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Reference SNP (refSNP) Cluster Report: rs7201268                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:116/151
Map to Genome Build:108/Weight 1
Validation Status:byClusterbyFreqWith1000GenomeData
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:A/G/T (FWD)
Allele Origin:
Ancestral Allele:G
Variation Viewer:link to VariationViewer
Clinical Significance:NA
MAF/MinorAlleleCount:A=0.0200/100 (1000 Genomes)
HGVS Names
  • CM000678.2:g.25401045A>G
  • CM000678.2:g.25401045A>T
  • NC_000016.9:g.25412366A>G
Links , Linkout
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss282480632 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs7201268 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss10835818BCM_SSAHASNP|chr16.NT_010393.13_16685582byFreqfwd/TA/Gaaagctgacaaaccccatagttctcagggagtcttccacccatctacctctctgacttgg06/30/0308/05/04116Genomicunknown
ss21317712SSAHASNP|WGSA-200403-chr16.chr16.NT_010393.14_16724697fwd/TA/Gaaagctgacaaaccccatagttctcagggagtcttccacccatctacctctctgacttgg03/19/0403/19/04121Genomicunknown
ss66722859ILLUMINA|HumanHap300v1.1_rs7201268fwd/TA/Gaaagctgacaaaccccatagttctcagggagtcttccacccatctacctctctgacttgg11/09/0611/09/06127Genomicunknown
ss67555044ILLUMINA|HumanHap550v1.1_rs7201268fwd/TA/Gaaagctgacaaaccccatagttctcagggagtcttccacccatctacctctctgacttgg11/14/0611/14/06127Genomicunknown
ss67930878ILLUMINA|HumanHap650Yv1.0_rs7201268fwd/TA/Gaaagctgacaaaccccatagttctcagggagtcttccacccatctacctctctgacttgg11/14/0611/15/06127Genomicunknown
ss70915695ILLUMINA|HumanHap550v3.0__rs7201268fwd/TA/Gaaagctgacaaaccccatagttctcagggagtcttccacccatctacctctctgacttgg04/20/0703/31/08130Genomicunknown
ss71514352ILLUMINA|HumanHap650Yv3.0_rs7201268fwd/TA/Gaaagctgacaaaccccatagttctcagggagtcttccacccatctacctctctgacttgg04/23/0704/23/07127Genomicunknown
ss75652603ILLUMINA|ILMN_Human_1M_rs7201268fwd/TA/Gaaagctgacaaaccccatagttctcagggagtcttccacccatctacctctctgacttgg08/28/0708/29/07129Genomicunknown
ss76748075AFFY|AFFY_6_1M_SNP_A-8609378fwd/TA/Gccatagttctcagggagtcttccacccatcta08/28/0708/30/07129Genomicunknown
ss79249758ILLUMINA|HumanHap300v2.0_rs7201268fwd/TA/Gaaagctgacaaaccccatagttctcagggagtcttccacccatctacctctctgacttgg04/18/0711/18/07130Genomicunknown
ss82488787HGSV|Cor18956_SNV_20070510.chr16_25319867fwd/TA/Gaaagctgacaaaccccatagttctcagggagtcttccacccatctacctctctgacttgg11/30/0712/02/07130Genomicunknown
ss82693887HGSV|Cor19240_SNV_20070510.chr16_25319867fwd/TA/Gaaagctgacaaaccccatagttctcagggagtcttccacccatctacctctctgacttgg11/30/0712/03/07130Genomicunknown
ss84636228KRIBB_YJKIM|KHS765054fwd/TA/Gaaagctgacaaaccccatagttctcagggagtcttccacccatctacctctctgacttgg12/04/0712/07/07130Genomicunknown
ss90353217BCMHGSC_JDW|JWB-0933247byFreqfwd/TA/Gaaagctgacaaaccccatagttctcagggagtcttccacccatctacctctctgacttgg02/26/0809/05/14129Genomicunknown
ss96631828HUMANGENOME_JCVI|1103645452544fwd/TA/Gaaagctgacaaaccccatagttctcagggagtcttccacccatctacctctctgacttgg03/27/0803/27/08130Genomicunknown
ss106467074BGI|BGI_rs7201268fwd/TA/Gaaagctgacaaaccccatagttctcagggagtcttccacccatctacctctctgacttgg09/15/0806/18/09130Genomicunknown
ss1092731851000GENOMES|CEU.trio.12.15.2008_3276134_chr16_25319867fwd/TA/Gaaagctgacaaaccccatagttctcagggagtcttccacccatctacctctctgacttgg12/16/0812/16/08130Genomicunknown
ss1149844951000GENOMES|NA19240_2008_12_16_2941338_chr16_25319867fwd/TA/Gaaagctgacaaaccccatagttctcagggagtcttccacccatctacctctctgacttgg12/19/0812/19/08130Genomicunknown
ss118225731ILLUMINA-UK|NA18507_000037775_NCBI36.1_chr16_25319867fwd/TA/Gaaagctgacaaaccccatagttctcagggagtcttccacccatctacctctctgacttgg01/20/0901/21/09130Genomic99 %
ss122713392ILLUMINA|HumanCNV370v1_C_rs7201268fwd/TA/Gaaagctgacaaaccccatagttctcagggagtcttccacccatctacctctctgacttgg04/14/0904/15/09131Genomicunknown
ss136641403ENSEMBL|ENSSNP11093996fwd/TA/Gaaagctgacaaaccccatagttctcagggagtcttccacccatctacctctctgacttgg05/11/0905/15/09131Genomicunknown
ss144108149ENSEMBL|ENSSNP5533801fwd/TA/Gaaagctgacaaaccccatagttctcagggagtcttccacccatctacctctctgacttgg12/08/0810/17/09131Genomicunknown
ss154412059ILLUMINA|Human610_Quadv1_B_rs7201268-127_T_F_1501844306fwd/TA/Gaaagctgacaaaccccatagttctcagggagtcttccacccatctacctctctgacttgg06/18/0906/20/09131Genomicunknown
ss157213586GMI|GMI_SNP_102739195fwd/TA/Gaaagctgacaaaccccatagttctcagggagtcttccacccatctacctctctgacttgg06/24/0906/25/09131Genomicunknown
ss159587163ILLUMINA|Human660W-Quad_v1_A_rs7201268-128_T_F_1501844306fwd/TA/Gaaagctgacaaaccccatagttctcagggagtcttccacccatctacctctctgacttgg07/06/0907/07/09131Genomicunknown
ss168050665COMPLETE_GENOMICS|NA07022_36_chr16_25319867fwd/TA/Gaaagctgacaaaccccatagttctcagggagtcttccacccatctacctctctgacttgg09/30/0909/30/09132Genomicunknown
ss169477974COMPLETE_GENOMICS|NA19240_36_chr16_25319867fwd/TA/Gaaagctgacaaaccccatagttctcagggagtcttccacccatctacctctctgacttgg10/01/0910/01/09132Genomicunknown
ss171122161COMPLETE_GENOMICS|NA20431_36_chr16_25319867fwd/TA/Gaaagctgacaaaccccatagttctcagggagtcttccacccatctacctctctgacttgg10/01/0910/01/09132Genomicunknown
ss172260782ILLUMINA|HumanCNV370-Quadv3_C_rs7201268-127_T_F_1501844306fwd/TA/Gaaagctgacaaaccccatagttctcagggagtcttccacccatctacctctctgacttgg10/01/0910/04/09132Genomicunknown
ss174287050ILLUMINA|Human1M-Duov3_B_rs7201268-127_T_F_1501844306fwd/TA/Gaaagctgacaaaccccatagttctcagggagtcttccacccatctacctctctgacttgg10/01/0910/04/09132Genomicunknown
ss201571476BUSHMAN|BUSHMAN-chr16-25319866fwd/TA/Gaaagctgacaaaccccatagttctcagggagtcttccacccatctacctctctgacttgg02/16/1003/07/10132Genomicunknown
ss207466396BCM-HGSC-SUB|BCM_CMT_1011-2788302fwd/TA/Gaaagctgacaaaccccatagttctcagggagtcttccacccatctacctctctgacttgg03/15/1003/18/10132Genomicunknown
ss2271977801000GENOMES|pilot_1_YRI_9007463_chr16_25319867fwd/A/Gaaagctgacaaaccccatagttctcagggagtcttccacccatctacctctctgacttgg04/22/1004/22/10132Genomicunknown
ss2369932251000GENOMES|pilot_1_CEU_6597854_chr16_25319867fwd/A/Gaaagctgacaaaccccatagttctcagggagtcttccacccatctacctctctgacttgg05/01/1005/01/10132Genomicunknown
ss2433395501000GENOMES|pilot_1_CHB+JPT_5224627_chr16_25319867fwd/A/Gaaagctgacaaaccccatagttctcagggagtcttccacccatctacctctctgacttgg05/01/1005/01/10132Genomicunknown
ss255593844BL|SNP34753_16_25319867fwd/TA/Gaaagctgacaaaccccatagttctcagggagtcttccacccatctacctctctgacttgg08/20/1008/20/10134Genomicunknown
ss282480632GMI|GMI_AK_SNP_6801033fwd/A/Gaaagctgacaaaccccatagttctcagggagtcttccacccatctacctctctgacttgg12/16/1012/16/10137Genomicunknown
ss287053264GMI|GMI_NA10851_SNP_3066055fwd/A/Gaaagctgacaaaccccatagttctcagggagtcttccacccatctacctctctgacttgg12/17/1012/17/10138Genomicunknown
ss291938713PJP|SNP_1445071_chr16_25319867fwd/A/Gaaagctgacaaaccccatagttctcagggagtcttccacccatctacctctctgacttgg01/21/1101/21/11134Genomicunknown
ss480352253ILLUMINA|HumanOmni2.5-4v1_D_kgp1352309-0_B_R_1801706364fwd/TA/Gtgacaaaccccatagttctcagggagtcttccacccatctacctctctga01/30/1210/27/16137Genomicunknown
ss483494363ILLUMINA|HumanOmni2.5-4v1_B_SNP16-25319867-0_B_R_1629039994fwd/TA/Gtgacaaaccccatagttctcagggagtcttccacccatctacctctctga01/30/1210/28/16137Genomicunknown
ss533691492ILLUMINA|HumanOmni5-4v1_B_kgp1352309-0_B_R_1801706364fwd/TA/Gtgacaaaccccatagttctcagggagtcttccacccatctacctctctga06/22/1208/29/15146Genomicunknown
ss564849047TISHKOFF|snp_chr16_25412366fwd/TA/Gtgacaaaccccatagttctcagggagtcttccacccatctacctctctga11/22/1211/23/12138Genomicunknown
ss660601075SSMP|16_25412366fwd/TA/Gtgacaaaccccatagttctcagggagtcttccacccatctacctctctga12/14/1202/14/15138Genomicunknown
ss779740613ILLUMINA|HumanOmni25Exome-8v1_A_kgp1352309-0_B_R_1801706364fwd/TA/Gtgacaaaccccatagttctcagggagtcttccacccatctacctctctga05/30/1307/10/15146Genomicunknown
ss781209842ILLUMINA|HumanOmni2.5-4v1_H_kgp1352309-0_B_R_1801706364fwd/TA/Gtgacaaaccccatagttctcagggagtcttccacccatctacctctctga05/30/1307/29/15146Genomicunknown
ss825580276ILLUMINA|HumanCNV370v1_C_rs7201268-121_T_F_IFB1135948322:0fwd/TA/Gtgacaaaccccatagttctcagggagtcttccacccatctacctctctga06/24/1311/21/14144Genomicunknown
ss833098199ILLUMINA|Human660W-Quad_v1_C_rs7201268-131_T_F_1864113623fwd/TA/Gtgacaaaccccatagttctcagggagtcttccacccatctacctctctga09/18/1307/02/15142Genomicunknown
ss833689027ILLUMINA|Human660W-Quad_v1_H_rs7201268-131_T_F_1864113623fwd/TA/Gtgacaaaccccatagttctcagggagtcttccacccatctacctctctga09/18/1307/02/15142Genomicunknown
ss835215490ILLUMINA|HumanOmni2.5-8v1_A_kgp1352309-0_B_R_1801706364fwd/TA/Gtgacaaaccccatagttctcagggagtcttccacccatctacctctctga09/18/1307/29/15146Genomicunknown
ss992396271EVA-GONL|EVA-GONL_rs7201268fwd/TA/Gtgacaaaccccatagttctcagggagtcttccacccatctacctctctga04/23/1404/30/14142Genomicunknown
ss1080565227JMKIDD_LAB|HGDP_WGS_chr16_25412366fwd/TA/Gtgacaaaccccatagttctcagggagtcttccacccatctacctctctga07/10/1407/12/14142Genomicunknown
ss13558297541000GENOMES|PHASE3_V1_69253902fwd/A/Gtgacaaaccccatagttctcagggagtcttccacccatctacctctctga08/16/1408/16/14142Genomicunknown
ss1397713438HAMMER_LAB|HAMMER_LAB_rs7201268fwd/TA/Gtgacaaaccccatagttctcagggagtcttccacccatctacctctctga09/30/1407/15/15146Genomicunknown
ss1427812355DDI|DDI_rs7201268fwd/TA/Gtgacaaaccccatagttctcagggagtcttccacccatctacctctctga11/04/1411/04/14144Genomicunknown
ss1577881344EVA_GENOME_DK|EVA_GENOME_DK_snv_rs7201268fwd/TA/Gtgacaaaccccatagttctcagggagtcttccacccatctacctctctga02/19/1502/19/15144Genomicunknown
ss1634233326EVA_UK10K_ALSPAC|EVA_UK10K_ALSPAC_16_25412366_38290944fwd/A/Gtgacaaaccccatagttctcagggagtcttccacccatctacctctctga03/04/1503/04/15144Genomicunknown
ss1677227359EVA_UK10K_TWINSUK|EVA_UK10K_TWINSUK_16_25412366_38290944fwd/A/Gtgacaaaccccatagttctcagggagtcttccacccatctacctctctga03/04/1503/04/15144Genomicunknown
ss1696430662EVA_DECODE|EVA_DECODE_16_25319867_224950_rs7201268fwd/TA/Gtgacaaaccccatagttctcagggagtcttccacccatctacctctctga03/02/1503/04/15144Genomicunknown
ss1713533502EVA_SVP|EVA_SVP_1227869fwd/TA/Gtgacaaaccccatagttctcagggagtcttccacccatctacctctctga03/12/1503/12/15144Genomicunknown
ss1808472876HAMMER_LAB|Hsieh_7499057fwd/TA/Gtgacaaaccccatagttctcagggagtcttccacccatctacctctctga07/15/1507/16/15146Genomicunknown
ss1935819358WEILL_CORNELL_DGM|SNV:chr16:25412366fwd/TA/Gtgacaaaccccatagttctcagggagtcttccacccatctacctctctga10/16/1510/19/15147Genomicunknown
ss1959669650ILLUMINA|rs7201268-138_T_F_2297778317fwd/TA/Gtgacaaaccccatagttctcagggagtcttccacccatctacctctctga11/13/1511/13/15147Genomicunknown
ss1968243980GENOMED|rs7201268fwd/TA/Gtgacaaaccccatagttctcagggagtcttccacccatctacctctctga02/16/1602/16/16147Genomicunknown
ss2028697203JJLAB|SNP9199758fwd/TA/Gtgacaaaccccatagttctcagggagtcttccacccatctacctctctga08/29/1608/31/16149Genomicunknown
ss2157108976USC_VALOUEV|NC_000016.9:g.25412366A>Gfwd/A/Gtgacaaaccccatagttctcagggagtcttccacccatctacctctctga11/17/1611/17/16150Genomicunknown
ss2211461366HUMAN_LONGEVITY|HLI-16-25401045-A-Gfwd/A/Gtgacaaaccccatagttctcagggagtcttccacccatctacctctctga11/18/1611/18/16150Genomicunknown
ss2376211983TOPMED|16_25412366_A/Gfwd/A/Gtgacaaaccccatagttctcagggagtcttccacccatctacctctctga11/19/1611/19/16150Genomicunknown
ss2628841609SYSTEMSBIOZJU|SYSTEMSBIOZJU_SNV5867231fwd/A/Gtgacaaaccccatagttctcagggagtcttccacccatctacctctctga01/06/1701/06/17151Genomicunknown
ss2633307516ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_kgp1352309-0_B_R_180170636fwd/A/Gtgacaaaccccatagttctcagggagtcttccacccatctacctctctga02/02/1702/02/17151Genomicunknown
ss2635063242ILLUMINA|Cancer_BeadChip_11459870_A_rs7201268-128_T_F_1782930595fwd/A/Gtgacaaaccccatagttctcagggagtcttccacccatctacctctctga02/02/1702/02/17151Genomicunknown
ss2701614860GRF|rs7201268fwd/A/Gtgacaaaccccatagttctcagggagtcttccacccatctacctctctga02/13/1702/13/17151Genomicunknown
ss2710830405ILLUMINA|Consortium-OncoArray_15047405_A_chr16_25412366_A_G-100_B_R_21966fwd/A/Gtgacaaaccccatagttctcagggagtcttccacccatctacctctctga03/22/1703/22/17151Genomicunknown
ss2941657451GNOMAD|rs7201268fwd/A/Gtgacaaaccccatagttctcagggagtcttccacccatctacctctctga05/23/1705/23/17151Genomicunknown
ss3014268165SWEGEN|NC_000016.9:g.25412366A>Gfwd/A/Gtgacaaaccccatagttctcagggagtcttccacccatctacctctctga05/30/1705/30/17151Genomicunknown
ss3021695624ILLUMINA|MEGA_Consortium_v2_15070954_A2_rs7201268-138_T_F_2297778317fwd/A/Gtgacaaaccccatagttctcagggagtcttccacccatctacctctctga06/28/1706/28/17151Genomicunknown
ss3028171964BIOINF_KMB_FNS_UNIBA|16.25401045A>Gfwd/A/Gtgacaaaccccatagttctcagggagtcttccacccatctacctctctga07/05/1707/05/17151Genomicunknown
ss3243166030TOPMED|TOPMed_freeze_5?chr16:25,401,045-01fwd/A/Gtgacaaaccccatagttctcagggagtcttccacccatctacctctctga10/01/1710/01/17151Genomicunknown
ss3243166031TOPMED|TOPMed_freeze_5?chr16:25,401,045-02fwd/A/Ttgacaaaccccatagttctcagggagtcttccacccatctacctctctga10/01/1710/01/17151Genomicunknown
ss3351391581CSHL|rs7201268fwd/A/Gtgacaaaccccatagttctcagggagtcttccacccatctacctctctga10/02/1710/02/17151Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs7201268|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='A/G/T'|mol=Genomic|build=151
 GTGGAGACGG GGTTTCATCA TGTTGGCCAG GCCGGTCTTA CTGCTGACCT CAAGTGATCG
 CCCACCTCGG CATTCCAAAG TGCTGGGATT ACAGTCATGA GCCACCATAC CTGGCCTTTT
 TTATTCATTA TTCTGAAATA CCATCAAAAC CTGCTTTGGT ATGGGTCTTC ATTCATGGTG
 ATGGGTCCTA AGAGGGTAAT TCTAAAAAAC TCAAGTCCTT CAATTATTGG GAAATTTATT
 TATTTATTTA TTAGTAATAT CCTGCCTCAT GTTTCTTCTA TCTGGAAATG CTTTCAGGTG
 AAATATGCAT TTTTTTCCCT ACATTGATAT GTACCAATGC CAACAGCATA CAGATACATG
 CTTTATACTT CTCAAGATCC CAAGAAAGTA TCAGAAGGGC TCTGAGATAA ATCATGGAGC
 ACACACTGAG CAATGTGCAT TGGGATAGCT GGATTTGGTA GGGAATTTTA AAAGCTGACA
 AACCCCATAG TTCTCAGGGA
 D
 GTCTTCCACC CATCTACCTC TCTGACTTGG ACTTGTTTAT ACTCTGGAGA CACATATTAT
 TAGACAATGG TCAATCAGAG CTCATCCAGC AGGTTAGCTC TCAATGGATA GGACCTTGTT
 AGATGTGGTG ATGACATTTG GATTTCTGCA GTCATTACTG TTGTGCCTCT GAGTTTCTCA
 TATGTGTGAC TCCACCTGAA ATGAGTTTCC CAGTTGAGCT TATCCTCCAG CATCACTCTA
 TAAAAATCCA CTTAAACTCC TGACTCAGGA TCCTCCTCTA GGACTTCAAC TATAGGGTCC
 TGGTTTCCAG AGGGCATGCA TATTCAAACC TTGAGAACTG ACCAGGCCCC AACACATAGA
 AGAAATGCAT GAGGCTCAGA GTCAGTGGGT GACTGTTTTC CCGTTGCCTT GACCCTGGGG
 TAGGATGGGT CACATTCTGG AGTAGGTGAA AGCATAACAT CTCCTTTCTC ACACTCCTGC
 AAGGGAAGCC TCTTAGGGAA

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_010393 ABBA01017125
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) . See additional population frequency from 1000Genome [here] back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceA/A
A/G
G/G
HWPA
G
ss118225731YRI 2IG 1.00000000 1.00000000
ss1355829754EAS 1008AF 0.001000000.99900001
EUR 1006AF 0.069600000.93040001
AFR 1322AF 0.003000000.99700004
AMR 694AF 0.031700000.96829998
SAS 978AF 0.003100000.99690002
ss136641403ENSEMBL_Watson 2IG 1.00000000 1.00000000
ss144108149ENSEMBL_Venter 2IG 1.00000000 1.00000000
ss168050665CEUEuropean 2IG 1.00000000 1.00000000
ss169477974YRISub-Saharan African 2IG 1.00000000 1.00000000
ss171122161PGP 2IG 1.00000000 1.00000000
ss227197780pilot_1_YRI_low_coverage_panel 118AF 1.00000000
ss236993225pilot_1_CEU_low_coverage_panel 120AF 0.125000000.87500000
ss243339550pilot_1_CHB+JPT_low_coverage_panel 120AF 1.00000000
ss90353217HapMap-CEUEuropean 226IG0.008849560.203539820.787610590.751830000.110619470.88938051
HapMap-HCBAsian 90IG 1.00000000 1.00000000
HapMap-JPTAsian 90IG 1.00000000 1.00000000
HapMap-YRISub-Saharan African 120IG 1.00000000 1.00000000
HAPMAP-ASW 98IG 0.061224490.938775541.000000000.030612250.96938777
HAPMAP-CHD 168IG 0.011904760.988095221.000000000.005952380.99404764
HAPMAP-MEX 100IG 0.060000000.940000001.000000000.030000000.97000003
HAPMAP-TSI 176IG0.011363640.102272730.886363630.250592000.062500000.93750000
ss96631828J. Craig Venter 2IG 1.00000000 1.00000000

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
Additional Freq. Data
0.039+/-0.1340000ALFRED: The Allele Frequency Database

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqWith1000GenomeDataUNKNOWNUNKNOWNUNKNOWN

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