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Reference SNP (refSNP) Cluster Report: rs806606                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:86/151
Map to Genome Build:108/Weight 1
Validation Status:byClusterbyFreqwithHapMapFreqWith1000GenomeData
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:C/T (FWD)
Allele Origin:
Ancestral Allele:C
Variation Viewer:link to VariationViewer
Clinical Significance:NA
MAF/MinorAlleleCount:T=0.1454/728 (1000 Genomes)
T=0.1571/19723 (TOPMED)
HGVS Names
  • CM000668.2:g.85974061T>C
  • NC_000006.11:g.86683779T>C
  • NC_000006.12:g.85974061T>C
  • XR_001744239.1:n.1570-19319T>C
  • XR_001744240.1:n.5456-19319T>C
  • XR_001744243.1:n.1433-19319T>C
  • XR_241869.1:n.138-19319T>C
Links , Linkout
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss1643462 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs806606 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss1037766KWOK|OVLP-000804-503393fwd/BC/Tcataatggtacctcactccacttgccttctgtttacaaaaaagatctagttgcaggatgg09/02/0010/10/0386Genomic97 %
ss1643462KWOK|OVLP-000925-473641byFreqfwd/BC/Tcataatggtacctcactccacttgccttctgtttacaaaaaagatctagttgcaggatgg10/04/0010/25/0687Genomic97 %
ss3944510SC_JCM|AL356601.8_29822fwd/BC/Tcataatggtacctcactccacttgccttctgtttacaaaaaagatctagttgcaggatgg09/25/0110/10/03126Genomicunknown
ss19655673CSHL-HAPMAP|CSHL-HuDD-200402.chr6.NT_007299.12_24503950fwd/BC/Tcataatggtacctcactccacttgccttctgtttacaaaaaagatctagttgcaggatgg02/20/0403/04/04120Genomicunknown
ss22397638SSAHASNP|WGSA-200403-chr6.chr6.NT_007299.12_24503950fwd/BC/Tcataatggtacctcactccacttgccttctgtttacaaaaaagatctagttgcaggatgg03/21/0403/21/04121Genomicunknown
ss42748072ABI|hCV9473818fwd/BC/Tcataatggtacctcactccacttgccttctgtttacaaaaaagatctagttgcaggatgg07/18/0507/18/05126Genomicunknown
ss66853377ILLUMINA|HumanHap300v1.1_rs806606fwd/TC/Tcataatggtacctcactccacttgccttctgtttacaaaaaagatctagttgcaggatgg11/09/0611/09/06127Genomicunknown
ss67867374ILLUMINA|HumanHap550v1.1_rs806606fwd/BC/Tcataatggtacctcactccacttgccttctgtttacaaaaaagatctagttgcaggatgg11/14/0611/14/06127Genomicunknown
ss68013835ILLUMINA|HumanHap650Yv1.0_rs806606fwd/BC/Tcataatggtacctcactccacttgccttctgtttacaaaaaagatctagttgcaggatgg11/14/0611/15/06127Genomicunknown
ss68982766PERLEGEN|PGP05706525byFreqfwd/BC/Tcataatggtacctcactccacttgccttctgtttacaaaaaagatctagttgcaggatgg01/30/0708/14/07127Genomicunknown
ss70968292ILLUMINA|HumanHap550v3.0__rs806606fwd/BC/Tcataatggtacctcactccacttgccttctgtttacaaaaaagatctagttgcaggatgg04/20/0703/31/08130Genomicunknown
ss71578444ILLUMINA|HumanHap650Yv3.0_rs806606fwd/BC/Tcataatggtacctcactccacttgccttctgtttacaaaaaagatctagttgcaggatgg04/23/0704/23/07127Genomicunknown
ss75882377ILLUMINA|ILMN_Human_1M_rs806606fwd/BC/Tcataatggtacctcactccacttgccttctgtttacaaaaaagatctagttgcaggatgg08/28/0708/29/07129Genomicunknown
ss77569495HGSV|Cor12156_SNV_20070510.chr6_86740498fwd/BC/Tcataatggtacctcactccacttgccttctgtttacaaaaaagatctagttgcaggatgg10/09/0710/13/07129Genomicunknown
ss79038852HGSV|Cor18507_SNV_20070510.chr6_86740498fwd/BC/Tcataatggtacctcactccacttgccttctgtttacaaaaaagatctagttgcaggatgg10/19/0710/21/07129Genomicunknown
ss79280140ILLUMINA|HumanHap300v2.0_rs806606fwd/BC/Tcataatggtacctcactccacttgccttctgtttacaaaaaagatctagttgcaggatgg04/18/0711/18/07130Genomicunknown
ss83568466KRIBB_YJKIM|KHS491804fwd/BC/Tcataatggtacctcactccacttgccttctgtttacaaaaaagatctagttgcaggatgg12/04/0712/05/07130Genomicunknown
ss83599764HGSV|Cor18956_SNV_20070510.chr6_86740498fwd/BC/Tcataatggtacctcactccacttgccttctgtttacaaaaaagatctagttgcaggatgg11/30/0712/05/07130Genomicunknown
ss84059208HGSV|Cor19240_SNV_20070510.chr6_86740498fwd/BC/Tcataatggtacctcactccacttgccttctgtttacaaaaaagatctagttgcaggatgg11/30/0712/06/07130Genomicunknown
ss85528144HGSV|Cor19129_SNV_20070510.chr6_86740498fwd/BC/Tcataatggtacctcactccacttgccttctgtttacaaaaaagatctagttgcaggatgg12/06/0712/09/07130Genomicunknown
ss93509650BCMHGSC_JDW|JWB-2178860fwd/BC/Tcataatggtacctcactccacttgccttctgtttacaaaaaagatctagttgcaggatgg02/26/0803/04/08129Genomicunknown
ss98412187HUMANGENOME_JCVI|1103652925490fwd/BC/Tcataatggtacctcactccacttgccttctgtttacaaaaaagatctagttgcaggatgg03/31/0803/31/08130Genomicunknown
ss106018011BGI|BGI_rs806606fwd/BC/Tcataatggtacctcactccacttgccttctgtttacaaaaaagatctagttgcaggatgg09/12/0806/19/09130Genomicunknown
ss1104775661000GENOMES|CEU.trio.12.15.2008_1566363_chr6_86740498fwd/BC/Tcataatggtacctcactccacttgccttctgtttacaaaaaagatctagttgcaggatgg12/17/0812/17/08130Genomicunknown
ss1146918551000GENOMES|NA19240_2008_12_16_1404179_chr6_86740498fwd/BC/Tcataatggtacctcactccacttgccttctgtttacaaaaaagatctagttgcaggatgg12/18/0812/18/08130Genomicunknown
ss116588755ILLUMINA-UK|NA18507_000122136_NCBI36.1_chr6_86740498fwd/BC/Tcataatggtacctcactccacttgccttctgtttacaaaaaagatctagttgcaggatgg01/17/0901/17/09130Genomic99 %
ss122894833ILLUMINA|HumanCNV370v1_C_rs806606fwd/BC/Tcataatggtacctcactccacttgccttctgtttacaaaaaagatctagttgcaggatgg04/14/0904/15/09131Genomicunknown
ss144120711ENSEMBL|ENSSNP13090443fwd/BC/Tcataatggtacctcactccacttgccttctgtttacaaaaaagatctagttgcaggatgg06/05/0906/06/09131Genomicunknown
ss154466820ILLUMINA|Human610_Quadv1_B_rs806606-128_B_F_1501875080fwd/BC/Tcataatggtacctcactccacttgccttctgtttacaaaaaagatctagttgcaggatgg06/18/0906/20/09131Genomicunknown
ss159641361ILLUMINA|Human660W-Quad_v1_A_rs806606-128_B_F_1501875080fwd/BC/Tcataatggtacctcactccacttgccttctgtttacaaaaaagatctagttgcaggatgg07/06/0907/07/09131Genomicunknown
ss162576268COMPLETE_GENOMICS|NA07022_36_chr6_86740498fwd/BC/Tcataatggtacctcactccacttgccttctgtttacaaaaaagatctagttgcaggatgg09/28/0909/29/09132Genomicunknown
ss163894539COMPLETE_GENOMICS|NA19240_36_chr6_86740498fwd/BC/Tcataatggtacctcactccacttgccttctgtttacaaaaaagatctagttgcaggatgg09/29/0909/29/09132Genomicunknown
ss166973116COMPLETE_GENOMICS|NA20431_36_chr6_86740498fwd/BC/Tcataatggtacctcactccacttgccttctgtttacaaaaaagatctagttgcaggatgg09/30/0909/30/09132Genomicunknown
ss172392692ILLUMINA|HumanCNV370-Quadv3_C_rs806606-128_B_F_1501875080fwd/BC/Tcataatggtacctcactccacttgccttctgtttacaaaaaagatctagttgcaggatgg10/01/0910/04/09132Genomicunknown
ss174700641ILLUMINA|Human1M-Duov3_B_rs806606-128_B_F_1501875080fwd/BC/Tcataatggtacctcactccacttgccttctgtttacaaaaaagatctagttgcaggatgg10/01/0910/05/09132Genomicunknown
ss202128230BUSHMAN|BUSHMAN-chr6-86740497fwd/BC/Tcataatggtacctcactccacttgccttctgtttacaaaaaagatctagttgcaggatgg02/16/1003/08/10132Genomicunknown
ss2225183461000GENOMES|pilot_1_YRI_4328029_chr6_86740498fwd/C/Tcataatggtacctcactccacttgccttctgtttacaaaaaagatctagttgcaggatgg04/22/1004/22/10132Genomicunknown
ss2335694571000GENOMES|pilot_1_CEU_3174086_chr6_86740498fwd/C/Tcataatggtacctcactccacttgccttctgtttacaaaaaagatctagttgcaggatgg05/01/1005/01/10132Genomicunknown
ss2406067491000GENOMES|pilot_1_CHB+JPT_2491826_chr6_86740498fwd/C/Tcataatggtacctcactccacttgccttctgtttacaaaaaagatctagttgcaggatgg05/01/1005/01/10132Genomicunknown
ss254522384BL|SNP110159_6_86740498fwd/BC/Tcataatggtacctcactccacttgccttctgtttacaaaaaagatctagttgcaggatgg08/19/1008/19/10134Genomicunknown
ss278905694GMI|GMI_AK_SNP_3225935fwd/C/Tcataatggtacctcactccacttgccttctgtttacaaaaaagatctagttgcaggatgg12/16/1012/16/10137Genomicunknown
ss285454664GMI|GMI_NA10851_SNP_1467437fwd/C/Tcataatggtacctcactccacttgccttctgtttacaaaaaagatctagttgcaggatgg12/17/1012/17/10138Genomicunknown
ss293655544PJP|SNP_3161902_chr6_86740498fwd/C/Tcataatggtacctcactccacttgccttctgtttacaaaaaagatctagttgcaggatgg01/21/1101/21/11134Genomicunknown
ss481771950ILLUMINA|HumanOmni2.5-4v1_B_rs806606-128_B_F_1771750702fwd/BC/Ttggtacctcactccacttgccttctgtttacaaaaaagatctagttgcag01/30/1210/28/16137Genomicunknown
ss481804093ILLUMINA|HumanOmniExpress-12v1_C_rs806606-131_B_F_1857479876fwd/BC/Ttggtacctcactccacttgccttctgtttacaaaaaagatctagttgcag01/30/1210/27/16137Genomicunknown
ss485680671ILLUMINA|HumanOmni2.5-4v1_D_rs806606-131_B_F_1857479876fwd/BC/Ttggtacctcactccacttgccttctgtttacaaaaaagatctagttgcag01/30/1210/28/16137Genomicunknown
ss537551172ILLUMINA|HumanOmni5-4v1_B_rs806606-131_B_F_1866853636fwd/BC/Ttggtacctcactccacttgccttctgtttacaaaaaagatctagttgcag06/22/1208/29/15146Genomicunknown
ss559346545TISHKOFF|snp_chr6_86683779fwd/BC/Ttggtacctcactccacttgccttctgtttacaaaaaagatctagttgcag11/22/1211/23/12138Genomicunknown
ss653324337SSMP|6_86683779fwd/BC/Ttggtacctcactccacttgccttctgtttacaaaaaagatctagttgcag12/14/1202/11/15138Genomicunknown
ss778996669ILLUMINA|HumanOmni25Exome-8v1_A_rs806606-131_B_F_1866853636fwd/BC/Ttggtacctcactccacttgccttctgtttacaaaaaagatctagttgcag05/30/1307/09/15142Genomicunknown
ss783285919ILLUMINA|HumanOmni2.5-4v1_H_rs806606-131_B_F_1857479876fwd/BC/Ttggtacctcactccacttgccttctgtttacaaaaaagatctagttgcag05/30/1307/28/15142Genomicunknown
ss784238746ILLUMINA|HumanOmniExpressExome-8v1_A_rs806606-131_B_F_1866853636fwd/BC/Ttggtacctcactccacttgccttctgtttacaaaaaagatctagttgcag05/31/1306/19/15142Genomicunknown
ss825610658ILLUMINA|HumanCNV370v1_C_rs806606-126_B_F_IFB1137734075:0fwd/BC/Ttggtacctcactccacttgccttctgtttacaaaaaagatctagttgcag06/24/1311/21/14144Genomicunknown
ss832547109ILLUMINA|HumanOmniExpress-12v1_H_rs806606-131_B_F_1857479876fwd/BC/Ttggtacctcactccacttgccttctgtttacaaaaaagatctagttgcag09/17/1306/19/15144Genomicunknown
ss833152212ILLUMINA|Human660W-Quad_v1_C_rs806606-131_B_F_1857479876fwd/BC/Ttggtacctcactccacttgccttctgtttacaaaaaagatctagttgcag09/18/1307/02/15142Genomicunknown
ss833743040ILLUMINA|Human660W-Quad_v1_H_rs806606-131_B_F_1857479876fwd/BC/Ttggtacctcactccacttgccttctgtttacaaaaaagatctagttgcag09/18/1307/02/15142Genomicunknown
ss834458979ILLUMINA|HumanOmni2.5-8v1_A_rs806606-131_B_F_1866853636fwd/BC/Ttggtacctcactccacttgccttctgtttacaaaaaagatctagttgcag09/18/1307/28/15142Genomicunknown
ss983189378EVA-GONL|EVA-GONL_rs806606fwd/BC/Ttggtacctcactccacttgccttctgtttacaaaaaagatctagttgcag04/23/1404/24/14142Genomicunknown
ss1073801279JMKIDD_LAB|HGDP_WGS_chr6_86683779fwd/BC/Ttggtacctcactccacttgccttctgtttacaaaaaagatctagttgcag07/10/1407/11/14142Genomicunknown
ss13210984091000GENOMES|PHASE3_V1_33096017fwd/C/Ttggtacctcactccacttgccttctgtttacaaaaaagatctagttgcag08/16/1408/16/14142Genomicunknown
ss1397462137HAMMER_LAB|HAMMER_LAB_rs806606fwd/BC/Ttggtacctcactccacttgccttctgtttacaaaaaagatctagttgcag09/30/1407/15/15146Genomicunknown
ss1430808267DDI|DDI_rs806606fwd/BC/Ttggtacctcactccacttgccttctgtttacaaaaaagatctagttgcag11/04/1411/05/14144Genomicunknown
ss1581775714EVA_GENOME_DK|EVA_GENOME_DK_snv_rs806606fwd/BC/Ttggtacctcactccacttgccttctgtttacaaaaaagatctagttgcag02/19/1502/20/15144Genomicunknown
ss1592739693EVA_DECODE|EVA_DECODE_6_86740498_703736_rs806606fwd/BC/Ttggtacctcactccacttgccttctgtttacaaaaaagatctagttgcag03/02/1503/03/15144Genomicunknown
ss1616067688EVA_UK10K_ALSPAC|EVA_UK10K_ALSPAC_6_86683779_18336132fwd/C/Ttggtacctcactccacttgccttctgtttacaaaaaagatctagttgcag03/04/1503/04/15144Genomicunknown
ss1659061721EVA_UK10K_TWINSUK|EVA_UK10K_TWINSUK_6_86683779_18336132fwd/C/Ttggtacctcactccacttgccttctgtttacaaaaaagatctagttgcag03/04/1503/04/15144Genomicunknown
ss1712878973EVA_SVP|EVA_SVP_573340fwd/BC/Ttggtacctcactccacttgccttctgtttacaaaaaagatctagttgcag03/12/1503/12/15144Genomicunknown
ss1752650664ILLUMINA|OmniExpressExome-8v1-1_B_rs806606-131_B_F_1866853636fwd/BC/Ttggtacctcactccacttgccttctgtttacaaaaaagatctagttgcag05/27/1506/09/15146Genomicunknown
ss1804542634HAMMER_LAB|Hsieh_3553298fwd/BC/Ttggtacctcactccacttgccttctgtttacaaaaaagatctagttgcag07/15/1507/15/15146Genomicunknown
ss1926447812WEILL_CORNELL_DGM|SNV:chr6:86683779fwd/BC/Ttggtacctcactccacttgccttctgtttacaaaaaagatctagttgcag10/16/1510/17/15147Genomicunknown
ss1946184766ILLUMINA|HumanCoreExome-12v1-0_C_rs806606-131_B_F_1866853636fwd/BC/Ttggtacctcactccacttgccttctgtttacaaaaaagatctagttgcag10/29/1510/29/15147Genomicunknown
ss1958929936ILLUMINA|rs806606-131_B_F_1908579263fwd/BC/Ttggtacctcactccacttgccttctgtttacaaaaaagatctagttgcag11/13/1511/13/15147Genomicunknown
ss1970456729GENOMED|rs806606fwd/BC/Ttggtacctcactccacttgccttctgtttacaaaaaagatctagttgcag02/16/1602/16/16147Genomicunknown
ss2023867056JJLAB|SNP4369611fwd/BC/Ttggtacctcactccacttgccttctgtttacaaaaaagatctagttgcag08/29/1608/30/16149Genomicunknown
ss2152059331USC_VALOUEV|NC_000006.11:g.86683779T>Cfwd/C/Ttggtacctcactccacttgccttctgtttacaaaaaagatctagttgcag11/17/1611/17/16150Genomicunknown
ss2285874061HUMAN_LONGEVITY|HLI-6-85974061-T-Cfwd/C/Ttggtacctcactccacttgccttctgtttacaaaaaagatctagttgcag11/18/1611/18/16150Genomicunknown
ss2454509829TOPMED|6_86683779_T/Cfwd/C/Ttggtacctcactccacttgccttctgtttacaaaaaagatctagttgcag11/20/1611/20/16150Genomicunknown
ss2626429128SYSTEMSBIOZJU|SYSTEMSBIOZJU_SNV2797079fwd/C/Ttggtacctcactccacttgccttctgtttacaaaaaagatctagttgcag01/06/1701/06/17151Genomicunknown
ss2634477664ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_rs806606-131_B_F_186685363fwd/C/Ttggtacctcactccacttgccttctgtttacaaaaaagatctagttgcag02/02/1702/02/17151Genomicunknown
ss2707676811GRF|rs806606fwd/C/Ttggtacctcactccacttgccttctgtttacaaaaaagatctagttgcag02/13/1702/13/17151Genomicunknown
ss2711083518ILLUMINA|Consortium-OncoArray_15047405_A_rs806606-131_B_F_2196889280fwd/C/Ttggtacctcactccacttgccttctgtttacaaaaaagatctagttgcag03/22/1703/22/17151Genomicunknown
ss2841725812GNOMAD|rs806606fwd/C/Ttggtacctcactccacttgccttctgtttacaaaaaagatctagttgcag05/18/1705/18/17151Genomicunknown
ss2999477162SWEGEN|NC_000006.11:g.86683779T>Cfwd/C/Ttggtacctcactccacttgccttctgtttacaaaaaagatctagttgcag05/30/1705/30/17151Genomicunknown
ss3022642675ILLUMINA|MEGA_Consortium_v2_15070954_A2_rs806606-138_B_F_2276734870fwd/C/Ttggtacctcactccacttgccttctgtttacaaaaaagatctagttgcag06/28/1706/28/17151Genomicunknown
ss3025727195BIOINF_KMB_FNS_UNIBA|6.85974061T>Cfwd/C/Ttggtacctcactccacttgccttctgtttacaaaaaagatctagttgcag07/05/1707/05/17151Genomicunknown
ss3347093558CSHL|rs806606fwd/C/Ttggtacctcactccacttgccttctgtttacaaaaaagatctagttgcag10/02/1710/02/17151Genomicunknown
ss3503999154TOPMED|TOPMed_freeze_5?chr6:85,974,061fwd/C/Ttggtacctcactccacttgccttctgtttacaaaaaagatctagttgcag10/05/1710/05/17151Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs806606|allelePos=428|totalLen=1133|taxid=9606|snpclass=1|alleles='C/T'|mol=Genomic|build=151
 AAAATCTAAT AAGGGCTGAG GTCGGTCTGC ATTAATTTCT CATTCCCATG ATTTAAGGCT
 TCGGGACAAA TGAGCCACTC CTAGTGGTTG GAACTGAATA GAATTTGTCA AGGACATATT
 ATGGGGTTCC TCTAAGGCAA ACTGGTGGCT AGCTGCATTA AGAAAAACTC GTGCTCCAGG
 GACAGGAAGC AGGGAGCAAT GGGGTCTCTT GGCTCTTTGG AAGctctttt atttgttccc
 ttttgggctg tagagcccag agaggcttca gcattagtag gagaaggagc tgtggggagg
 cctgggtatg ggagtagact ttgaggactc ctcgtggggt gcaggttaca tgtcttacac
 gatcatgggt taccccttaa tgagaagaag gtctgaacat aatggtacct cactccactt
 gccttct
 Y
 gtttacaaaa aagatctagt tgcaggatgg tattatagtt tatacttccc tcaggtggcc
 attgttctcc tcctggaaga ggatattgtg gtcaggcagt gctgcagaaa aatatgagcc
 gcttcttttt caatgtctgg ggaccaaatt ggtcccagtt attcagaata cacctcaggg
 gtgactttgc tttggaggga acatctccca tctgaaagga gagcataggg atgcccacac
 ccctagtcat tccctgtgga cactggttct agggagttct atactgtttt agtgtccttt
 ttccagggtg cgaaatcacc catggaacac tgcttatcag atttaattgt gcttaccaac
 gtagcagttt caactacagt cttttccctc ccttcttagc cacaaagaag gaggccaggc
 tgctgggttt aatggccttt taccagcacg cctgaaagag tttttttttc ctgtgagtgg
 gttctaagtc cagggtgtat tcttaGGTGG TTGACGAGGC TCCAGTTGGC ATATTTCTGA
 GCTTGAAACT GCCCCAGTAA GATAAACTCC TTAAAGATTG TACATAGACA TAGCAATTTT
 AAGGTGGGGG GCAACAGGGC ATTGGGCCAA GGTTGAAATA GCATCTCATG TACTAAGGCC
 TTTTGTCCCC GCTTTCCATC ATAAGAATAT GACTTTTGAT CTCCC

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_007299 ABBA01040479 AC027733 AL356601.3 AL356601.4 AL450338 AL512364
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) . See additional population frequency from 1000Genome [here] back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceC/C
C/T
T/T
HWPC
T
ss116588755YRI 2IG1.00000000 1.00000000
ss1321098409EAS 1008AF 0.897800030.10220000
EUR 1006AF 0.784299970.21570000
AFR 1322AF 0.944800020.05520000
AMR 694AF 0.814100030.18590000
SAS 978AF 0.789399980.21060000
ss144120711ENSEMBL_Watson 2IG 1.00000000 0.500000000.50000000
ss162576268CEUEuropean 2IG 1.00000000 0.500000000.50000000
ss163894539YRISub-Saharan African 2IG1.00000000 1.00000000
ss1643462HapMap-CEUEuropean 216IG0.592592600.379629640.027777780.250592000.782407400.21759260
HapMap-HCBAsian 82IG0.780487780.21951219 0.751830000.890243890.10975610
HapMap-JPTAsian 168IG0.821428600.17857143 0.751830000.910714270.08928572
HapMap-YRISub-Saharan African 222IG0.873873890.12612613 1.000000000.936936910.06306306
HAPMAP-ASW 98IG0.836734710.16326530 1.000000000.918367330.08163265
HAPMAP-CHBAsian 82IG0.707317050.195121940.097560970.020022000.804878060.19512194
HAPMAP-GIH 174IG0.586206910.367816090.045977010.751830000.770114960.22988506
HAPMAP-LWK 176IG0.897727250.10227273 1.000000000.948863630.05113636
HAPMAP-MKK 286IG0.916083930.08391608 1.000000000.958041970.04195804
HAPMAP-TSI 172IG0.639534890.290697660.069767450.200325000.784883740.21511628
ss166973116PGP 2IG1.00000000 1.00000000
ss222518346pilot_1_YRI_low_coverage_panel 118AF 0.932203410.06779661
ss233569457pilot_1_CEU_low_coverage_panel 120AF 0.783333360.21666667
ss240606749pilot_1_CHB+JPT_low_coverage_panel 120AF 0.866666670.13333334
ss68982766HapMap-CEUEuropean 120IG0.500000000.483333320.016666670.050043000.741666670.25833333
HapMap-HCBAsian 90IG0.733333350.26666668 0.654721000.866666670.13333334
HapMap-JPTAsian 90IG0.755555570.24444444 0.654721000.877777760.12222222
HapMap-YRISub-Saharan African 120IG0.850000020.15000001 1.000000000.925000010.07500000
ss98412187J. Craig Venter 2IG1.00000000 1.00000000

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
Additional Freq. Data
0.248+/-0.2500000ALFRED: The Allele Frequency Database

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqwithHapMapFreqWith1000GenomeDataUNKNOWNUNKNOWNUNKNOWN

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