NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss35035670           
Submitter
HandleEGP_SNPS
Submitter SNP IDCDKN1B-001603
RefSNP(rs#)rs3093731
Submitted Batch IDCDKN1B-PDR90-020805
Submitted DateFeb 09, 2005
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPFeb 9 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize152
PopulationPDR90
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss35035670|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 AGAAACTGGA GATGGTAAGA TCCGATAATT TCCCTAACTT AATACATCGC GGTCCCTCTC
 ACTAGCAACT CCTAGGTATG TGACAAAGTT GGGATGTTTA TCAACGGTCC GCCTCCTGGC
 TAGGGAAAGA GCTCTGGGGC GGAGAATGCA CTTTCTGTTT TTTGAAAACA ACCTCATTTT
 GTGCCCTTAA AAGCCACTGG GGATGACGGA TCCAGGATTG TGGGTGGAGG TAGTGGGTTT
 TTCATCCCCT GACTA
 Y
 GGGGCCAACT TCTGCCAGCC ATTGTTTTTT CTAATAAAGA TTGTGTGTTC TTTTTAAAAA
 TTTCCCCTGC GCTTAGATTC TTCTACTCAA AACAAAAGAG CCAACAGAAC AGAAGAAAAT
 GTTTCAGACG GTTCCCCAAA TGCCGGTTCT GTGGAGCAGA CGCCCAAGAA GCCTGGCCTC
 AGAAGACGTC AAACGTAAAC AGCTCGGTGG GTTGATCACT AAAGGAGCAC GCACTGGAAC
 CCGGGGCCTT CAGAC

  Submitted Frequency for ss35035670 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90152T=0.96052599
C=0.03947400
CDKN1B-PDR90-020805EGP_SNPS


  dbSNP summary of Genotypes for ss35035670 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PDR90152152T=0.96052629
C=0.03947368T/T=0.93421054
C/T=0.05263158
C/C=0.01315789
Pr(chiSq=7.113,df=1)
=0.010		Genotype
Freq.

  Submitted individual genotype for ss35035670 back to top
There is no individual genotype data for ss35035670.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement