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Submitted SNP(ss) Details: ss1289986           
Submitter
HandleTSC-CSHL
Submitter SNP IDTSC0122605
RefSNP(rs#)rs868014
Submitted Batch IDTSC-SANGER-19-25-000905-RESUBMISSION
Submitted DateSep 06, 2000
Publication CitedN.D.
First entry to dbSNPSep 6 2000 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodTSC-SANGER-19-25
Ascertainment Samplesize10
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 5
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss1289986|allelePos=41|len=712|taxid=9606|alleles='C/T'|mol=Genomic
 TGGGCCCCAG CTCTGCCCCA GCCCCCACCC CGCGGTGCTC
 Y
 GGCGGCTTCC TGTCCACTCT CGGGGCCCTT GGGGCCTGGC TTGCTCCAGG GTCTTGGGCT
 ACTGGCAGCT CCTCTCCTTG GGCTCCTGGC TGCCAGGCGT TGGTGCCACT TCTTAAAGGC
 CTGGAACCAG GGAGGAGAGG AAATGCTATT GTTGTGGGCT TTCTCCGGGG TCTGTGCTGT
 GCCTGCTAGA GCAACCCCTG TACCCAGCTC CTTTTGTCCC CAGGGCCCCT CCCTCTGCCC
 CAAGCAGCCA GCCAGTCTTG CCTAGGCCAA ATGCACAAGC TCAGAATAGA TCTGATGGTG
 AGCTGGGAAG CTGTACTCAG AGCAGAGCAA ATGAGGGAGG GGGCGCTCAG GACCCAGGCC
 CTCCATGGGC TAGTGTGAGT GGCAGCCATG CCTCATGCCA CACCTTCTTC GCAAACTGAT
 GGACCGGGTG GGCCTGGCCT GAGCTGGGGC CACAAATCAA AGCAAGGGCT CCAGCATCCA
 GCCTGTGTGT TCTGTAATGG AACTGACCCC CTCCCCTGAA AACGAAGGGG CCCCGGGGCT
 GGCAAGCAGG GAAAGCTCCC GGTGCGCGGC TGTGGCACAG ACTTCTGGAA GGCTGCTGAG
 TGAATGCAGG AAGAGGGCAG TACCTGGGAA AGAACCACCC ATTTCTGCTG CTGAACTGCT
 GAGCCCTCGC A

  Submitted Frequency for ss1289986 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
WICGR1_caucasian
- NORTH AMERICA 		174C=1.00000000
TSC-WICGR-WICGR1_caucasian-Sep-21-2003-ALLELE_FREQUENCYTSC-CSHL


  dbSNP summary of Genotypes for ss1289986 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-YRI118118C=0.77966100
T=0.22033899C/C=0.61016947
C/T=0.33898306
T/T=0.05084746
Pr(chiSq=0.011,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss1289986 back to top
There is no individual genotype data for ss1289986.

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