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Submitted SNP(ss) Details: ss6310590           
Submitter
HandleEGP_SNPS
Submitter SNP IDTNF-002228
RefSNP(rs#)rs1800610
Submitted Batch IDTNF-PDR90-011303
Submitted DateJan 15, 2003
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPJan 15 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize162
PopulationPDR90
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec_g/a
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss6310590|allelePos=256|len=511|taxid=9606|alleles='A/G'|mol=Genomic
 CAAGAAGACA GGGGGGCCCC AGGGCTCCAG GCGGTGCTTG TTCCTCAGCC TCTTCTCCTT
 CCTGATCGTG GCAGGCGCCA CCACGCTCTT CTGCCTGCTG CACTTTGGAG TGATCGGCCC
 CCAGAGGGAA GAGGTGAGTG CCTGGCCAGC CTTCATCCAC TCTCCCACCC AAGGGGAAAT
 GGAGACGCAa gagagggaga gagatgggat gggtgaaaga tgtgcgctga tagggaggga
 tggagagaaa aaaac
 R
 tggagaaaga cggggatgca gaaagagatg tggcaagaga tggggaagag agagagagaa
 agatggagag acagGATGTC TGGCACATGG AAGGTGCTCA CTAAGTGTGT ATGgagtgaa
 tgaatgaatg aatgaatgaa tgaaCAAGCA GATATATAAA TAAGATATGG AGACAGATGT
 GGGGTGTGAG AAGAGAGATG GGGGAAGAAA CAAGTGATAT GAATAAAGAT GGTGAGACAG
 AAAGAGAGCG GGAAA

  Submitted Frequency for ss6310590 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90162G=0.88271600
A=0.11728400
0.207 +/-0.055TNF-PDR90-011303EGP_SNPS


  dbSNP summary of Genotypes for ss6310590 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PDR90162162G=0.88271606
A=0.11728395G/G=0.77777779
A/G=0.20987654
A/A=0.01234568
Pr(chiSq=0.015,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss6310590 back to top
There is no individual genotype data for ss6310590.

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