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Reference SNP (refSNP) Cluster Report: rs8066857                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:116/151
Map to Genome Build:108/Weight 1
Validation Status:byClusterbyFreqwith2hitWith1000GenomeData
Citation:PubMedLitVarNEW
Association:NHGRI GWAS PheGenI
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:C/T (FWD)
Allele Origin:
Ancestral Allele:C
Variation Viewer:link to VariationViewer
Clinical Significance:NA
MAF/MinorAlleleCount:T=0.3195/1600 (1000 Genomes)
T=0.2624/32947 (TOPMED)
HGVS Names
  • CM000679.2:g.72699964C>T
  • NC_000017.10:g.70696103C>T
  • NC_000017.11:g.72699964C>T
  • NM_001159770.1:c.692+36686G>A
  • NM_001352691.1:c.671+36686G>A
  • NM_001352692.1:c.692+36686G>A
  • NM_001352693.1:c.671+36686G>A
  • NM_139177.3:c.671+36686G>A
Links , Linkout
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss282835253 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs8066857 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss12388742WI_SSAHASNP|chr17.NT_010641.13_4588264byFreqfwd/BC/Tacaccaaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccagagtggt07/04/0304/07/04116Genomicunknown
ss23794986PERLEGEN|afd2492493byFreqfwd/BC/Tacaccaaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccagagtggt08/10/0409/13/04123Genomicunknown
ss66628462ILLUMINA|HumanHap300v1.1_rs8066857fwd/BC/Tacaccaaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccagagtggt11/09/0611/09/06127Genomicunknown
ss67867490ILLUMINA|HumanHap550v1.1_rs8066857fwd/BC/Tacaccaaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccagagtggt11/14/0611/14/06127Genomicunknown
ss68013902ILLUMINA|HumanHap650Yv1.0_rs8066857fwd/BC/Tacaccaaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccagagtggt11/14/0611/15/06127Genomicunknown
ss69201741PERLEGEN|PGP02492493byFreqfwd/BC/Tacaccaaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccagagtggt01/30/0703/31/08127Genomicunknown
ss70968350ILLUMINA|HumanHap550v3.0__rs8066857fwd/BC/Tacaccaaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccagagtggt04/20/0703/31/08130Genomicunknown
ss71578511ILLUMINA|HumanHap650Yv3.0_rs8066857fwd/BC/Tacaccaaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccagagtggt04/23/0704/23/07127Genomicunknown
ss75456388ILLUMINA|ILMN_Human_1M_rs8066857fwd/BC/Tacaccaaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccagagtggt08/28/0708/29/07129Genomicunknown
ss79280176ILLUMINA|HumanHap300v2.0_rs8066857fwd/BC/Tacaccaaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccagagtggt04/18/0711/18/07130Genomicunknown
ss84780235KRIBB_YJKIM|KHS807706fwd/BC/Tacaccaaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccagagtggt12/04/0712/08/07130Genomicunknown
ss85814639HGSV|Cor18517_SNV_20070510.chr17_68207698fwd/BC/Tacaccaaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccagagtggt12/06/0712/10/07130Genomicunknown
ss103360795BGI|BGI_rs8066857fwd/BC/Tacaccaaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccagagtggt06/06/0806/18/09131Genomicunknown
ss1099052261000GENOMES|CEU.trio.12.15.2008_3433309_chr17_68207698fwd/BC/Tacaccaaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccagagtggt12/16/0812/16/08130Genomicunknown
ss1138079701000GENOMES|NA19240_2008_12_16_3092379_chr17_68207698fwd/BC/Tacaccaaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccagagtggt12/18/0812/18/08130Genomicunknown
ss118120758ILLUMINA-UK|NA18507_000076055_NCBI36.1_chr17_68207698byFreqfwd/BC/Tacaccaaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccagagtggt01/20/0909/05/14130Genomic99 %
ss122895047ILLUMINA|HumanCNV370v1_C_rs8066857fwd/BC/Tacaccaaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccagagtggt04/14/0904/15/09131Genomicunknown
ss154466883ILLUMINA|Human610_Quadv1_B_rs8066857-127_B_F_1501900929fwd/BC/Tacaccaaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccagagtggt06/18/0906/20/09131Genomicunknown
ss154613481GMI|GMI_SNP_25222291fwd/BC/Tacaccaaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccagagtggt06/24/0906/24/09131Genomicunknown
ss159641421ILLUMINA|Human660W-Quad_v1_A_rs8066857-128_B_F_1501900929fwd/BC/Tacaccaaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccagagtggt07/06/0907/07/09131Genomicunknown
ss160946084ILLUMINA|HumanOmni1-Quad_v1-0_B_rs8066857-128_B_F_1501900929fwd/BC/Tacaccaaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccagagtggt08/04/0910/05/09131Genomicunknown
ss170162770COMPLETE_GENOMICS|NA19240_36_chr17_68207698fwd/BC/Tacaccaaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccagagtggt10/01/0910/01/09132Genomicunknown
ss172392858ILLUMINA|HumanCNV370-Quadv3_C_rs8066857-127_B_F_1501900929fwd/BC/Tacaccaaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccagagtggt10/01/0910/04/09132Genomicunknown
ss174701199ILLUMINA|Human1M-Duov3_B_rs8066857-127_B_F_1501900929fwd/BC/Tacaccaaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccagagtggt10/01/0910/05/09132Genomicunknown
ss202758217BUSHMAN|BUSHMAN-chr17-68207697fwd/BC/Tacaccaaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccagagtggt02/16/1003/08/10132Genomicunknown
ss2276468171000GENOMES|pilot_1_YRI_9456500_chr17_68207698fwd/C/Tacaccaaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccagagtggt04/22/1004/22/10132Genomicunknown
ss2373149141000GENOMES|pilot_1_CEU_6919543_chr17_68207698fwd/C/Tacaccaaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccagagtggt05/01/1005/01/10132Genomicunknown
ss2435948251000GENOMES|pilot_1_CHB+JPT_5479902_chr17_68207698fwd/C/Tacaccaaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccagagtggt05/01/1005/01/10132Genomicunknown
ss282835253GMI|GMI_AK_SNP_7155672fwd/C/Tacaccaaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccagagtggt12/16/1012/16/10137Genomicunknown
ss287212493GMI|GMI_NA10851_SNP_3225284fwd/C/Tacaccaaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccagagtggt12/17/1012/17/10138Genomicunknown
ss481772297ILLUMINA|HumanOmni2.5-4v1_B_rs8066857-128_B_F_1735643100fwd/BC/Taaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccaga01/30/1210/28/16137Genomicunknown
ss481804436ILLUMINA|HumanOmniExpress-12v1_C_rs8066857-131_B_F_1857479970fwd/BC/Taaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccaga01/30/1210/27/16137Genomicunknown
ss482766816ILLUMINA|HumanOmni1-Quad_v1-0_C_rs8066857-131_B_F_1865323308fwd/BC/Taaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccaga01/30/1208/28/15146Genomicunknown
ss485680846ILLUMINA|HumanOmni2.5-4v1_D_rs8066857-131_B_F_1857479970fwd/BC/Taaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccaga01/30/1210/27/16137Genomicunknown
ss491527094EXOME_CHIP|.GWAS._243320_chr_17_70696103fwd/BC/Tacaccaaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccagagtggt03/05/1203/06/12137Genomicunknown
ss537551291ILLUMINA|HumanOmni5-4v1_B_rs8066857-131_B_F_1866853755fwd/BC/Taaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccaga06/22/1208/29/15146Genomicunknown
ss565393340TISHKOFF|snp_chr17_70696103fwd/BC/Taaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccaga11/22/1211/23/12138Genomicunknown
ss661205718SSMP|17_70696103fwd/BC/Taaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccaga12/14/1202/14/15138Genomicunknown
ss778996695ILLUMINA|HumanOmni25Exome-8v1_A_rs8066857-131_B_F_1866853755fwd/BC/Taaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccaga05/30/1307/10/15146Genomicunknown
ss780687012ILLUMINA|HumanOmni25Exome-8v1_A_exm-rs8066857-131_B_F_1990485594fwd/BC/Taaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccaga05/30/1307/10/15146Genomicunknown
ss783286006ILLUMINA|HumanOmni2.5-4v1_H_rs8066857-131_B_F_1857479970fwd/BC/Taaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccaga05/30/1307/29/15146Genomicunknown
ss783360555ILLUMINA|HumanOmniExpressExome-8v1_A_exm-rs8066857-131_B_F_1990485594fwd/BC/Taaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccaga05/31/1306/19/15146Genomicunknown
ss784238830ILLUMINA|HumanOmniExpressExome-8v1_A_rs8066857-131_B_F_1866853755fwd/BC/Taaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccaga05/31/1306/19/15146Genomicunknown
ss825610694ILLUMINA|HumanCNV370v1_C_rs8066857-123_B_F_IFB1135298856:0fwd/BC/Taaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccaga06/24/1311/21/14144Genomicunknown
ss832547196ILLUMINA|HumanOmniExpress-12v1_H_rs8066857-131_B_F_1857479970fwd/BC/Taaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccaga09/17/1306/18/15146Genomicunknown
ss834459006ILLUMINA|HumanOmni2.5-8v1_A_rs8066857-131_B_F_1866853755fwd/BC/Taaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccaga09/18/1307/29/15146Genomicunknown
ss993313983EVA-GONL|EVA-GONL_rs8066857fwd/BC/Taaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccaga04/23/1404/30/14142Genomicunknown
ss1081201309JMKIDD_LAB|HGDP_WGS_chr17_70696103fwd/BC/Taaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccaga07/10/1407/12/14142Genomicunknown
ss13594658691000GENOMES|PHASE3_V1_73034000fwd/C/Taaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccaga08/16/1408/16/14142Genomicunknown
ss1397735039HAMMER_LAB|HAMMER_LAB_rs8066857fwd/BC/Taaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccaga09/30/1409/30/14146Genomicunknown
ss1428091164DDI|DDI_rs8066857fwd/BC/Taaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccaga11/04/1411/04/14144Genomicunknown
ss1578236239EVA_GENOME_DK|EVA_GENOME_DK_snv_rs8066857fwd/BC/Taaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccaga02/19/1502/19/15144Genomicunknown
ss1636066174EVA_UK10K_ALSPAC|EVA_UK10K_ALSPAC_17_70696103_40307817fwd/C/Taaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccaga03/04/1503/04/15144Genomicunknown
ss1679060207EVA_UK10K_TWINSUK|EVA_UK10K_TWINSUK_17_70696103_40307817fwd/C/Taaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccaga03/04/1503/04/15144Genomicunknown
ss1713596910EVA_SVP|EVA_SVP_1291277fwd/BC/Taaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccaga03/12/1503/12/15144Genomicunknown
ss1752238137ILLUMINA|OmniExpressExome-8v1-1_B_exm-rs8066857-131_B_F_1990485594fwd/BC/Taaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccaga05/27/1506/09/15146Genomicunknown
ss1752238138ILLUMINA|OmniExpressExome-8v1-1_B_rs8066857-131_B_F_1866853755fwd/BC/Taaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccaga05/27/1506/09/15146Genomicunknown
ss1808872290HAMMER_LAB|Hsieh_7900215fwd/BC/Taaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccaga07/15/1507/16/15146Genomicunknown
ss1917922080ILLUMINA|HumanExome-12v1-1_B_exm-rs8066857-131_B_F_1990485594fwd/BC/Taaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccaga10/16/1510/16/15147Genomicunknown
ss1936775493WEILL_CORNELL_DGM|SNV:chr17:70696103fwd/BC/Taaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccaga10/16/1510/19/15147Genomicunknown
ss1946468730ILLUMINA|HumanCoreExome-12v1-0_C_exm-rs8066857-131_B_F_1990485594fwd/BC/Taaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccaga10/29/1510/29/15147Genomicunknown
ss1959766413ILLUMINA|exm-rs8066857-131_B_F_1990485594fwd/BC/Taaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccaga11/13/1511/13/15147Genomicunknown
ss1968431300GENOMED|rs8066857fwd/BC/Taaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccaga02/16/1602/16/16147Genomicunknown
ss2029160223JJLAB|SNP9662778fwd/BC/Taaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccaga08/29/1608/31/16149Genomicunknown
ss2157644127USC_VALOUEV|NC_000017.10:g.70696103C>Tfwd/C/Taaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccaga11/17/1611/17/16150Genomicunknown
ss2218466239HUMAN_LONGEVITY|HLI-17-72699964-C-Tfwd/C/Taaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccaga11/18/1611/18/16150Genomicunknown
ss2383706525TOPMED|17_70696103_C/Tfwd/C/Taaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccaga11/19/1611/19/16150Genomicunknown
ss2629074776SYSTEMSBIOZJU|SYSTEMSBIOZJU_SNV6165895fwd/C/Taaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccaga01/06/1701/06/17151Genomicunknown
ss2633421401ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_rs8066857-131_B_F_18668537fwd/C/Taaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccaga02/02/1702/02/17151Genomicunknown
ss2702209971GRF|rs8066857fwd/C/Taaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccaga02/13/1702/13/17151Genomicunknown
ss2952251394GNOMAD|rs8066857fwd/C/Taaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccaga05/23/1705/23/17151Genomicunknown
ss2985103942AFFY|Axiom_PsorMich_Affx-14280539fwd/C/Taaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccaga05/24/1705/24/17151Genomicunknown
ss3015869992SWEGEN|NC_000017.10:g.70696103C>Tfwd/C/Taaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccaga05/30/1705/30/17151Genomicunknown
ss3021801470ILLUMINA|MEGA_Consortium_v2_15070954_A2_exm-rs8066857-131_B_F_1990485594fwd/C/Taaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccaga06/28/1706/28/17151Genomicunknown
ss3028402654BIOINF_KMB_FNS_UNIBA|17.72699964C>Tfwd/C/Taaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccaga07/05/1707/05/17151Genomicunknown
ss3268317466TOPMED|TOPMed_freeze_5?chr17:72,699,964fwd/C/Taaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccaga10/01/1710/01/17151Genomicunknown
ss3351831071CSHL|rs8066857fwd/C/Taaaaaaatcagtccacgaaaaacctaacacaggagctggcctcctccaga10/02/1710/02/17151Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs8066857|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='C/T'|mol=Genomic|build=151
 TCTGTTACTC TTAAGCACCC TACAGCAGCT CAGATGGAGG GAGAGGAGCT TCAGGAAGCC
 CCTGCAATGT GTGCTGGTCT ATCCATTCAT TCATTAATAA CAGCTGCCTC CTTGTCCCTC
 CTCTAAGGCT GAAACATATT TCTAGAAAGA GTTTAATCCA CTCCTTGCCT TGGGGCCATG
 CTGTAAACAC TTGGGATAGA TGCCTGCCTA TCCCACATTT AAAGATCTCT GGGGACAGAG
 CAACCCTGAG ACAGAGCTGG CAAGGGCGGC CAGGGCTGTG GATTTGTCAG CCAGGGACCA
 GGGGACAAAG CCTTCTGTGT TGCTCTGTGC TGTTAACTCC ACCGCATGTG ATTCATCTTA
 CTTGGCAGGG GATGGGTAGC TGAAATCCTG AAATCACTAG CTTTCGGGTT TGCTACCTAC
 ATCCGCCCCT CTGGAGGCCC TTTTCAGCAT CTGGGGTTTG GTAGAGACCC ACACCAAAAA
 AATCAGTCCA CGAAAAACCT
 Y
 AACACAGGAG CTGGCCTCCT CCAGAGTGGT ACTTCTGGTA CCTGACTTAT GGCAAGATAG
 ATCAGGGGTT TCTGCAAGAA CAGAAGCTCT TGGGAGACGA AGGTTGAATG TGTAATCTTG
 GTTGCCAGTC AGCCTGCCAT CGTGCGCCTG GGGCGAAGGG ACATGATGCT GCTGGCTTCT
 TTGGCGGGAG ATGGGCAAAG TTTGGGTCAG CATCTTTGTT AAAATCCGTA TTTCACATCC
 TGTGCTTGTT CTACTGCATT CTACCAGGAC AAAGAACTTG ACTGCAATTT TATTTTTTAA
 TAGTTTTCCA TTAACAGTTG GGGTGGAGCG GTCATTTTAA ATCTCAGAAT CATAAAGTCA
 TTTCTATCTA ATCTTTGGGC AGTAAGTACA GCTGCTTCTG AATCACATAC AGTTTGAAGG
 AAACCTAAAA TGCCAGGAGG ACATTTAACT ATTTTTATAT ACAACAGCCA ACATCTGGAT
 GTATTCAGTG GTTTCTGAAC

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_010641
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) . See additional population frequency from 1000Genome [here] back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceC
C/C
C/T
N
T
T/T
HWPC
N
T
ss118120758HapMap-CEUEuropean 226IG 0.681415920.27433628 0.044247790.438578000.81858408 0.18141593
HapMap-HCBAsian 86IG 0.348837200.51162791 0.139534890.654721000.60465115 0.39534885
HapMap-JPTAsian 172IG 0.465116290.44186047 0.093023261.000000000.68604654 0.31395349
HapMap-YRISub-Saharan African 226IG 0.336283180.43362832 0.230088500.200325000.55309737 0.44690266
HAPMAP-ASW 98IG 0.367346940.34693879 0.285714300.050043000.54081631 0.45918366
HAPMAP-CHBAsian 82IG 0.439024390.43902439 0.121951221.000000000.65853661 0.34146342
HAPMAP-CHD 170IG 0.435294120.45882353 0.105882351.000000000.66470587 0.33529413
HAPMAP-GIH 176IG 0.454545470.45454547 0.090909090.751830000.68181819 0.31818181
HAPMAP-LWK 180IG 0.455555560.41111112 0.133333340.438578000.66111112 0.33888888
HAPMAP-MEX 100IG 0.660000030.34000000 0.438578000.82999998 0.17000000
HAPMAP-MKK 286IG 0.538461570.38461539 0.076923081.000000000.73076922 0.26923078
HAPMAP-TSI 176IG 0.613636370.35227272 0.034090910.583882000.78977275 0.21022727
YRI 2IG 1.00000000 1.00000000
ENSEMBL_Venter 2IG 1.00000000 1.00000000
ss12388742CHMJAsian 74IG0.74324322 0.013513510.24324325 0.743243220.013513510.24324325
ss1359465869EAS 1008AF 0.66070002 0.33930001
EUR 1006AF 0.76739997 0.23260000
AFR 1322AF 0.59380001 0.40619999
AMR 694AF 0.80839998 0.19159999
SAS 978AF 0.63800001 0.36200002
ss170162770YRISub-Saharan African 2IG 1.00000000 1.00000000
ss227646817pilot_1_YRI_low_coverage_panel 118AF 0.54237288 0.45762712
ss237314914pilot_1_CEU_low_coverage_panel 120AF 0.77499998 0.22499999
ss23794986AFD_EUR_PANELEuropean 48IG 0.625000000.33333334 0.041666671.000000000.79166669 0.20833333
AFD_AFR_PANELAfrican American 44IG 0.318181810.50000000 0.181818191.000000000.56818181 0.43181819
AFD_CHN_PANELAsian 48IG 0.416666660.45833334 0.125000001.000000000.64583331 0.35416666
ss243594825pilot_1_CHB+JPT_low_coverage_panel 120AF 0.70833331 0.29166666
ss69201741HapMap-CEUEuropean 120IG 0.683333340.26666668 0.050000000.402784000.81666666 0.18333334
HapMap-HCBAsian 90IG 0.377777790.48888889 0.133333341.000000000.62222224 0.37777779
HapMap-JPTAsian 90IG 0.466666670.48888889 0.044444450.250592000.71111113 0.28888890
HapMap-YRISub-Saharan African 120IG 0.300000010.46666667 0.233333330.654721000.53333336 0.46666667

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
Additional Freq. Data
0.435+/-0.1680000ALFRED: The Allele Frequency Database

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqwith2hitWith1000GenomeData
DoubleHit found by:  BCM_SSAHASNP
UNKNOWNUNKNOWNUNKNOWN

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