|len=501|taxid=9606|alleles='C/T'|mol=Genomic
 TCAGTTACAC TGAGCATTTC CCCTCTGCAG TGATGGAGAA GGGAGAACTC TTATTTTTTC
 TCATGAGCAT CTCTGGGGCT GTTTTCCTTA GATAAATAAG TGGTTCTATT TAATGTGAAG
 CCTGTTTTAT GAACAGGATG AATGTGGTAT ATATTCAGAA TAACTAATGT TTGGAAGTTG
 TTTTGTTTTG CTAAAACAAA GTTTTAGCAA ACGATTTTTT TTTTCAAATT TGTGTCTTCT
 GTTCTCAAAG
 Y
 ATCTCTGATG TAAGAGATAA TGCGCCACGA TGGGCATCAG AAGACCTCAG CTCAAATCCC
 AGTTCTGCCA GCTATGAGCT GTGTGGCACC AACAGGTGTC CTGTTCTCCC AGGGTCTCCC
 TTTTCCCATT TGAAATATAA AAAATAACAA TTCCTGCCTT CACGTGTTTT TTTAGGGGGT
 TAAATGGTAA AGGTGTTTAT ATCTGCTAAG GTAATTTACT TGATATATGT TTGGTTATTG
 AAGATATATG

  Submitted Frequency for ss170776165 back to top
There is no frequency submission for ss170776165.


  dbSNP summary of Genotypes for ss170776165 back to top
No sufficient data to compute Hardy-weinberg probability for ss170776165.


  Submitted individual genotype for ss170776165 back to top

Submitter:COMPLETE_GENOMICSBatch:NA19240_snpinduse_chr10
  
Population ID
-Class
Individual By Genotype
C/T
YRI
WEST AFRICA
NA19240
Sample(N): 11

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