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Reference SNP (refSNP) Cluster Report: rs855913                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:86/151
Map to Genome Build:108/Weight 1
Validation Status:byClusterbyFreqwith2hitWith1000GenomeData
Citation:PubMedLitVarNEW
Association:NHGRI GWAS
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:G/T (REV)
Allele Origin:
Ancestral Allele:G
Variation Viewer:link to VariationViewer
Clinical Significance:NA
MAF/MinorAlleleCount:A=0.0184/92 (1000 Genomes)
A=0.0381/4779 (TOPMED)
HGVS Names
  • CM000669.2:g.149506571A>C
  • NC_000007.13:g.149203662A>C
Links , Linkout
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss1718553 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs855913 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss1244554KWOK|OVLP-000804-467140fwd/BG/Tggaaatacagtttttatagatgcaattaaatagagcttagagtgggctataagtcaaatg09/02/0010/10/0386Genomic97 %
ss1718553KWOK|OVLP-000925-24237byFreqfwd/BG/Tggaaatacagtttttatagatgcaattaaatagagcttagagtgggctataagtcaaatg10/05/0010/25/0687Genomic97 %
ss2455105SC_JCM|AC004932.3_139254fwd/BG/Tggaaatacagtttttatagatgcaattaaatagagcttagagtgggctataagtcaaatg11/03/0010/10/0392Genomicunknown
ss3403456SC_JCM|AC004932.4_11930rev/TA/Ccatttgacttatagcccactctaagctctatttaattgcatctataaaaactgtatttcc09/24/0110/10/03100Genomicunknown
ss6515051WI_SSAHASNP|NT_007914.10_9737871rev/TA/Ccatttgacttatagcccactctaagctctatttaattgcatctataaaaactgtatttcc02/12/0310/10/03111Genomicunknown
ss10382044BCM_SSAHASNP|chr7.NT_007914.12_9746433rev/TA/Ccatttgacttatagcccactctaagctctatttaattgcatctataaaaactgtatttcc06/29/0310/10/03116Genomicunknown
ss22577648SSAHASNP|WGSA-200403-chr7.chr7.NT_007914.13_9779678rev/TA/Ccatttgacttatagcccactctaagctctatttaattgcatctataaaaactgtatttcc03/21/0403/21/04121Genomicunknown
ss22960992SSAHASNP|AACC-200403.chr7.NT_007914.13_9779678rev/TA/Ccatttgacttatagcccactctaagctctatttaattgcatctataaaaactgtatttcc03/22/0403/22/04121Genomicunknown
ss44814879ABI|hCV3198062rev/TA/Ccatttgacttatagcccactctaagctctatttaattgcatctataaaaactgtatttcc07/19/0507/19/05126Genomicunknown
ss66726473ILLUMINA|HumanHap300v1.1_rs855913fwd/TG/Tggaaatacagtttttatagatgcaattaaatagagcttagagtgggctataagtcaaatg11/09/0611/09/06127Genomicunknown
ss67881384ILLUMINA|HumanHap550v1.1_rs855913fwd/BG/Tggaaatacagtttttatagatgcaattaaatagagcttagagtgggctataagtcaaatg11/14/0611/14/06127Genomicunknown
ss68022241ILLUMINA|HumanHap650Yv1.0_rs855913fwd/BG/Tggaaatacagtttttatagatgcaattaaatagagcttagagtgggctataagtcaaatg11/14/0611/15/06127Genomicunknown
ss70975326ILLUMINA|HumanHap550v3.0__rs855913rev/TA/Ccatttgacttatagcccactctaagctctatttaattgcatctataaaaactgtatttcc04/20/0703/31/08130Genomicunknown
ss71586872ILLUMINA|HumanHap650Yv3.0_rs855913fwd/BG/Tggaaatacagtttttatagatgcaattaaatagagcttagagtgggctataagtcaaatg04/23/0704/23/07127Genomicunknown
ss75717744ILLUMINA|ILMN_Human_1M_rs855913fwd/BG/Tggaaatacagtttttatagatgcaattaaatagagcttagagtgggctataagtcaaatg08/28/0708/29/07129Genomicunknown
ss79284432ILLUMINA|HumanHap300v2.0_rs855913fwd/BG/Tggaaatacagtttttatagatgcaattaaatagagcttagagtgggctataagtcaaatg04/18/0711/18/07130Genomicunknown
ss83581180KRIBB_YJKIM|KHS494814fwd/BG/Tggaaatacagtttttatagatgcaattaaatagagcttagagtgggctataagtcaaatg12/04/0712/05/07130Genomicunknown
ss93788943BCMHGSC_JDW|JWB-2391486rev/TA/Ccatttgacttatagcccactctaagctctatttaattgcatctataaaaactgtatttcc02/26/0803/05/08129Genomicunknown
ss98350319HUMANGENOME_JCVI|1103652737146rev/TA/Ccatttgacttatagcccactctaagctctatttaattgcatctataaaaactgtatttcc03/31/0803/31/08130Genomicunknown
ss105581705BGI|BGI_rs855913rev/TA/Ccatttgacttatagcccactctaagctctatttaattgcatctataaaaactgtatttcc09/10/0806/18/09130Genomicunknown
ss1126331061000GENOMES|CEU.trio.12.15.2008_1880685_chr7_148834595rev/TA/Ccatttgacttatagcccactctaagctctatttaattgcatctataaaaactgtatttcc12/17/0812/17/08130Genomicunknown
ss116379655ILLUMINA-UK|NA18507_000185692_NCBI36.1_chr7_148834595rev/TA/Ccatttgacttatagcccactctaagctctatttaattgcatctataaaaactgtatttcc01/16/0901/17/09131Genomic99 %
ss122920481ILLUMINA|HumanCNV370v1_C_rs855913fwd/BG/Tggaaatacagtttttatagatgcaattaaatagagcttagagtgggctataagtcaaatg04/14/0904/15/09131Genomicunknown
ss139842100ENSEMBL|ENSSNP3647502rev/TA/Ccatttgacttatagcccactctaagctctatttaattgcatctataaaaactgtatttcc12/08/0810/16/09131Genomicunknown
ss143083367ENSEMBL|ENSSNP6281348rev/TA/Ccatttgacttatagcccactctaagctctatttaattgcatctataaaaactgtatttcc06/05/0906/05/09131Genomicunknown
ss154474418ILLUMINA|Human610_Quadv1_B_rs855913-128_T_R_1501878733rev/TA/Ccatttgacttatagcccactctaagctctatttaattgcatctataaaaactgtatttcc06/18/0906/20/09131Genomicunknown
ss155671883GMI|GMI_SNP_48273393rev/TA/Ccatttgacttatagcccactctaagctctatttaattgcatctataaaaactgtatttcc06/24/0906/24/09131Genomicunknown
ss159648902ILLUMINA|Human660W-Quad_v1_A_rs855913-128_T_R_1501878733rev/TA/Ccatttgacttatagcccactctaagctctatttaattgcatctataaaaactgtatttcc07/06/0907/07/09131Genomicunknown
ss162835028COMPLETE_GENOMICS|NA07022_36_chr7_148834595rev/TA/Ccatttgacttatagcccactctaagctctatttaattgcatctataaaaactgtatttcc09/28/0909/29/09132Genomicunknown
ss165666242COMPLETE_GENOMICS|NA19240_36_chr7_148834595rev/TA/Ccatttgacttatagcccactctaagctctatttaattgcatctataaaaactgtatttcc09/29/0909/30/09132Genomicunknown
ss167249563COMPLETE_GENOMICS|NA20431_36_chr7_148834595rev/TA/Ccatttgacttatagcccactctaagctctatttaattgcatctataaaaactgtatttcc09/30/0909/30/09132Genomicunknown
ss172411415ILLUMINA|HumanCNV370-Quadv3_C_rs855913-128_T_R_1501878733rev/TA/Ccatttgacttatagcccactctaagctctatttaattgcatctataaaaactgtatttcc10/01/0910/04/09132Genomicunknown
ss174751582ILLUMINA|Human1M-Duov3_B_rs855913-128_T_R_1501878733rev/TA/Ccatttgacttatagcccactctaagctctatttaattgcatctataaaaactgtatttcc10/01/0910/05/09132Genomicunknown
ss198474468BUSHMAN|BUSHMAN-chr7-148834594rev/TA/Ccatttgacttatagcccactctaagctctatttaattgcatctataaaaactgtatttcc02/16/1003/06/10132Genomicunknown
ss207931275BCM-HGSC-SUB|BCM_CMT_1011-1443187rev/TA/Ccatttgacttatagcccactctaagctctatttaattgcatctataaaaactgtatttcc03/15/1003/19/10132Genomicunknown
ss2121373921000GENOMES|YRI.trio.3.2010_759331_chr7_148834595rev/TA/Ccatttgacttatagcccactctaagctctatttaattgcatctataaaaactgtatttcc03/29/1003/31/10132Genomicunknown
ss2342212741000GENOMES|pilot_1_CEU_3825903_chr7_148834595rev/A/Ccatttgacttatagcccactctaagctctatttaattgcatctataaaaactgtatttcc05/01/1005/01/10132Genomicunknown
ss2411211421000GENOMES|pilot_1_CHB+JPT_3006219_chr7_148834595rev/A/Ccatttgacttatagcccactctaagctctatttaattgcatctataaaaactgtatttcc05/01/1005/01/10132Genomicunknown
ss254760778BL|SNP162337_7_148834595rev/TA/Ccatttgacttatagcccactctaagctctatttaattgcatctataaaaactgtatttcc08/19/1008/19/10134Genomicunknown
ss279583647GMI|GMI_AK_SNP_3903896rev/A/Ccatttgacttatagcccactctaagctctatttaattgcatctataaaaactgtatttcc12/16/1012/16/10137Genomicunknown
ss285743608GMI|GMI_NA10851_SNP_1756381rev/A/Ccatttgacttatagcccactctaagctctatttaattgcatctataaaaactgtatttcc12/17/1012/17/10138Genomicunknown
ss294000667PJP|SNP_3507025_chr7_148834595rev/A/Ccatttgacttatagcccactctaagctctatttaattgcatctataaaaactgtatttcc01/21/1101/21/11134Genomicunknown
ss410955400ILLUMINA|Cardio-Metabo_Chip_11395247_A_rs855913rev/TA/Ccatttgacttatagcccactctaagctctatttaattgcatctataaaaactgtatttcc06/07/1106/08/11135Genomicunknown
ss491407654EXOME_CHIP|.GWAS._123880_chr_7_149203662rev/TA/Ccatttgacttatagcccactctaagctctatttaattgcatctataaaaactgtatttcc03/05/1203/05/12137Genomicunknown
ss537565890ILLUMINA|HumanOmni5-4v1_B_rs855913-131_T_R_1866867522rev/TA/Cgacttatagcccactctaagctctatttaattgcatctataaaaactgta06/22/1208/29/15146Genomicunknown
ss560393004TISHKOFF|snp_chr7_149203662rev/TA/Cgacttatagcccactctaagctctatttaattgcatctataaaaactgta11/22/1211/23/12138Genomicunknown
ss654804271SSMP|7_149203662rev/TA/Cgacttatagcccactctaagctctatttaattgcatctataaaaactgta12/14/1202/11/15138Genomicunknown
ss780687099ILLUMINA|HumanOmni25Exome-8v1_A_exm-rs855913-131_T_R_1990494526rev/TA/Cgacttatagcccactctaagctctatttaattgcatctataaaaactgta05/30/1307/10/15146Genomicunknown
ss783360642ILLUMINA|HumanOmniExpressExome-8v1_A_exm-rs855913-131_T_R_1990494526rev/TA/Cgacttatagcccactctaagctctatttaattgcatctataaaaactgta05/31/1306/19/15146Genomicunknown
ss825614950ILLUMINA|HumanCNV370v1_C_rs855913-126_T_R_IFB1156571858:0rev/TA/Cgacttatagcccactctaagctctatttaattgcatctataaaaactgta06/24/1311/21/14144Genomicunknown
ss984946346EVA-GONL|EVA-GONL_rs855913rev/TA/Cgacttatagcccactctaagctctatttaattgcatctataaaaactgta04/23/1404/24/14142Genomicunknown
ss1075092720JMKIDD_LAB|HGDP_WGS_chr7_149203662rev/TA/Cgacttatagcccactctaagctctatttaattgcatctataaaaactgta07/10/1407/11/14142Genomicunknown
ss13276970741000GENOMES|PHASE3_V1_39971005rev/A/Cgacttatagcccactctaagctctatttaattgcatctataaaaactgta08/16/1408/16/14142Genomicunknown
ss1397509853HAMMER_LAB|HAMMER_LAB_rs855913rev/TA/Cgacttatagcccactctaagctctatttaattgcatctataaaaactgta09/30/1407/15/15146Genomicunknown
ss1431325031DDI|DDI_rs855913rev/TA/Cgacttatagcccactctaagctctatttaattgcatctataaaaactgta11/04/1411/05/14144Genomicunknown
ss1582458904EVA_GENOME_DK|EVA_GENOME_DK_snv_rs855913rev/TA/Cgacttatagcccactctaagctctatttaattgcatctataaaaactgta02/19/1502/20/15144Genomicunknown
ss1594537903EVA_DECODE|EVA_DECODE_7_148834595_1146103_rs855913rev/TA/Cgacttatagcccactctaagctctatttaattgcatctataaaaactgta03/02/1503/03/15144Genomicunknown
ss1619514410EVA_UK10K_ALSPAC|EVA_UK10K_ALSPAC_7_149203662_22130038rev/A/Cgacttatagcccactctaagctctatttaattgcatctataaaaactgta03/04/1503/04/15144Genomicunknown
ss1662508443EVA_UK10K_TWINSUK|EVA_UK10K_TWINSUK_7_149203662_22130038rev/A/Cgacttatagcccactctaagctctatttaattgcatctataaaaactgta03/04/1503/04/15144Genomicunknown
ss1712997646EVA_SVP|EVA_SVP_692013rev/TA/Cgacttatagcccactctaagctctatttaattgcatctataaaaactgta03/12/1503/12/15144Genomicunknown
ss1752670970ILLUMINA|OmniExpressExome-8v1-1_B_exm-rs855913-131_T_R_1990494526rev/TA/Cgacttatagcccactctaagctctatttaattgcatctataaaaactgta05/27/1506/09/15146Genomicunknown
ss1805287460HAMMER_LAB|Hsieh_4301022rev/TA/Cgacttatagcccactctaagctctatttaattgcatctataaaaactgta07/15/1507/16/15146Genomicunknown
ss1917823733ILLUMINA|HumanExome-12v1-1_B_exm-rs855913-131_T_R_1990494526rev/TA/Cgacttatagcccactctaagctctatttaattgcatctataaaaactgta10/16/1510/16/15147Genomicunknown
ss1928207146WEILL_CORNELL_DGM|SNV:chr7:149203662rev/TA/Cgacttatagcccactctaagctctatttaattgcatctataaaaactgta10/16/1510/17/15147Genomicunknown
ss1946224319ILLUMINA|HumanCoreExome-12v1-0_C_exm-rs855913-131_T_R_1990494526rev/TA/Cgacttatagcccactctaagctctatttaattgcatctataaaaactgta10/29/1510/29/15147Genomicunknown
ss1959063642ILLUMINA|exm-rs855913-131_T_R_1990494526rev/TA/Cgacttatagcccactctaagctctatttaattgcatctataaaaactgta11/13/1511/13/15147Genomicunknown
ss1970849354GENOMED|rs855913rev/TA/Cgacttatagcccactctaagctctatttaattgcatctataaaaactgta02/16/1602/16/16147Genomicunknown
ss2024793391JJLAB|SNP5295946rev/TA/Cgacttatagcccactctaagctctatttaattgcatctataaaaactgta08/29/1608/30/16149Genomicunknown
ss2094832253ILLUMINA|Immuno_BeadChip_11419691_B_rs855913-131_T_R_1866867522rev/TA/Cgacttatagcccactctaagctctatttaattgcatctataaaaactgta09/27/1609/27/16150Genomicunknown
ss2095204130ILLUMINA|InfiniumImmunoArray-24v2-0_A_rs855913-131_T_R_1866867522rev/TA/Cgacttatagcccactctaagctctatttaattgcatctataaaaactgta09/27/1609/27/16150Genomicunknown
ss2153017150USC_VALOUEV|NC_000007.13:g.149203662A>Crev/A/Cgacttatagcccactctaagctctatttaattgcatctataaaaactgta11/17/1611/17/16150Genomicunknown
ss2299006065HUMAN_LONGEVITY|HLI-7-149506571-A-Crev/A/Cgacttatagcccactctaagctctatttaattgcatctataaaaactgta11/18/1611/18/16150Genomicunknown
ss2468523839TOPMED|7_149203662_A/Crev/A/Cgacttatagcccactctaagctctatttaattgcatctataaaaactgta11/20/1611/20/16150Genomicunknown
ss2626881558SYSTEMSBIOZJU|SYSTEMSBIOZJU_SNV3385452rev/A/Cgacttatagcccactctaagctctatttaattgcatctataaaaactgta01/06/1701/06/17151Genomicunknown
ss2708742335GRF|rs855913rev/A/Cgacttatagcccactctaagctctatttaattgcatctataaaaactgta02/13/1702/13/17151Genomicunknown
ss2711124465ILLUMINA|Consortium-OncoArray_15047405_A_rs855913-131_T_R_1967919349rev/A/Cgacttatagcccactctaagctctatttaattgcatctataaaaactgta03/22/1703/22/17151Genomicunknown
ss2860725367GNOMAD|rs855913rev/A/Cgacttatagcccactctaagctctatttaattgcatctataaaaactgta05/19/1705/19/17151Genomicunknown
ss2985424700AFFY|Axiom_PsorMich_Affx-29953390rev/A/Cgacttatagcccactctaagctctatttaattgcatctataaaaactgta05/24/1705/24/17151Genomicunknown
ss2986055455AFFY|Axiom_Smokesc1_Affx-29953390rev/A/Cgacttatagcccactctaagctctatttaattgcatctataaaaactgta05/24/1705/24/17151Genomicunknown
ss3002276042SWEGEN|NC_000007.13:g.149203662A>Crev/A/Cgacttatagcccactctaagctctatttaattgcatctataaaaactgta05/30/1705/30/17151Genomicunknown
ss3026186016BIOINF_KMB_FNS_UNIBA|7.149506571A>Crev/A/Cgacttatagcccactctaagctctatttaattgcatctataaaaactgta07/05/1707/05/17151Genomicunknown
ss3347911396CSHL|rs855913rev/A/Cgacttatagcccactctaagctctatttaattgcatctataaaaactgta10/02/1710/02/17151Genomicunknown
ss3548145522TOPMED|TOPMed_freeze_5?chr7:149,506,571rev/A/Cgacttatagcccactctaagctctatttaattgcatctataaaaactgta10/06/1710/06/17151Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs855913|allelePos=713|totalLen=2522|taxid=9606|snpclass=1|alleles='G/T'|mol=Genomic|build=151
 TGAGATTTTT CAGGCCCCCC ATCTTTTCTA ATTTTCCCCA CTTTTTCTAT CAGTTATGGA
 AAGAGGTTAT TGAAGTCACC CACTCTTCAG AACAATTGGC TTTGAATGTT TAATTTTAAA
 ACAAATAAAA taaaatcacc cactatgatt atatatcaaa acactttttc tgttagttct
 cttaattatt gctttatcta ttttgagact gtgatattct gtgcactaaa atttaaattt
 gttttaatgt ttctgatgag ttgaccttgg tatcattatg aaatatctct atctgtagga
 atgcttcttg tttaaaatat aatttgtgga ctataacttt acgtagtttc tttttgttag
 gtttgcatgg tacatatttt ccctgtcatt ttatgttaca tatcttcagc ttcaaagtat
 ggctcttata aTTTCATTGT TTGGAGATTA TATTAATTCT AATTTTAGAA ATTTTTGTTT
 TTAATTACTT CATTTCACTT AATTACTGAT ATATTTGCTT TTATACGTTA TTATTATTAT
 TATTTGTTTT TTCATGTTCT CAACTCTTCT ATATTCCTTT TTCTCTACTT TTTAAAATCT
 TCTTTGCTAG TTATtgtagt gagctaaata gtgttccccc aaaattcatg tccatccaga
 acctcagaat gttaccttat ttggaaatac agtttttata gatgcaatta aa
 K
 tagagcttag agtgggctat aagtcaaatg atgataatgc ccttataaga gacagaaaag
 gacacacaga ctgcacagac acataggtaa ggccatgtga aggcaaaggc agggattgga
 gtgatgcagc cacaagccaa ggaatgccag aagccaccag aagctggaaa aggcaaggaa
 gcaccctctc cagaaccttt gatgggagcg tggccctgct cccaaaatgc cctgattttg
 gtcttctggc ctcctgagcc ataagagagt aaatttctgt tgttttaagc cagccagttt
 gtggtaatct gttatagtgt ccctacaaaa ctaatTAAGT TATATATTCT TTTACTATTC
 CTTCAGTGTT TTAGATGTTA CAATACACAA CCATGACTTA TTAAAATCTT ATTTAAGTTA
 CTACTCTTAA CGCCTCTTGG ACAATATAGG ATGTTACAAC ATTTTAAGTC CATTTACTCT
 CTATCTTGCC TTTTCTATTA TTATTATCAT ATTTTGAAAA ACCCAACATA TAATTTAAAG
 ATGAGACACG ttattattat tattattaat tattattatt GCTTTACATA GTCAAAATTA
 ATGCAGACTT ACATGGATAT TTACTTTTTT TGTTGCTCTT TATTCCTTTC TGCATTTACA
 CCTTCTTTCA TCTGACTCAT Ctttcttttg ccttaaaaac tccccctctt tattttcttt
 agtaaggata tgctgctaac aaattatctg tttttgcttt ttggaagtgt ctttatttta
 tgtttgtgtt tgaaggatac ttttgttggg tatagaattg tagattgtca gctattttct
 ttcagtcctt tcaaagtgtc attctgttgt cctttggctt ccatttttct gttgaaagtT
 AGTGATAGGT CTTATTTATG TTATTTTGAA ATGAATATGT CCTTTTTATC TGGCTACATA
 TAATATTTCC TTTTGTCCTT TGGTTTTCAG TTGTTTGTCT GTGAGTGTAG GCCTAGTTTC
 CTTTTTCGTA AGTGAGGGAT CTTTTTTTtt aatagactac ttttaagaac agttttaggt
 taacagcaaa attaaacaga aggtacagag agttcccatG ATAAATAAAC CATAGTATGT
 TTATCAGTTC ATATCATTCC CTTTTTATTT ATTCTAATTG GAATTTGTAA CTCATGCAAG
 TTGCGCTTGT CTCATTTCAT TTGTCTCCAA aaattattgg tcaatatctc tttatgtatt
 actcctacct cttttctctt tctcctgtct ttctgggttt ccgattatgc atatgttaga
 ggccatttct ccatgtccca tattctcttt tagattttat acatttttca ctatttgtct
 cgctgtgcat cagtctggat attttcttct gacctgcatt ctggtttact aattcttgct
 tcagctgtgc ccactgtgct gttaaactca tctactaagt tatttattta cattatAGAA
 TGACTGTTTG ATTCTTTTTA TCATATCTAA TTCTCCATTG AAATTATCCA TCAGGTCATT
 TATTAATCAC ATTTAAACTT ATAAATAACA GTTAACCTAA AGTCTATGTC TGGTAACTTT
 ACTATGTGGC TTTTTCATGA ATTTGTATCT ATCATCTGTG TTTCTCTTGA TTCTCACTCA
 ATTTTATCTT TTTGCATGTT TGGTTGTCTT TGATTGAGTG ACAGATACTA TATTTGAAAA
 TGTAATATTT TGAGGTTGTA CAAGATGTTC TCTTCTTTCA GAGAAATTTG CTTTTCCTCC
 TGTCAGGCA

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_007914 ABBA01033633 AC073314 AC073314.2
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) . See additional population frequency from 1000Genome [here] Note: rs855913 allele is reverse to the genome back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceG/G
G/T
T/T
HWPG
T
ss116379655YRI 2IG1.00000000 1.00000000
ss1327697074EAS 1008AF 1.00000000
EUR 1006AF 0.938399970.06160000
AFR 1322AF 0.997000040.00300000
AMR 694AF 0.971200050.02880000
SAS 978AF 0.993900000.00610000
ss139842100ENSEMBL_Venter 2IG 1.00000000 0.500000000.50000000
ss143083367ENSEMBL_Watson 2IG1.00000000 1.00000000
ss162835028CEUEuropean 2IG 1.00000000 0.500000000.50000000
ss165666242YRISub-Saharan African 2IG1.00000000 1.00000000
ss167249563PGP 2IG1.00000000 1.00000000
ss1718553HapMap-CEUEuropean 226IG0.929203510.07079646 1.000000000.964601760.03539823
HapMap-HCBAsian 90IG1.00000000 1.00000000
HapMap-JPTAsian 88IG1.00000000 1.00000000
HapMap-YRISub-Saharan African 118IG1.00000000 1.00000000
HAPMAP-ASW 96IG0.958333310.020833330.020833330.001000000.968750000.03125000
HAPMAP-GIH 176IG0.988636370.01136364 1.000000000.994318190.00568182
HAPMAP-LWK 180IG0.988888860.01111111 1.000000000.994444430.00555556
HAPMAP-MKK 286IG0.993007000.00699301 1.000000000.996503470.00349650
HAPMAP-TSI 176IG0.943181810.05681818 1.000000000.971590940.02840909
ss234221274pilot_1_CEU_low_coverage_panel 120AF 0.983333350.01666667
ss241121142pilot_1_CHB+JPT_low_coverage_panel 120AF 1.00000000
ss98350319J. Craig Venter 2IG 1.00000000 0.500000000.50000000

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
Additional Freq. Data
0.036+/-0.1290000ALFRED: The Allele Frequency Database

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqwith2hitWith1000GenomeData
DoubleHit found by:  NCBI
UNKNOWNUNKNOWNUNKNOWN

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