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Reference SNP (refSNP) Cluster Report: rs7907713                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:116/151
Map to Genome Build:108/Weight 1
Validation Status:byClusterbyFreqwith2hitwithHapMapFreqWith1000GenomeData
Citation:PubMedLitVarNEW
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:A/G (FWD)
Allele Origin:
Ancestral Allele:G
Variation Viewer:link to VariationViewer
Clinical Significance:NA
MAF/MinorAlleleCount:A=0.1797/900 (1000 Genomes)
A=0.2255/28320 (TOPMED)
HGVS Names
  • CM000672.2:g.107169575G>A
  • NC_000010.10:g.108929333G>A
  • NC_000010.11:g.107169575G>A
  • NG_029120.1:g.134C>T
Links , Linkout
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss280761861 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs7907713 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss12086456WI_SSAHASNP|chr10.NT_030059.10_27367891fwd/TA/Ggaaagttaattctaccttggacacccgttgagataacaaaactatcttggatttgtgtac07/04/0310/10/03116Genomicunknown
ss14907019PERLEGEN|PS02299318byFreqfwd/TA/Ggaaagttaattctaccttggacacccgttgagataacaaaactatcttggatttgtgtac11/13/0304/07/04119Genomicunknown
ss16496380CSHL-HAPMAP|CSHL-HuAA-200402.chr10.NT_030059.11_27677859fwd/TA/Ggaaagttaattctaccttggacacccgttgagataacaaaactatcttggatttgtgtac02/17/0403/04/04120Genomicunknown
ss38583731ABI|hCV1778241byFreqfwd/TA/Ggaaagttaattctaccttggacacccgttgagataacaaaactatcttggatttgtgtac07/15/0511/02/06126Genomicunknown
ss65985733AFFY|SNP_A-1694318fwd/TA/Gttaattctaccttggacacccgttgagataacaaaactatcttggatttg10/26/0610/26/06127Genomicunknown
ss66660485ILLUMINA|HumanHap300v1.1_rs7907713fwd/BA/Ggaaagttaattctaccttggacacccgttgagataacaaaactatcttggatttgtgtac11/09/0611/09/06127Genomicunknown
ss67846310ILLUMINA|HumanHap550v1.1_rs7907713fwd/TA/Ggaaagttaattctaccttggacacccgttgagataacaaaactatcttggatttgtgtac11/14/0611/14/06127Genomicunknown
ss68000883ILLUMINA|HumanHap650Yv1.0_rs7907713fwd/TA/Ggaaagttaattctaccttggacacccgttgagataacaaaactatcttggatttgtgtac11/14/0611/15/06127Genomicunknown
ss70957689ILLUMINA|HumanHap550v3.0__rs7907713fwd/TA/Ggaaagttaattctaccttggacacccgttgagataacaaaactatcttggatttgtgtac04/20/0703/31/08130Genomicunknown
ss71565441ILLUMINA|HumanHap650Yv3.0_rs7907713fwd/TA/Ggaaagttaattctaccttggacacccgttgagataacaaaactatcttggatttgtgtac04/23/0704/23/07127Genomicunknown
ss75531479ILLUMINA|ILMN_Human_1M_rs7907713fwd/TA/Ggaaagttaattctaccttggacacccgttgagataacaaaactatcttggatttgtgtac08/28/0708/29/07129Genomicunknown
ss79274380ILLUMINA|HumanHap300v2.0_rs7907713fwd/TA/Ggaaagttaattctaccttggacacccgttgagataacaaaactatcttggatttgtgtac04/18/0711/18/07130Genomicunknown
ss84748506KRIBB_YJKIM|KHS798115fwd/TA/Ggaaagttaattctaccttggacacccgttgagataacaaaactatcttggatttgtgtac12/04/0712/07/07130Genomicunknown
ss97682003HUMANGENOME_JCVI|1103694048400fwd/TA/Ggaaagttaattctaccttggacacccgttgagataacaaaactatcttggatttgtgtac03/29/0803/30/08130Genomicunknown
ss1097283311000GENOMES|CEU.trio.12.15.2008_2424095_chr10_108919323fwd/TA/Ggaaagttaattctaccttggacacccgttgagataacaaaactatcttggatttgtgtac12/16/0812/16/08130Genomicunknown
ss1137774361000GENOMES|NA19240_2008_12_16_2188865_chr10_108919323fwd/TA/Ggaaagttaattctaccttggacacccgttgagataacaaaactatcttggatttgtgtac12/18/0812/18/08130Genomicunknown
ss122860441ILLUMINA|HumanCNV370v1_C_rs7907713fwd/TA/Ggaaagttaattctaccttggacacccgttgagataacaaaactatcttggatttgtgtac04/14/0904/15/09131Genomicunknown
ss131837431ENSEMBL|ENSSNP306744byFreqfwd/TA/Ggaaagttaattctaccttggacacccgttgagataacaaaactatcttggatttgtgtac12/08/0803/07/10131Genomicunknown
ss154455573ILLUMINA|Human610_Quadv1_B_rs7907713-128_T_F_1501869634fwd/TA/Ggaaagttaattctaccttggacacccgttgagataacaaaactatcttggatttgtgtac06/18/0906/20/09131Genomicunknown
ss159630223ILLUMINA|Human660W-Quad_v1_A_rs7907713-128_T_F_1501869634fwd/TA/Ggaaagttaattctaccttggacacccgttgagataacaaaactatcttggatttgtgtac07/06/0907/07/09131Genomicunknown
ss171017126COMPLETE_GENOMICS|NA19240_36_chr10_108919323fwd/TA/Ggaaagttaattctaccttggacacccgttgagataacaaaactatcttggatttgtgtac10/01/0910/04/09132Genomicunknown
ss172367022ILLUMINA|HumanCNV370-Quadv3_C_rs7907713-128_T_F_1501869634fwd/TA/Ggaaagttaattctaccttggacacccgttgagataacaaaactatcttggatttgtgtac10/01/0910/04/09132Genomicunknown
ss174612377ILLUMINA|Human1M-Duov3_B_rs7907713-128_T_F_1501869634fwd/TA/Ggaaagttaattctaccttggacacccgttgagataacaaaactatcttggatttgtgtac10/01/0910/04/09132Genomicunknown
ss201983856BUSHMAN|BUSHMAN-chr10-108919322byFreqfwd/TA/Ggaaagttaattctaccttggacacccgttgagataacaaaactatcttggatttgtgtac02/16/1009/05/14132Genomicunknown
ss2249249401000GENOMES|pilot_1_YRI_6734623_chr10_108919323fwd/A/Ggaaagttaattctaccttggacacccgttgagataacaaaactatcttggatttgtgtac04/22/1004/22/10132Genomicunknown
ss2353229161000GENOMES|pilot_1_CEU_4927545_chr10_108919323fwd/A/Ggaaagttaattctaccttggacacccgttgagataacaaaactatcttggatttgtgtac05/01/1005/01/10132Genomicunknown
ss2419999831000GENOMES|pilot_1_CHB+JPT_3885060_chr10_108919323fwd/A/Ggaaagttaattctaccttggacacccgttgagataacaaaactatcttggatttgtgtac05/01/1005/01/10132Genomicunknown
ss280761861GMI|GMI_AK_SNP_5082196fwd/A/Ggaaagttaattctaccttggacacccgttgagataacaaaactatcttggatttgtgtac12/16/1012/16/10137Genomicunknown
ss286258273GMI|GMI_NA10851_SNP_2271058fwd/A/Ggaaagttaattctaccttggacacccgttgagataacaaaactatcttggatttgtgtac12/17/1012/17/10138Genomicunknown
ss290925934PJP|SNP_432292_chr10_108919323fwd/A/Ggaaagttaattctaccttggacacccgttgagataacaaaactatcttggatttgtgtac01/21/1101/21/11134Genomicunknown
ss481713970ILLUMINA|HumanOmni2.5-4v1_B_rs7907713-128_T_F_1767543220fwd/TA/Gttaattctaccttggacacccgttgagataacaaaactatcttggatttg01/30/1210/28/16137Genomicunknown
ss481745248ILLUMINA|HumanOmniExpress-12v1_C_rs7907713-131_T_F_1857422575fwd/TA/Gttaattctaccttggacacccgttgagataacaaaactatcttggatttg01/30/1210/27/16137Genomicunknown
ss485651694ILLUMINA|HumanOmni2.5-4v1_D_rs7907713-131_T_F_1857422575fwd/TA/Gttaattctaccttggacacccgttgagataacaaaactatcttggatttg01/30/1210/27/16137Genomicunknown
ss537529448ILLUMINA|HumanOmni5-4v1_B_rs7907713-131_T_F_1891316069fwd/TA/Gttaattctaccttggacacccgttgagataacaaaactatcttggatttg06/22/1208/29/15146Genomicunknown
ss562191124TISHKOFF|snp_chr10_108929333fwd/TA/Gttaattctaccttggacacccgttgagataacaaaactatcttggatttg11/22/1211/23/12138Genomicunknown
ss657305521SSMP|10_108929333fwd/TA/Gttaattctaccttggacacccgttgagataacaaaactatcttggatttg12/14/1202/12/15138Genomicunknown
ss778619265ILLUMINA|HumanOmni25Exome-8v1_A_rs7907713-131_T_F_1865382859fwd/TA/Gttaattctaccttggacacccgttgagataacaaaactatcttggatttg05/30/1307/10/15146Genomicunknown
ss783271414ILLUMINA|HumanOmni2.5-4v1_H_rs7907713-131_T_F_1857422575fwd/TA/Gttaattctaccttggacacccgttgagataacaaaactatcttggatttg05/30/1307/29/15146Genomicunknown
ss784224614ILLUMINA|HumanOmniExpressExome-8v1_A_rs7907713-131_T_F_1891316069fwd/TA/Gttaattctaccttggacacccgttgagataacaaaactatcttggatttg05/31/1306/18/15146Genomicunknown
ss825604898ILLUMINA|HumanCNV370v1_C_rs7907713-126_T_F_IFB1135568064:0fwd/TA/Gttaattctaccttggacacccgttgagataacaaaactatcttggatttg06/24/1311/21/14144Genomicunknown
ss832532450ILLUMINA|HumanOmniExpress-12v1_H_rs7907713-131_T_F_1857422575fwd/TA/Gttaattctaccttggacacccgttgagataacaaaactatcttggatttg09/17/1306/18/15146Genomicunknown
ss834076753ILLUMINA|HumanOmni2.5-8v1_A_rs7907713-131_T_F_1865382859fwd/TA/Gttaattctaccttggacacccgttgagataacaaaactatcttggatttg09/18/1307/29/15146Genomicunknown
ss987892568EVA-GONL|EVA-GONL_rs7907713fwd/TA/Gttaattctaccttggacacccgttgagataacaaaactatcttggatttg04/23/1404/25/14142Genomicunknown
ss1077275062JMKIDD_LAB|HGDP_WGS_chr10_108929333fwd/TA/Gttaattctaccttggacacccgttgagataacaaaactatcttggatttg07/10/1407/11/14142Genomicunknown
ss13389552231000GENOMES|PHASE3_V1_51671415fwd/A/Gttaattctaccttggacacccgttgagataacaaaactatcttggatttg08/16/1408/16/14142Genomicunknown
ss1426435520DDI|DDI_rs7907713fwd/TA/Gttaattctaccttggacacccgttgagataacaaaactatcttggatttg11/04/1411/04/14144Genomicunknown
ss1575339110EVA_GENOME_DK|EVA_GENOME_DK_snv_rs7907713fwd/TA/Gttaattctaccttggacacccgttgagataacaaaactatcttggatttg02/19/1502/19/15144Genomicunknown
ss1597568600EVA_DECODE|EVA_DECODE_10_108919323_824590_rs7907713fwd/TA/Gttaattctaccttggacacccgttgagataacaaaactatcttggatttg03/02/1503/04/15144Genomicunknown
ss1625376733EVA_UK10K_ALSPAC|EVA_UK10K_ALSPAC_10_108929333_28544838fwd/A/Gttaattctaccttggacacccgttgagataacaaaactatcttggatttg03/04/1503/04/15144Genomicunknown
ss1668370766EVA_UK10K_TWINSUK|EVA_UK10K_TWINSUK_10_108929333_28544838fwd/A/Gttaattctaccttggacacccgttgagataacaaaactatcttggatttg03/04/1503/04/15144Genomicunknown
ss1713209191EVA_SVP|EVA_SVP_903558fwd/TA/Gttaattctaccttggacacccgttgagataacaaaactatcttggatttg03/12/1503/12/15144Genomicunknown
ss1751945709ILLUMINA|OmniExpressExome-8v1-1_B_rs7907713-131_T_F_1891316069fwd/TA/Gttaattctaccttggacacccgttgagataacaaaactatcttggatttg05/27/1506/09/15146Genomicunknown
ss1806556799HAMMER_LAB|Hsieh_5575471fwd/TA/Gttaattctaccttggacacccgttgagataacaaaactatcttggatttg07/15/1507/16/15146Genomicunknown
ss1931253700WEILL_CORNELL_DGM|SNV:chr10:108929333fwd/TA/Gttaattctaccttggacacccgttgagataacaaaactatcttggatttg10/16/1510/17/15147Genomicunknown
ss1946292824ILLUMINA|HumanCoreExome-12v1-0_C_rs7907713-131_T_F_1891316069fwd/TA/Gttaattctaccttggacacccgttgagataacaaaactatcttggatttg10/29/1510/29/15147Genomicunknown
ss1959292901ILLUMINA|rs7907713-131_T_F_1891316069fwd/TA/Gttaattctaccttggacacccgttgagataacaaaactatcttggatttg11/13/1511/13/15147Genomicunknown
ss1967217506GENOMED|rs7907713fwd/TA/Gttaattctaccttggacacccgttgagataacaaaactatcttggatttg02/16/1602/16/16147Genomicunknown
ss2026358545JJLAB|SNP6861100fwd/TA/Gttaattctaccttggacacccgttgagataacaaaactatcttggatttg08/29/1608/30/16149Genomicunknown
ss2154637607USC_VALOUEV|NC_000010.10:g.108929333G>Afwd/A/Gttaattctaccttggacacccgttgagataacaaaactatcttggatttg11/17/1611/17/16151Genomicunknown
ss2177851015HUMAN_LONGEVITY|HLI-10-107169575-G-Afwd/A/Gttaattctaccttggacacccgttgagataacaaaactatcttggatttg11/18/1611/18/16150Genomicunknown
ss2340975848TOPMED|10_108929333_G/Afwd/A/Gttaattctaccttggacacccgttgagataacaaaactatcttggatttg11/19/1611/19/16150Genomicunknown
ss2632758809ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_rs7907713-131_T_F_18913160fwd/A/Gttaattctaccttggacacccgttgagataacaaaactatcttggatttg02/02/1702/02/17151Genomicunknown
ss2698892050GRF|rs7907713fwd/A/Gttaattctaccttggacacccgttgagataacaaaactatcttggatttg02/13/1702/13/17151Genomicunknown
ss2710719578ILLUMINA|Consortium-OncoArray_15047405_A_rs7907713-131_T_F_1891316069fwd/A/Gttaattctaccttggacacccgttgagataacaaaactatcttggatttg03/22/1703/22/17151Genomicunknown
ss2893097199GNOMAD|rs7907713fwd/A/Gttaattctaccttggacacccgttgagataacaaaactatcttggatttg05/19/1705/19/17151Genomicunknown
ss3007105888SWEGEN|NC_000010.10:g.108929333G>Afwd/A/Gttaattctaccttggacacccgttgagataacaaaactatcttggatttg05/30/1705/30/17151Genomicunknown
ss3021273316ILLUMINA|MEGA_Consortium_v2_15070954_A2_rs7907713-138_T_F_2276724235fwd/A/Gttaattctaccttggacacccgttgagataacaaaactatcttggatttg06/28/1706/28/17151Genomicunknown
ss3026968650BIOINF_KMB_FNS_UNIBA|10.107169575G>Afwd/A/Gttaattctaccttggacacccgttgagataacaaaactatcttggatttg07/05/1707/05/17151Genomicunknown
ss3129758638TOPMED|TOPMed_freeze_5?chr10:107,169,575fwd/A/Gttaattctaccttggacacccgttgagataacaaaactatcttggatttg09/29/1709/29/17151Genomicunknown
ss3349298594CSHL|rs7907713fwd/A/Gttaattctaccttggacacccgttgagataacaaaactatcttggatttg10/02/1710/02/17151Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs7907713|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='A/G'|mol=Genomic|build=151
 AGCATAAGCT ACAGGTTAAC TGTCTCATTG GTTTTTTGTC TTCCCTTTTT CCTAAGTCTC
 TTGATTTTTG ATGGCTACTT TGGCTTCAGT TTGCACTAAA TCACATTTAT ATGCCTCATC
 GTTTGAACAA TGTCTTTTAA TAGTTCTCAA AATATTTGGC TCCCCTTGGA TACCATTGAG
 ACAAAGTGTC TTGTCTTGCA TTTCAGATCA ATTTCATGAA GAACCACAGA AAGAAAACTG
 GGGAGAATAA TATGCAGGCT ATTCTCATTG CCTGCCAACA GAATGATGGG ATTTTTAAAA
 TCTGTCCCTT AAAATACTTT CAGGTATCAA CAAATACAGA CCTAGCTCTG AATCCAGTAA
 TTGTACCCGT TCTCATACAC CCAATCTAAG TGGTGTTAGT AGGAGCACAT AAGCCCTCTT
 ATCTTTAAAA ACAGGGCTAA GATTATCTAC CTAACTCATA AGGATGTTAT GAAAGTTAAT
 TCTACCTTGG ACACCCGTTG
 R
 AGATAACAAA ACTATCTTGG ATTTGTGTAC CCTCTGTCTC ATCACACCTC TAAACAGTTT
 TTGTTTTGCA TTTTTCCCCC TAGTTTAATA AATCTTGCAG CAGCTCCAAA AGATAGGTAG
 GGGGCAGTTT TTGCCTGTAT CTTACAGAAT ACAAATAAAT TTATCTAAGG TCACAGACTC
 AAAGACAAGA CTTAGAGCAG ATTGTCTTTT TATCCTTTTC CCCCCTGTTT TGTCCAATTC
 TGTTCCCAAT TTGTATATTC ATGAATTAAA ATTCCACATT ATTTTTGTGT AGCTATTATG
 CAGTGCTTAT ACAATCATTT CAGGTTTCAA AGGATAGTTT GCATAATTAA GTAGGAAAAG
 AGAAGCATGA AATAATATCA CTGTCATTAT GTAAACTCAC ATATGCATAT ATATTTTTCC
 AATTTTAATA TTCATACTTA AAGTGAAATA GATAAAAATA TACTATGATT AAATAAGTTT
 ATTTAAAGAT TGTATTATTA

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_030059 ABBA01063060
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) . See additional population frequency from 1000Genome [here] back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceA/A
A/G
G/G
HWPA
G
ss131837431ENSEMBL_Venter 2IG 1.00000000 0.500000000.50000000
ENSEMBL_celera 6IG0.33333334 0.66666669 0.333333340.66666669
ss1338955223EAS 1008AF 0.095200000.90480000
EUR 1006AF 0.198800000.80119997
AFR 1322AF 0.260199990.73980004
AMR 694AF 0.178700000.82129997
SAS 978AF 0.139100000.86089998
ss14907019AfAmAfrican American 12IG0.333333340.500000000.16666667 0.583333310.41666666
CaucasianEuropean 20IG 0.200000000.800000011.000000000.100000000.89999998
AsianAsian 12IG 0.166666670.83333331 0.083333340.91666669
CEPHEuropean 10IG 1.00000000 1.00000000
PDpanelGlobal 46IG 0.217391300.782608691.000000000.108695650.89130437
ss171017126YRISub-Saharan African 2IG 1.00000000 0.500000000.50000000
ss201983856BUSHMAN_POP2 2IG 1.00000000 0.500000000.50000000
BANTU 2IG 1.00000000 0.500000000.50000000
ss224924940pilot_1_YRI_low_coverage_panel 118AF 0.245762710.75423729
ss235322916pilot_1_CEU_low_coverage_panel 120AF 0.150000010.85000002
ss241999983pilot_1_CHB+JPT_low_coverage_panel 120AF 0.150000010.85000002
ss38583731HapMap-CEUEuropean 222IG0.027027030.288288300.684684691.000000000.171171170.82882881
HapMap-HCBAsian 84IG0.047619050.285714300.666666690.654721000.190476190.80952382
HapMap-JPTAsian 168IG 0.238095240.761904780.583882000.119047620.88095236
HapMap-YRISub-Saharan African 226IG0.044247790.380530980.575221240.527089000.234513270.76548672
HAPMAP-ASW 98IG0.142857150.428571430.428571430.654721000.357142870.64285713
HAPMAP-CHBAsian 78IG 0.307692320.692307710.583882000.153846160.84615386
HAPMAP-CHD 164IG0.024390240.207317070.768292670.527089000.128048780.87195122
HAPMAP-GIH 176IG0.034090910.215909090.750000000.294266000.142045450.85795456
HAPMAP-LWK 180IG0.088888890.488888890.422222230.371093000.333333340.66666669
HAPMAP-MEX 100IG0.040000000.239999990.720000030.479500000.160000000.83999997
HAPMAP-MKK 286IG0.153846160.419580430.426573430.273322000.363636370.63636363
HAPMAP-TSI 172IG0.034883720.372093020.593023240.479500000.220930230.77906978
ENSEMBL_Watson 2IG 1.00000000 1.00000000
ss97682003J. Craig Venter 2IG 1.00000000 0.500000000.50000000

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
Additional Freq. Data
0.295+/-0.2460000ALFRED: The Allele Frequency Database

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqwith2hitwithHapMapFreqWith1000GenomeData
DoubleHit found by:  BCM_SSAHASNP
UNKNOWNUNKNOWNUNKNOWN

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