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Submitted SNP(ss) Details: ss4917034           
Submitter
HandleEGP_SNPS
Submitter SNP IDXPC-000441
RefSNP(rs#)rs3731053
Submitted Batch IDXPC-PDR90-071602
Submitted DateJul 19, 2002
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPJul 19 2002 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize180
PopulationPDR90
Allele
Observed Allele-/A
Ancestral Allele
Allele OriginN/A
SNP ClassDIV
CpG CodenonCpG
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss4917034|allelePos=256|len=511|taxid=9606|alleles='-/A'|mol=Genomic
 TTACTtttat ctgttctcct cgcaaatata agctccaagt aatggcaagg atctcttata
 tgtcgatgtc agtgtccctg gcccttagaa cagtgcctaa ccatacaaag ctgatgttca
 ctctatctgc tgaatgaata aatAATTGTT GCGCTCACTA ATGATAACAA CTCCTAACTT
 TATTACCTGG CTTTCTATTG GAATCCTGAC AGCTCCATGA GGTAGCTAAG GATAATAATC
 TACAGATTTA AAAAA
 N
 TGAAGCGAAG AGTGTGAGAA TAGTCATCAG GTGGGCTTCT AACAGGAAAA GGTCTCAGGG
 CCTACGGCAA AATTCGGAGG GGGGGTTACG GAAAGGACAG GGTGGATTAG GCCATGGTGA
 CTTGGAGAGA GGAGGCACGA CTGGCCATTT TTCCTGAGTC TGGAAAAAGC AGCCTAGTAC
 AAGAAGCTCC TTCGAGCGAC CTCCTTAAAA TACACTTACC TGGTCTACGT CGTCCGCCAT
 GTTTCAAACC CTGCG

  Submitted Frequency for ss4917034 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90180A=0.99444401
-=0.00555600
0.011 +/-0.015XPC-PDR90-071602EGP_SNPS


  dbSNP summary of Genotypes for ss4917034 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PDR90180180A=0.99444443
-=0.00555556A/A=0.98888886
-/A=0.01111111
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss4917034 back to top
There is no individual genotype data for ss4917034.

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