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Reference SNP (refSNP) Cluster Report: rs936909                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:86/151
Map to Genome Build:108/Weight 1
Validation Status:byClusterbyFreqwith2hitwithHapMapFreqWith1000GenomeData
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:C/G/T (REV)
Allele Origin:
Ancestral Allele:C
Variation Viewer:link to VariationViewer
Clinical Significance:NA
MAF/MinorAlleleCount:A=0.1897/950 (1000 Genomes)
A=0.2048/25719 (TOPMED)
HGVS Names
  • CM000669.2:g.3135704A>C
  • CM000669.2:g.3135704A>G
  • NC_000007.13:g.3175338A>G
Links , Linkout
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss279152008 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs936909 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss1376702TSC-CSHL|TSC0354940fwd/BC/Tctctctttctcccccaattgctaagcaagactcccttgctgtgtaaatgctttcctaccc09/06/0010/25/0686Genomic95 %
ss10376747BCM_SSAHASNP|chr7.NT_007819.13_2471012rev/TA/Ggggtaggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaagagag06/29/0310/10/03116Genomicunknown
ss11867841WI_SSAHASNP|chr7.NT_007819.13_2471012rev/TA/Ggggtaggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaagagag07/04/0310/10/03116Genomicunknown
ss14591337WUGSC_SSAHASNP|chr7.NT_007819.14_2471012rev/TA/Ggggtaggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaagagag11/05/0311/22/03120Genomicunknown
ss17953860CSHL-HAPMAP|CSHL-HuCC-200402.chr7.NT_007819.14_2471012rev/TA/Ggggtaggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaagagag02/19/0403/04/04120Genomicunknown
ss19734140CSHL-HAPMAP|CSHL-HuDD-200402.chr7.NT_007819.14_2471012rev/TA/Ggggtaggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaagagag02/20/0403/04/04120Genomicunknown
ss22644435SSAHASNP|WGSA-200403-chr7.chr7.NT_007819.14_2471012rev/TA/Ggggtaggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaagagag03/21/0403/21/04121Genomicunknown
ss22960024SSAHASNP|AACC-200403.chr7.NT_007819.14_2471012rev/TA/Ggggtaggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaagagag03/22/0403/22/04121Genomicunknown
ss44805677ABI|hCV8303350byFreqrev/TA/Ggggtaggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaagagag07/19/0511/03/06126Genomicunknown
ss65774242ILLUMINA|Human1-rs936909fwd/BC/Tctctctttctcccccaattgctaagcaagactcccttgctgtgtaaatgctttcctaccc10/10/0610/10/06127Genomicunknown
ss66760047ILLUMINA|HumanHap300v1.1_rs936909fwd/TC/Tctctctttctcccccaattgctaagcaagactcccttgctgtgtaaatgctttcctaccc11/09/0611/09/06127Genomicunknown
ss67910635ILLUMINA|HumanHap550v1.1_rs936909fwd/BC/Tctctctttctcccccaattgctaagcaagactcccttgctgtgtaaatgctttcctaccc11/14/0611/14/06127Genomicunknown
ss68038719ILLUMINA|HumanHap650Yv1.0_rs936909fwd/BC/Tctctctttctcccccaattgctaagcaagactcccttgctgtgtaaatgctttcctaccc11/14/0611/15/06127Genomicunknown
ss71603382ILLUMINA|HumanHap650Yv3.0_rs936909fwd/BC/Tctctctttctcccccaattgctaagcaagactcccttgctgtgtaaatgctttcctaccc04/23/0704/23/07127Genomicunknown
ss75682609ILLUMINA|ILMN_Human_1M_rs936909fwd/BC/Tctctctttctcccccaattgctaagcaagactcccttgctgtgtaaatgctttcctaccc08/28/0708/29/07129Genomicunknown
ss78642640HGSV|Cor12878_SNV_20070510.chr7_2948579rev/TA/Ggggtaggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaagagag10/17/0710/20/07129Genomicunknown
ss79294477ILLUMINA|HumanHap300v2.0_rs936909fwd/BC/Tctctctttctcccccaattgctaagcaagactcccttgctgtgtaaatgctttcctaccc04/18/0711/18/07130Genomicunknown
ss83620905KRIBB_YJKIM|KHS503536fwd/BC/Tctctctttctcccccaattgctaagcaagactcccttgctgtgtaaatgctttcctaccc12/04/0712/05/07130Genomicunknown
ss84823377HGSV|Cor19240_SNV_20070510.chr7_2948579rev/TA/Ggggtaggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaagagag11/30/0712/08/07130Genomicunknown
ss93614661BCMHGSC_JDW|JWB-2260971rev/TA/Ggggtaggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaagagag02/26/0803/04/08129Genomicunknown
ss98127547HUMANGENOME_JCVI|1103652480648rev/TA/Ggggtaggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaagagag03/31/0803/31/08130Genomicunknown
ss98252150ILLUMINA|HumanHap550v3.0__rs936909rev/TA/Ggggtaggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaagagag04/20/0703/31/08130Genomicunknown
ss104391348BGI|BGI_rs936909rev/TA/Ggggtaggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaagagag06/08/0806/17/09131Genomicunknown
ss1114017171000GENOMES|CEU.trio.12.15.2008_1686157_chr7_3141864rev/TA/Ggggtaggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaagagag12/17/0812/17/08130Genomicunknown
ss1131921131000GENOMES|NA19240_2008_12_16_1515460_chr7_3141864rev/TA/Ggggtaggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaagagag12/18/0812/18/08130Genomicunknown
ss115889638ILLUMINA-UK|NA18507_000004152_NCBI36.1_chr7_3141864rev/TA/Ggggtaggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaagagag01/16/0901/16/09130Genomic99 %
ss122980536ILLUMINA|HumanCNV370v1_C_rs936909fwd/BC/Tctctctttctcccccaattgctaagcaagactcccttgctgtgtaaatgctttcctaccc04/14/0904/15/09131Genomicunknown
ss139430154ENSEMBL|ENSSNP7606251rev/TA/Ggggtaggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaagagag12/08/0810/19/09131Genomicunknown
ss142577838ENSEMBL|ENSSNP5884266rev/TA/Ggggtaggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaagagag06/05/0906/05/09131Genomicunknown
ss154490151ILLUMINA|Human610_Quadv1_B_rs936909-128_T_R_1501887192rev/TA/Ggggtaggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaagagag06/18/0906/20/09131Genomicunknown
ss157962037GMI|GMI_SNP_48113884rev/TA/Ggggtaggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaagagag06/24/0906/25/09131Genomicunknown
ss159664197ILLUMINA|Human660W-Quad_v1_A_rs936909-128_T_R_1501887192rev/TA/Ggggtaggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaagagag07/06/0907/07/09131Genomicunknown
ss160981375ILLUMINA|HumanOmni1-Quad_v1-0_B_rs936909-128_T_R_1501887192rev/TA/Ggggtaggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaagagag08/04/0910/05/09131Genomicunknown
ss161985907COMPLETE_GENOMICS|NA07022_36_chr7_3141864rev/TA/Ggggtaggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaagagag09/28/0909/28/09132Genomicunknown
ss163543818COMPLETE_GENOMICS|NA19240_36_chr7_3141864rev/TA/Ggggtaggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaagagag09/29/0909/29/09132Genomicunknown
ss166031355COMPLETE_GENOMICS|NA20431_36_chr7_3141864rev/TA/Ggggtaggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaagagag09/30/0909/30/09132Genomicunknown
ss172455542ILLUMINA|HumanCNV370-Quadv3_C_rs936909-128_T_R_1501887192rev/TA/Ggggtaggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaagagag10/01/0910/04/09132Genomicunknown
ss174825820ILLUMINA|Human1M-Duov3_B_rs936909-128_T_R_1501887192rev/TA/Ggggtaggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaagagag10/01/0910/05/09132Genomicunknown
ss202837792BUSHMAN|BUSHMAN-chr7-3141863rev/TA/Ggggtaggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaagagag02/16/1003/08/10132Genomicunknown
ss208092212BCM-HGSC-SUB|BCM_CMT_1011-1496408rev/TA/Ggggtaggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaagagag03/15/1003/19/10132Genomicunknown
ss2228595561000GENOMES|pilot_1_YRI_4669239_chr7_3141864rev/A/Ggggtaggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaagagag04/22/1004/22/10132Genomicunknown
ss2338154841000GENOMES|pilot_1_CEU_3420113_chr7_3141864rev/A/Ggggtaggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaagagag05/01/1005/01/10132Genomicunknown
ss2408040581000GENOMES|pilot_1_CHB+JPT_2689135_chr7_3141864rev/A/Ggggtaggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaagagag05/01/1005/01/10132Genomicunknown
ss253993584BL|SNP4658_7_3141864rev/TA/Ggggtaggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaagagag08/19/1008/19/10134Genomicunknown
ss279152008GMI|GMI_AK_SNP_3472253rev/A/Ggggtaggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaagagag12/16/1012/16/10137Genomicunknown
ss285561139GMI|GMI_NA10851_SNP_1573912rev/A/Ggggtaggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaagagag12/17/1012/17/10138Genomicunknown
ss293854305PJP|SNP_3360663_chr7_3141864rev/A/Ggggtaggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaagagag01/21/1101/21/11134Genomicunknown
ss481881211ILLUMINA|HumanOmni2.5-4v1_B_rs936909-128_T_R_1772355681rev/TA/Gggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaa01/30/1210/28/16137Genomicunknown
ss481914196ILLUMINA|HumanOmniExpress-12v1_C_rs936909-131_T_R_1857602156rev/TA/Gggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaa01/30/1210/27/16137Genomicunknown
ss482872690ILLUMINA|HumanOmni1-Quad_v1-0_C_rs936909-131_T_R_1865585672rev/TA/Gggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaa01/30/1208/28/15146Genomicunknown
ss485734845ILLUMINA|HumanOmni2.5-4v1_D_rs936909-131_T_R_1857602156rev/TA/Gggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaa01/30/1210/28/16137Genomicunknown
ss537591775ILLUMINA|HumanOmni5-4v1_B_rs936909-131_T_R_1891317320rev/TA/Gggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaa06/22/1208/29/15146Genomicunknown
ss559749538TISHKOFF|snp_chr7_3175338rev/TA/Gggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaa11/22/1211/23/12138Genomicunknown
ss654098647SSMP|7_3175338rev/TA/Gggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaa12/14/1202/11/15138Genomicunknown
ss778637077ILLUMINA|HumanOmni25Exome-8v1_A_rs936909-131_T_R_1865585672rev/TA/Gggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaa05/30/1307/09/15142Genomicunknown
ss783313123ILLUMINA|HumanOmni2.5-4v1_H_rs936909-131_T_R_1857602156rev/TA/Gggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaa05/30/1307/29/15146Genomicunknown
ss784265199ILLUMINA|HumanOmniExpressExome-8v1_A_rs936909-131_T_R_1891317320rev/TA/Gggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaa05/31/1306/19/15142Genomicunknown
ss825624995ILLUMINA|HumanCNV370v1_C_rs936909-126_T_R_IFB1153890614:0rev/TA/Gggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaa06/24/1311/21/14144Genomicunknown
ss832574606ILLUMINA|HumanOmniExpress-12v1_H_rs936909-131_T_R_1857602156rev/TA/Gggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaa09/17/1306/19/15146Genomicunknown
ss834094749ILLUMINA|HumanOmni2.5-8v1_A_rs936909-131_T_R_1865585672rev/TA/Gggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaa09/18/1307/28/15142Genomicunknown
ss983854516EVA-GONL|EVA-GONL_rs936909rev/TA/Gggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaa04/23/1404/24/14142Genomicunknown
ss1074293190JMKIDD_LAB|HGDP_WGS_chr7_3175338rev/TA/Gggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaa07/10/1407/11/14142Genomicunknown
ss13235934701000GENOMES|PHASE3_V1_35698306rev/A/Gggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaa08/16/1408/16/14142Genomicunknown
ss1397481199HAMMER_LAB|HAMMER_LAB_rs936909rev/TA/Gggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaa09/30/1407/15/15146Genomicunknown
ss1431000013DDI|DDI_rs936909rev/TA/Gggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaa11/04/1411/05/14144Genomicunknown
ss1582033441EVA_GENOME_DK|EVA_GENOME_DK_snv_rs936909rev/TA/Gggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaa02/19/1502/20/15144Genomicunknown
ss1593421219EVA_DECODE|EVA_DECODE_7_3141864_29397_rs936909rev/TA/Gggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaa03/02/1503/03/15144Genomicunknown
ss1712925306EVA_SVP|EVA_SVP_619673rev/TA/Gggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaa03/12/1503/12/15144Genomicunknown
ss1752682452ILLUMINA|OmniExpressExome-8v1-1_B_rs936909-131_T_R_1891317320rev/TA/Gggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaa05/27/1506/09/15146Genomicunknown
ss1804826924HAMMER_LAB|Hsieh_3838701rev/TA/Gggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaa07/15/1507/16/15146Genomicunknown
ss1927100380WEILL_CORNELL_DGM|SNV:chr7:3175338rev/TA/Gggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaa10/16/1510/17/15147Genomicunknown
ss1970603749GENOMED|rs936909rev/TA/Gggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaa02/16/1602/16/16147Genomicunknown
ss2024218580JJLAB|SNP4721135rev/TA/Gggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaa08/29/1608/30/16149Genomicunknown
ss2152418751USC_VALOUEV|NC_000007.13:g.3175338A>Grev/A/Gggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaa11/17/1611/17/16150Genomicunknown
ss2291103831HUMAN_LONGEVITY|HLI-7-3135704-A-Grev/A/Gggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaa11/18/1611/18/16150Genomicunknown
ss2459785470TOPMED|7_3175338_A/Grev/A/Gggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaa11/20/1611/20/16150Genomicunknown
ss2626601042SYSTEMSBIOZJU|SYSTEMSBIOZJU_SNV3018031rev/A/Gggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaa01/06/1701/06/17151Genomicunknown
ss2634555053ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_rs936909-131_T_R_189131732rev/A/Gggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaa02/02/1702/02/17151Genomicunknown
ss2708067176GRF|rs936909rev/A/Gggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaa02/13/1702/13/17151Genomicunknown
ss2848827895GNOMAD|rs936909rev/A/Gggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaa05/19/1705/19/17151Genomicunknown
ss3000488876SWEGEN|NC_000007.13:g.3175338A>Grev/A/Gggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaa05/30/1705/30/17151Genomicunknown
ss3025904035BIOINF_KMB_FNS_UNIBA|7.3135704A>Grev/A/Gggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaa07/05/1707/05/17151Genomicunknown
ss3347394184CSHL|rs936909rev/A/Gggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaa10/02/1710/02/17151Genomicunknown
ss3520356124TOPMED|TOPMed_freeze_5?chr7:3,135,704-01rev/A/Cggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaa10/06/1710/06/17151Genomicunknown
ss3520356125TOPMED|TOPMed_freeze_5?chr7:3,135,704-02rev/A/Gggaaagcatttacacagcaagggagtcttgcttagcaattgggggagaaa10/06/1710/06/17151Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs936909|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='C/G/T'|mol=Genomic|build=151
 AAAATTAGCT GGGCATGGTG GTACACGCCT GTAGTACCAG CTACTCTGGA AACTGAGACA
 GGAGAATCGC TTGAACCCAG GAGGCGGAGG TTGCAGTGAA TTGAGATGGC TCCACTGCAC
 TCCAGCCTGG GCAACAAGAG CGAAACTCTC AAAAAAAAAA AAAAAAAAAA AAAAGTTACC
 AGTTTTGCAT AAGCTACTCA GGGTTGGGTT GAGTGTCTGT CACTTGCATC CAAAAAGTTC
 TGACAAATAT ACAAGGCAAC CCGTGGAGAG TTTGCTCCCT CTGAGAACGA TAAAGCAGCT
 CTTTCTCCCC CTTGGAAAGT AGATGAGAAA GTAATTTGTA TGCAAATGGA GATGGATGTG
 ACCTCCTGCT TTATCAATAG CAACTTGTCC CCTTTTCAGA AAACAGAAAC TTACGTTCCA
 CTTTGTACAA ACGGTACAGT TCAGAATGGC AGCTGGAGGC AAATCTTTCT CTCTCTTTCT
 CCCCCAATTG CTAAGCAAGA
 B
 CTCCCTTGCT GTGTAAATGC TTTCCTACCC TTTGACACAA TTGCTTCAGG TCTTTTCTCC
 TGGGTGAAAC GTTCCGCAGA AGGGGCCGGG CAGGGAACTT TAATTAGAAA GCAGATCACC
 CACCCACATG AGATCAAAAT TCAGAGTGTA CCCGTCCCTC CTGGCTGGCA TTCTAGAAAA
 AGCAACTGAA GGAAGTAGAA TGTGGGTGGT CTGACATGTC CACATCAAGT GCCTGGTCAG
 CATGTCGGTC CTGGGAGGGC AGGACCCTGG GGGTCCTTTC TTAGAAGAAC ACAAATTATC
 AAAGACCTGA TGTGTTGGGA TAGAAAGAAG GATGCCGGCT AAGATGACAT CGAGTGTAAG
 CTTGAAGGCT ATAACAAACC TTCCAGTAAC AATAATGTGT TTATGCCGTA TTTATCACCT
 ACGAAGTGTT TTCACATACA ATGCTCACCA ACCTCTTCTT AGAGCAATGC CCCATCCTCA
 TGGGATCTAA CTTCTGAAAG

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_007819 ABBA01039397
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) . See additional population frequency from 1000Genome [here] Note: rs936909 allele is reverse to the genome back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceC/C
C/T
T/T
HWPC
T
ss115889638YRI 2IG1.00000000 1.00000000
ss1323593470EAS 1008AF 0.954400000.04560000
EUR 1006AF 0.831000030.16900001
AFR 1322AF 0.672500010.32749999
AMR 694AF 0.848699990.15130000
SAS 978AF 0.799600010.20039999
ss139430154ENSEMBL_Venter 2IG1.00000000 1.00000000
ss142577838ENSEMBL_Watson 2IG1.00000000 1.00000000
ss161985907CEUEuropean 2IG1.00000000 1.00000000
ss163543818YRISub-Saharan African 2IG 1.00000000 0.500000000.50000000
ss166031355PGP 2IG 1.00000000 0.500000000.50000000
ss202837792BANTU 2IG 1.00000000 0.500000000.50000000
ss222859556pilot_1_YRI_low_coverage_panel 118AF 0.593220350.40677965
ss233815484pilot_1_CEU_low_coverage_panel 120AF 0.899999980.10000000
ss240804058pilot_1_CHB+JPT_low_coverage_panel 120AF 0.933333340.06666667
ss44805677HapMap-CEUEuropean 226IG0.743362840.247787610.008849560.438578000.867256640.13274336
HapMap-HCBAsian 86IG0.883720930.11627907 1.000000000.941860440.05813954
HapMap-JPTAsian 172IG0.918604670.08139535 1.000000000.959302310.04069768
HapMap-YRISub-Saharan African 226IG0.513274310.398230080.088495571.000000000.712389410.28761062
HAPMAP-ASW 98IG0.326530610.632653060.040816330.010028000.642857130.35714287
HAPMAP-CHBAsian 82IG0.926829280.07317073 1.000000000.963414610.03658536
HAPMAP-CHD 168IG0.904761910.09523810 1.000000000.952380960.04761905
HAPMAP-GIH 176IG0.534090940.409090910.056818180.583882000.738636370.26136363
HAPMAP-LWK 180IG0.477777780.400000010.122222220.438578000.677777770.32222223
HAPMAP-MEX 100IG0.699999990.30000001 0.527089000.850000020.15000001
HAPMAP-MKK 286IG0.307692320.475524490.216783210.654721000.545454560.45454547
HAPMAP-TSI 176IG0.636363630.340909090.022727270.402784000.806818190.19318181
ss98127547J. Craig Venter 2IG1.00000000 1.00000000

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
Additional Freq. Data
0.307+/-0.2430000ALFRED: The Allele Frequency Database

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqwith2hitwithHapMapFreqWith1000GenomeData
DoubleHit found by:  BCM_SSAHASNP
UNKNOWNUNKNOWNUNKNOWN

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