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Reference SNP (refSNP) Cluster Report: rs7930940                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:116/151
Map to Genome Build:108/Weight 1
Validation Status:byClusterbyFreqwith2hitwithHapMapFreqWith1000GenomeData
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:A/C/G (FWD)
Allele Origin:
Ancestral Allele:G
Variation Viewer:link to VariationViewer
Clinical Significance:NA
MAF/MinorAlleleCount:A=0.2524/1264 (1000 Genomes)
A=0.3353/42102 (TOPMED)
HGVS Names
  • CM000673.2:g.60758313A>C
  • CM000673.2:g.60758313A>G
  • NC_000011.10:g.60758313A>C
  • NC_000011.10:g.60758313A>G
  • NC_000011.9:g.60525786A>G
  • NM_001098835.1:c.-29+1255A>C
  • NM_001098835.1:c.-29+1255A>G
  • NM_001278242.1:c.-29+1255A>C
  • NM_001278242.1:c.-29+1255A>G
  • NM_152717.2:c.-21+1255A>C
  • NM_152717.2:c.-21+1255A>G
  • NR_103481.1:n.192+1255A>C
  • NR_103481.1:n.192+1255A>G
Links
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss281032676 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs7930940 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss12131508WI_SSAHASNP|chr11.NT_033903.5_5627051fwd/TA/Gatcccagggttcctttataacagttaaacaggtgccacagaaacatacattaaatttatc07/04/0310/10/03116Genomicunknown
ss16217589SC_SNP|NT_033903.6_5698828fwd/TA/Gatcccagggttcctttataacagttaaacaggtgccacagaaacatacattaaatttatc11/18/0311/22/03120Genomicunknown
ss17440980CSHL-HAPMAP|CSHL-HuCC-200402.chr11.NT_033903.6_5698828fwd/TA/Gatcccagggttcctttataacagttaaacaggtgccacagaaacatacattaaatttatc02/19/0410/26/06120Genomicunknown
ss19219626CSHL-HAPMAP|CSHL-HuDD-200402.chr11.NT_033903.6_5698828fwd/TA/Gatcccagggttcctttataacagttaaacaggtgccacagaaacatacattaaatttatc02/20/0403/04/04120Genomicunknown
ss20767105SSAHASNP|WGSA-200403-chr11.chr11.NT_033903.6_5698828fwd/TA/Gatcccagggttcctttataacagttaaacaggtgccacagaaacatacattaaatttatc03/19/0403/19/04121Genomicunknown
ss40074879ABI|hCV29370402byFreqfwd/TA/Gatcccagggttcctttataacagttaaacaggtgccacagaaacatacattaaatttatc07/16/0511/02/06126Genomicunknown
ss66627975ILLUMINA|HumanHap300v1.1_rs7930940fwd/TA/Gatcccagggttcctttataacagttaaacaggtgccacagaaacatacattaaatttatc11/09/0611/09/06127Genomicunknown
ss67849408ILLUMINA|HumanHap550v1.1_rs7930940fwd/TA/Gatcccagggttcctttataacagttaaacaggtgccacagaaacatacattaaatttatc11/14/0611/14/06127Genomicunknown
ss68002780ILLUMINA|HumanHap650Yv1.0_rs7930940fwd/TA/Gatcccagggttcctttataacagttaaacaggtgccacagaaacatacattaaatttatc11/14/0611/15/06127Genomicunknown
ss69318587PERLEGEN|PGP09656731byFreqfwd/TA/Gatcccagggttcctttataacagttaaacaggtgccacagaaacatacattaaatttatc01/30/0703/31/08127Genomicunknown
ss70959243ILLUMINA|HumanHap550v3.0__rs7930940rev/BC/Tgataaatttaatgtatgtttctgtggcacctgtttaactgttataaaggaaccctgggat04/20/0703/31/08130Genomicunknown
ss71567339ILLUMINA|HumanHap650Yv3.0_rs7930940fwd/TA/Gatcccagggttcctttataacagttaaacaggtgccacagaaacatacattaaatttatc04/23/0704/23/07127Genomicunknown
ss75460674ILLUMINA|ILMN_Human_1M_rs7930940fwd/TA/Gatcccagggttcctttataacagttaaacaggtgccacagaaacatacattaaatttatc08/28/0708/29/07129Genomicunknown
ss77280734HGSV|Cor12156_SNV_20070510.chr11_60282362fwd/TA/Gatcccagggttcctttataacagttaaacaggtgccacagaaacatacattaaatttatc10/09/0710/12/07129Genomicunknown
ss79275241ILLUMINA|HumanHap300v2.0_rs7930940fwd/TA/Gatcccagggttcctttataacagttaaacaggtgccacagaaacatacattaaatttatc04/18/0711/18/07130Genomicunknown
ss82050505HGSV|Cor18555_SNV_20070510.chr11_60282362fwd/TA/Gatcccagggttcctttataacagttaaacaggtgccacagaaacatacattaaatttatc11/27/0712/02/07130Genomicunknown
ss82623406HGSV|Cor19240_SNV_20070510.chr11_60282362fwd/TA/Gatcccagggttcctttataacagttaaacaggtgccacagaaacatacattaaatttatc11/30/0712/03/07130Genomicunknown
ss84735157HGSV|Cor19129_SNV_20070510.chr11_60282362fwd/TA/Gatcccagggttcctttataacagttaaacaggtgccacagaaacatacattaaatttatc12/06/0712/07/07130Genomicunknown
ss84753023KRIBB_YJKIM|KHS799517fwd/TA/Gatcccagggttcctttataacagttaaacaggtgccacagaaacatacattaaatttatc12/04/0712/07/07130Genomicunknown
ss84860841HGSV|Cor18517_SNV_20070510.chr11_60282362fwd/TA/Gatcccagggttcctttataacagttaaacaggtgccacagaaacatacattaaatttatc12/06/0712/08/07130Genomicunknown
ss88610750BCMHGSC_JDW|JWB-0431443fwd/TA/Gatcccagggttcctttataacagttaaacaggtgccacagaaacatacattaaatttatc02/26/0802/27/08129Genomicunknown
ss97390477HUMANGENOME_JCVI|1103649701027fwd/TA/Gatcccagggttcctttataacagttaaacaggtgccacagaaacatacattaaatttatc03/29/0803/29/08130Genomicunknown
ss102970294BGI|BGI_rs7930940fwd/TA/Gatcccagggttcctttataacagttaaacaggtgccacagaaacatacattaaatttatc06/05/0810/20/09131Genomicunknown
ss1105479081000GENOMES|CEU.trio.12.15.2008_2556282_chr11_60282362fwd/TA/Gatcccagggttcctttataacagttaaacaggtgccacagaaacatacattaaatttatc12/17/0812/17/08130Genomicunknown
ss119859626ILLUMINA-UK|NA18507_000079934_NCBI36.1_chr11_60282362fwd/TA/Gatcccagggttcctttataacagttaaacaggtgccacagaaacatacattaaatttatc01/21/0902/05/09131Genomic99 %
ss122865581ILLUMINA|HumanCNV370v1_C_rs7930940fwd/TA/Gatcccagggttcctttataacagttaaacaggtgccacagaaacatacattaaatttatc04/14/0904/15/09131Genomicunknown
ss132589417ENSEMBL|ENSSNP10443555fwd/TA/Gatcccagggttcctttataacagttaaacaggtgccacagaaacatacattaaatttatc05/11/0905/14/09131Genomicunknown
ss137683071ENSEMBL|ENSSNP598609fwd/TA/Gatcccagggttcctttataacagttaaacaggtgccacagaaacatacattaaatttatc12/08/0810/15/09131Genomicunknown
ss154457198ILLUMINA|Human610_Quadv1_B_rs7930940-127_B_R_1501870182rev/BC/Tgataaatttaatgtatgtttctgtggcacctgtttaactgttataaaggaaccctgggat06/18/0906/20/09131Genomicunknown
ss159631827ILLUMINA|Human660W-Quad_v1_A_rs7930940-128_B_R_1501870182rev/BC/Tgataaatttaatgtatgtttctgtggcacctgtttaactgttataaaggaaccctgggat07/06/0907/07/09131Genomicunknown
ss160930320ILLUMINA|HumanOmni1-Quad_v1-0_B_rs7930940-128_B_R_1512241167rev/BC/Tgataaatttaatgtatgtttctgtggcacctgtttaactgttataaaggaaccctgggat08/04/0910/05/09131Genomicunknown
ss168454558COMPLETE_GENOMICS|NA07022_36_chr11_60282362fwd/TA/Gatcccagggttcctttataacagttaaacaggtgccacagaaacatacattaaatttatc09/30/0910/01/09132Genomicunknown
ss170038035COMPLETE_GENOMICS|NA19240_36_chr11_60282362fwd/TA/Gatcccagggttcctttataacagttaaacaggtgccacagaaacatacattaaatttatc10/01/0910/01/09132Genomicunknown
ss172370756ILLUMINA|HumanCNV370-Quadv3_C_rs7930940-127_B_R_1501870182rev/BC/Tgataaatttaatgtatgtttctgtggcacctgtttaactgttataaaggaaccctgggat10/01/0910/04/09132Genomicunknown
ss174624670ILLUMINA|Human1M-Duov3_B_rs7930940-127_B_R_1501870182rev/BC/Tgataaatttaatgtatgtttctgtggcacctgtttaactgttataaaggaaccctgggat10/01/0910/04/09132Genomicunknown
ss175154761COMPLETE_GENOMICS|NA20431_36_chr11_60282362fwd/TA/Gatcccagggttcctttataacagttaaacaggtgccacagaaacatacattaaatttatc10/01/0910/05/09132Genomicunknown
ss202777544BUSHMAN|BUSHMAN-chr11-60282361fwd/TA/Gatcccagggttcctttataacagttaaacaggtgccacagaaacatacattaaatttatc02/16/1003/08/10132Genomicunknown
ss207859619BCM-HGSC-SUB|BCM_CMT_1011-2243823fwd/TA/Gatcccagggttcctttataacagttaaacaggtgccacagaaacatacattaaatttatc03/15/1003/19/10132Genomicunknown
ss2252714871000GENOMES|pilot_1_YRI_7081170_chr11_60282362fwd/A/Gatcccagggttcctttataacagttaaacaggtgccacagaaacatacattaaatttatc04/22/1004/22/10132Genomicunknown
ss2355827541000GENOMES|pilot_1_CEU_5187383_chr11_60282362fwd/A/Gatcccagggttcctttataacagttaaacaggtgccacagaaacatacattaaatttatc05/01/1005/01/10132Genomicunknown
ss2422098891000GENOMES|pilot_1_CHB+JPT_4094966_chr11_60282362fwd/A/Gatcccagggttcctttataacagttaaacaggtgccacagaaacatacattaaatttatc05/01/1005/01/10132Genomicunknown
ss255210363BL|SNP81353_11_60282362fwd/TA/Gatcccagggttcctttataacagttaaacaggtgccacagaaacatacattaaatttatc08/19/1008/20/10134Genomicunknown
ss281032676GMI|GMI_AK_SNP_5353065fwd/A/Gatcccagggttcctttataacagttaaacaggtgccacagaaacatacattaaatttatc12/16/1012/16/10137Genomicunknown
ss286392774GMI|GMI_NA10851_SNP_2405563fwd/A/Gatcccagggttcctttataacagttaaacaggtgccacagaaacatacattaaatttatc12/17/1012/17/10138Genomicunknown
ss291056932PJP|SNP_563290_chr11_60282362fwd/A/Gatcccagggttcctttataacagttaaacaggtgccacagaaacatacattaaatttatc01/21/1101/21/11134Genomicunknown
ss481753772ILLUMINA|HumanOmniExpress-12v1_C_rs7930940-131_B_R_1858606940fwd/TA/Gagggttcctttataacagttaaacaggtgccacagaaacatacattaaat01/30/1210/27/16137Genomicunknown
ss482719637ILLUMINA|HumanOmni1-Quad_v1-0_C_rs7930940-131_B_R_1858606940fwd/TA/Gagggttcctttataacagttaaacaggtgccacagaaacatacattaaat01/30/1208/28/15146Genomicunknown
ss491451988EXOME_CHIP|.GWAS._168214_chr_11_60525786fwd/TA/Gatcccagggttcctttataacagttaaacaggtgccacagaaacatacattaaatttatc03/05/1203/05/12137Genomicunknown
ss537532586ILLUMINA|HumanOmni5-4v1_B_rs7930940-131_B_R_1885471241fwd/TA/Gagggttcctttataacagttaaacaggtgccacagaaacatacattaaat06/22/1208/29/15146Genomicunknown
ss562594413TISHKOFF|snp_chr11_60525786fwd/TA/Gagggttcctttataacagttaaacaggtgccacagaaacatacattaaat11/22/1211/23/12138Genomicunknown
ss658104432SSMP|11_60525786fwd/TA/Gagggttcctttataacagttaaacaggtgccacagaaacatacattaaat12/14/1202/12/15138Genomicunknown
ss780686897ILLUMINA|HumanOmni25Exome-8v1_A_exm-rs7930940-131_B_R_1990485453fwd/TA/Gagggttcctttataacagttaaacaggtgccacagaaacatacattaaat05/30/1307/10/15146Genomicunknown
ss783360437ILLUMINA|HumanOmniExpressExome-8v1_A_exm-rs7930940-131_B_R_1990485453fwd/TA/Gagggttcctttataacagttaaacaggtgccacagaaacatacattaaat05/31/1306/18/15146Genomicunknown
ss825605759ILLUMINA|HumanCNV370v1_C_rs7930940-126_B_R_IFB1135396792:0fwd/TA/Gagggttcctttataacagttaaacaggtgccacagaaacatacattaaat06/24/1311/21/14144Genomicunknown
ss832534570ILLUMINA|HumanOmniExpress-12v1_H_rs7930940-131_B_R_1858606940fwd/TA/Gagggttcctttataacagttaaacaggtgccacagaaacatacattaaat09/17/1306/18/15146Genomicunknown
ss988580663EVA-GONL|EVA-GONL_rs7930940fwd/TA/Gagggttcctttataacagttaaacaggtgccacagaaacatacattaaat04/23/1404/25/14142Genomicunknown
ss1077773183JMKIDD_LAB|HGDP_WGS_chr11_60525786fwd/TA/Gagggttcctttataacagttaaacaggtgccacagaaacatacattaaat07/10/1407/12/14142Genomicunknown
ss13414964021000GENOMES|PHASE3_V1_54313662fwd/A/Gagggttcctttataacagttaaacaggtgccacagaaacatacattaaat08/16/1408/16/14142Genomicunknown
ss1426650677DDI|DDI_rs7930940fwd/TA/Gagggttcctttataacagttaaacaggtgccacagaaacatacattaaat11/04/1411/04/14144Genomicunknown
ss1575745189EVA_GENOME_DK|EVA_GENOME_DK_snv_rs7930940fwd/TA/Gagggttcctttataacagttaaacaggtgccacagaaacatacattaaat02/19/1502/19/15144Genomicunknown
ss1598243270EVA_DECODE|EVA_DECODE_11_60282362_453059_rs7930940fwd/TA/Gagggttcctttataacagttaaacaggtgccacagaaacatacattaaat03/02/1503/04/15144Genomicunknown
ss1626706579EVA_UK10K_ALSPAC|EVA_UK10K_ALSPAC_11_60525786_30001988fwd/A/Gagggttcctttataacagttaaacaggtgccacagaaacatacattaaat03/04/1503/04/15144Genomicunknown
ss1669700612EVA_UK10K_TWINSUK|EVA_UK10K_TWINSUK_11_60525786_30001988fwd/A/Gagggttcctttataacagttaaacaggtgccacagaaacatacattaaat03/04/1503/04/15144Genomicunknown
ss1713258224EVA_SVP|EVA_SVP_952591fwd/TA/Gagggttcctttataacagttaaacaggtgccacagaaacatacattaaat03/12/1503/12/15144Genomicunknown
ss1752024012ILLUMINA|OmniExpressExome-8v1-1_B_exm-rs7930940-131_B_R_1990485453fwd/TA/Gagggttcctttataacagttaaacaggtgccacagaaacatacattaaat05/27/1506/09/15146Genomicunknown
ss1752024013ILLUMINA|OmniExpressExome-8v1-1_B_rs7930940-131_B_R_1885471241fwd/TA/Gagggttcctttataacagttaaacaggtgccacagaaacatacattaaat05/27/1506/09/15146Genomicunknown
ss1806840445HAMMER_LAB|Hsieh_5860194fwd/TA/Gagggttcctttataacagttaaacaggtgccacagaaacatacattaaat07/15/1507/16/15146Genomicunknown
ss1917860535ILLUMINA|HumanExome-12v1-1_B_exm-rs7930940-131_B_R_1990485453fwd/TA/Gagggttcctttataacagttaaacaggtgccacagaaacatacattaaat10/16/1510/16/15147Genomicunknown
ss1931939818WEILL_CORNELL_DGM|SNV:chr11:60525786fwd/TA/Gagggttcctttataacagttaaacaggtgccacagaaacatacattaaat10/16/1510/17/15147Genomicunknown
ss1946311502ILLUMINA|HumanCoreExome-12v1-0_C_exm-rs7930940-131_B_R_1990485453fwd/TA/Gagggttcctttataacagttaaacaggtgccacagaaacatacattaaat10/29/1510/29/15147Genomicunknown
ss1967375788GENOMED|rs7930940fwd/TA/Gagggttcctttataacagttaaacaggtgccacagaaacatacattaaat02/16/1602/16/16147Genomicunknown
ss2026716691JJLAB|SNP7219246fwd/TA/Gagggttcctttataacagttaaacaggtgccacagaaacatacattaaat08/29/1608/30/16149Genomicunknown
ss2155018995USC_VALOUEV|NC_000011.9:g.60525786A>Gfwd/A/Gagggttcctttataacagttaaacaggtgccacagaaacatacattaaat11/17/1611/17/16150Genomicunknown
ss2182784816HUMAN_LONGEVITY|HLI-11-60758313-A-Gfwd/A/Gagggttcctttataacagttaaacaggtgccacagaaacatacattaaat11/18/1611/18/16150Genomicunknown
ss2346221231TOPMED|11_60525786_A/Cfwd/A/Cagggttcctttataacagttaaacaggtgccacagaaacatacattaaat11/19/1611/19/16150Genomicunknown
ss2346221232TOPMED|11_60525786_A/Gfwd/A/Gagggttcctttataacagttaaacaggtgccacagaaacatacattaaat11/19/1611/19/16150Genomicunknown
ss2627831749SYSTEMSBIOZJU|SYSTEMSBIOZJU_SNV4582177fwd/A/Gagggttcctttataacagttaaacaggtgccacagaaacatacattaaat01/06/1701/06/17151Genomicunknown
ss2632839854ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_rs7930940-131_B_R_18854712fwd/A/Gagggttcctttataacagttaaacaggtgccacagaaacatacattaaat02/02/1702/02/17151Genomicunknown
ss2635026026ILLUMINA|Cancer_BeadChip_11459870_A_rs7930940-128_B_R_1780500913fwd/A/Gagggttcctttataacagttaaacaggtgccacagaaacatacattaaat02/02/1702/02/17151Genomicunknown
ss2699308671GRF|rs7930940fwd/A/Gagggttcctttataacagttaaacaggtgccacagaaacatacattaaat02/13/1702/13/17151Genomicunknown
ss2710736475ILLUMINA|Consortium-OncoArray_15047405_A_chr11_60525786_A_G-100_B_R_21967fwd/A/Gagggttcctttataacagttaaacaggtgccacagaaacatacattaaat03/22/1703/22/17151Genomicunknown
ss2900280927GNOMAD|rs7930940fwd/A/Gagggttcctttataacagttaaacaggtgccacagaaacatacattaaat05/22/1705/22/17151Genomicunknown
ss2984943975AFFY|Axiom_PsorMich_Affx-5570715fwd/A/Gagggttcctttataacagttaaacaggtgccacagaaacatacattaaat05/24/1705/24/17151Genomicunknown
ss3008185725SWEGEN|NC_000011.9:g.60525786A>Gfwd/A/Gagggttcctttataacagttaaacaggtgccacagaaacatacattaaat05/30/1705/30/17151Genomicunknown
ss3027157225BIOINF_KMB_FNS_UNIBA|11.60758313A>Gfwd/A/Gagggttcctttataacagttaaacaggtgccacagaaacatacattaaat07/05/1707/05/17151Genomicunknown
ss3146801144TOPMED|TOPMed_freeze_5?chr11:60,758,313-01fwd/A/Cagggttcctttataacagttaaacaggtgccacagaaacatacattaaat09/30/1709/30/17151Genomicunknown
ss3146801145TOPMED|TOPMed_freeze_5?chr11:60,758,313-02fwd/A/Gagggttcctttataacagttaaacaggtgccacagaaacatacattaaat09/30/1709/30/17151Genomicunknown
ss3349627023CSHL|rs7930940fwd/A/Gagggttcctttataacagttaaacaggtgccacagaaacatacattaaat10/02/1710/02/17151Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs7930940|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='A/C/G'|mol=Genomic|build=151
 AGTAGAGGGG TGCCTCCAAG AGGGACTTAG GAAGGGAGAC TCTGAGGCGC TTTTTGGCGC
 ATTCCCTGTT ATTGTTCAAA GCAACAGGAG ATGGCATGAG AGTTTGCCTT TTACTGTCTT
 TAAAGAGTTA AAGAAAAGTA TCCGTGAAAA CAGTGTACAT TCACCGTTTA CGAAGGAGGT
 GATTGAGGCT CTGGGAAATG GCTATAAGAT GACTCCACAT GATTGGAAAA CTTTGGTAAA
 TGTTTTGGTT TCAGCTGCAG AATATACTGT GTGGTGGAGT GAGTACAGTG ATTTAGCCAT
 GCAGCAGTCC TTGCAAAATT TGGATAATAA TATCCCGATA CAACTTGATA TGCTATTGGG
 AACAGGGCCT TTTGCTTCAG CTCAGACTCA GGGTCAAGCA GGTGGCCATC TATTTCCTCA
 ATGCTCACAG CTAGCAATAC AAACATAAAA AAAAAAAATC CCGTAAGACA ATCCCAGGGT
 TCCTTTATAA CAGTTAAACA
 V
 GGTGCCACAG AAACATACAT TAAATTTATC AACCGACTGC AAGCTGCAAT TGAAAAACAG
 GTATCCCATC CTAAGGCTAC CAAACTTCTT ATGTTACAAT TGGCTTTTGA AAAAGCAAAT
 AAGGATTGTC AGACAGCAAT AACTCCAGTC TAAGCCACTG CCACTGAAAT CAGTGTGTTT
 ATTAAAGCAT GCCAAAATAT AGGCACTACA ACTCATCTGA CTCAAACTTT TGCTGCAATA
 ATGACCGGAA CCACATATTG TAATTGTGAC CTAACCAGGC ATATGGCAAA AATAACCCTG
 CTACTGTTTT CCTACCTTTA AGCAAAAAAC AATTTCATAC TCTTCTAGCT TGTGCTCTTG
 ATTGGCAAAT CGCAATAGCT GACTTTATTG GTAATATCAG CTTTCATTTA CCAGCCTCTA
 AGCTCCTGAA CTTTTTACAA ACTGTGCCTG TTAAATTTGT ATCTATTGTT GTTTCTGAGC
 CCTTGCTTCA TGCCACTACT

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_033903 ABBA01021514
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) . See additional population frequency from 1000Genome [here] back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceA/A
A/G
G/G
HWPA
G
ss119859626YRI 2IG 1.00000000 0.500000000.50000000
ss132589417ENSEMBL_Watson 2IG 1.00000000 1.00000000
ss1341496402EAS 1008AF 0.256900010.74309999
EUR 1006AF 0.349899980.65009999
AFR 1322AF 0.243600010.75639999
AMR 694AF 0.265100000.73490000
SAS 978AF 0.150300000.84969997
ss137683071ENSEMBL_Venter 2IG 1.00000000 1.00000000
ENSEMBL_celera 4IG 1.00000000 1.00000000
ss168454558CEUEuropean 2IG 1.00000000 0.500000000.50000000
ss170038035YRISub-Saharan African 2IG 1.00000000 1.00000000
ss175154761PGP 2IG 1.00000000 1.00000000
ss225271487pilot_1_YRI_low_coverage_panel 118AF 0.220338990.77966100
ss235582754pilot_1_CEU_low_coverage_panel 120AF 0.416666660.58333331
ss242209889pilot_1_CHB+JPT_low_coverage_panel 120AF 0.208333330.79166669
ss40074879HapMap-CEUEuropean 224IG0.250000000.401785700.348214300.050043000.450892870.54910713
HapMap-HCBAsian 86IG 0.395348850.604651150.342782000.197674420.80232561
HapMap-JPTAsian 170IG0.070588240.258823540.670588250.099721000.200000000.80000001
HapMap-YRISub-Saharan African 224IG0.017857140.312500000.669642870.371093000.174107150.82589287
HAPMAP-ASW 98IG0.020408160.469387770.510204080.150222000.255102040.74489796
HAPMAP-CHBAsian 82IG0.024390240.439024390.536585390.250592000.243902440.75609756
HAPMAP-CHD 170IG0.047058820.411764710.541176500.438578000.252941190.74705881
HAPMAP-GIH 172IG0.011627910.220930230.767441871.000000000.122093020.87790698
HAPMAP-LWK 180IG0.055555560.311111120.633333330.583882000.211111110.78888887
HAPMAP-MEX 100IG0.100000000.360000010.540000020.479500000.280000000.72000003
HAPMAP-MKK 286IG0.055944060.412587400.531468510.438578000.262237760.73776221
HAPMAP-TSI 174IG0.091954020.540229860.367816090.150222000.362068950.63793105
ss69318587HapMap-CEUEuropean 120IG0.183333340.466666670.349999991.000000000.416666660.58333331
HapMap-HCBAsian 90IG 0.377777790.622222240.371093000.188888890.81111109
HapMap-JPTAsian 90IG0.088888890.311111120.600000020.294266000.244444440.75555557
HapMap-YRISub-Saharan African 120IG0.016666670.266666680.716666640.751830000.150000010.85000002
ss97390477J. Craig Venter 2IG 1.00000000 1.00000000

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
0.377+/-0.2150000

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqwith2hitwithHapMapFreqWith1000GenomeData
DoubleHit found by:  BCM_SSAHASNP
UNKNOWNUNKNOWNUNKNOWN

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