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Reference SNP (refSNP) Cluster Report: rs7199196                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:116/151
Map to Genome Build:108/Weight 1
Validation Status:byClusterbyFreqwithHapMapFreqWith1000GenomeData
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:C/T (FWD)
Allele Origin:
Ancestral Allele:T
Variation Viewer:link to VariationViewer
Clinical Significance:NA
MAF/MinorAlleleCount:C=0.0715/358 (1000 Genomes)
C=0.0955/11997 (TOPMED)
HGVS Names
  • CM000678.2:g.54315695C>T
  • NC_000016.9:g.54349607C>T
Links , Linkout
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss10832008 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs7199196 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss10832008BCM_SSAHASNP|chr16.NT_010498.13_3073525byFreqfwd/BC/Tgtagctgttcttcatgcagtgggtccaactcttctatctctggttcttcaacacacaagc06/30/0310/25/06116Genomicunknown
ss14271764BCM_SSAHASNP|chr16.NT_010498.14_3073525fwd/BC/Tgtagctgttcttcatgcagtgggtccaactcttctatctctggttcttcaacacacaagc11/05/0311/22/03119Genomicunknown
ss16726462CSHL-HAPMAP|CSHL-HuAA-200402.chr16.NT_010498.14_3073525fwd/BC/Tgtagctgttcttcatgcagtgggtccaactcttctatctctggttcttcaacacacaagc02/17/0403/04/04120Genomicunknown
ss17572694CSHL-HAPMAP|CSHL-HuCC-200402.chr16.NT_010498.14_3073525fwd/BC/Tgtagctgttcttcatgcagtgggtccaactcttctatctctggttcttcaacacacaagc02/19/0403/04/04120Genomicunknown
ss20029124CSHL-HAPMAP|CSHL-HuFF-200402.chr16.NT_010498.14_3073525fwd/BC/Tgtagctgttcttcatgcagtgggtccaactcttctatctctggttcttcaacacacaagc02/21/0403/04/04120Genomicunknown
ss21356639SSAHASNP|WGSA-200403-chr16.chr16.NT_010498.14_3073525fwd/BC/Tgtagctgttcttcatgcagtgggtccaactcttctatctctggttcttcaacacacaagc03/19/0403/19/04121Genomicunknown
ss40749632ABI|hCV1318626fwd/BC/Tgtagctgttcttcatgcagtgggtccaactcttctatctctggttcttcaacacacaagc07/17/0507/17/05126Genomicunknown
ss66849739ILLUMINA|HumanHap300v1.1_rs7199196fwd/TC/Tgtagctgttcttcatgcagtgggtccaactcttctatctctggttcttcaacacacaagc11/09/0611/09/06127Genomicunknown
ss67554749ILLUMINA|HumanHap550v1.1_rs7199196fwd/BC/Tgtagctgttcttcatgcagtgggtccaactcttctatctctggttcttcaacacacaagc11/14/0611/14/06127Genomicunknown
ss67930520ILLUMINA|HumanHap650Yv1.0_rs7199196fwd/BC/Tgtagctgttcttcatgcagtgggtccaactcttctatctctggttcttcaacacacaagc11/14/0611/15/06127Genomicunknown
ss70915544ILLUMINA|HumanHap550v3.0__rs7199196rev/TA/Ggcttgtgtgttgaagaaccagagatagaagagttggacccactgcatgaagaacagctac04/20/0703/31/08130Genomicunknown
ss71514173ILLUMINA|HumanHap650Yv3.0_rs7199196fwd/BC/Tgtagctgttcttcatgcagtgggtccaactcttctatctctggttcttcaacacacaagc04/23/0704/23/07127Genomicunknown
ss75891756ILLUMINA|ILMN_Human_1M_rs7199196fwd/BC/Tgtagctgttcttcatgcagtgggtccaactcttctatctctggttcttcaacacacaagc08/28/0708/29/07129Genomicunknown
ss76830016AFFY|AFFY_6_1M_SNP_A-8691614rev/TA/Ggaaccagagatagaagagttggacccactgca08/28/0708/30/07130Genomicunknown
ss77116192HGSV|Cor12156_SNV_20070510.chr16_52907108fwd/BC/Tgtagctgttcttcatgcagtgggtccaactcttctatctctggttcttcaacacacaagc10/09/0710/11/07129Genomicunknown
ss78481429HGSV|Cor18507_SNV_20070510.chr16_52907108fwd/BC/Tgtagctgttcttcatgcagtgggtccaactcttctatctctggttcttcaacacacaagc10/19/0710/19/07129Genomicunknown
ss79249681ILLUMINA|HumanHap300v2.0_rs7199196fwd/BC/Tgtagctgttcttcatgcagtgggtccaactcttctatctctggttcttcaacacacaagc04/18/0711/18/07130Genomicunknown
ss84635799KRIBB_YJKIM|KHS764929fwd/BC/Tgtagctgttcttcatgcagtgggtccaactcttctatctctggttcttcaacacacaagc12/04/0712/07/07130Genomicunknown
ss90398146BCMHGSC_JDW|JWB-0947634fwd/BC/Tgtagctgttcttcatgcagtgggtccaactcttctatctctggttcttcaacacacaagc02/26/0802/29/08129Genomicunknown
ss96683844HUMANGENOME_JCVI|1103645478199fwd/BC/Tgtagctgttcttcatgcagtgggtccaactcttctatctctggttcttcaacacacaagc03/27/0803/27/08130Genomicunknown
ss106472266BGI|BGI_rs7199196fwd/BC/Tgtagctgttcttcatgcagtgggtccaactcttctatctctggttcttcaacacacaagc09/15/0806/18/09130Genomicunknown
ss1093346661000GENOMES|CEU.trio.12.15.2008_3292771_chr16_52907108fwd/BC/Tgtagctgttcttcatgcagtgggtccaactcttctatctctggttcttcaacacacaagc12/16/0812/16/08130Genomicunknown
ss1151108691000GENOMES|NA19240_2008_12_16_2957254_chr16_52907108fwd/BC/Tgtagctgttcttcatgcagtgggtccaactcttctatctctggttcttcaacacacaagc12/19/0812/19/08130Genomicunknown
ss118258193ILLUMINA-UK|NA18507_000054567_NCBI36.1_chr16_52907108fwd/BC/Tgtagctgttcttcatgcagtgggtccaactcttctatctctggttcttcaacacacaagc01/20/0901/21/09130Genomic99 %
ss122712930ILLUMINA|HumanCNV370v1_C_rs7199196fwd/BC/Tgtagctgttcttcatgcagtgggtccaactcttctatctctggttcttcaacacacaagc04/14/0904/15/09131Genomicunknown
ss132508210ENSEMBL|ENSSNP1225106fwd/BC/Tgtagctgttcttcatgcagtgggtccaactcttctatctctggttcttcaacacacaagc12/08/0810/15/09131Genomicunknown
ss136731577ENSEMBL|ENSSNP6270073fwd/BC/Tgtagctgttcttcatgcagtgggtccaactcttctatctctggttcttcaacacacaagc05/11/0905/15/09131Genomicunknown
ss154411900ILLUMINA|Human610_Quadv1_B_rs7199196-127_T_R_1501842029rev/TA/Ggcttgtgtgttgaagaaccagagatagaagagttggacccactgcatgaagaacagctac06/18/0906/20/09131Genomicunknown
ss157371673GMI|GMI_SNP_39347928fwd/BC/Tgtagctgttcttcatgcagtgggtccaactcttctatctctggttcttcaacacacaagc06/24/0906/25/09131Genomicunknown
ss159587003ILLUMINA|Human660W-Quad_v1_A_rs7199196-128_T_R_1501842029rev/TA/Ggcttgtgtgttgaagaaccagagatagaagagttggacccactgcatgaagaacagctac07/06/0907/07/09131Genomicunknown
ss160859190ILLUMINA|HumanOmni1-Quad_v1-0_B_rs7199196-128_T_R_1512210666rev/TA/Ggcttgtgtgttgaagaaccagagatagaagagttggacccactgcatgaagaacagctac08/04/0910/04/09131Genomicunknown
ss168232903COMPLETE_GENOMICS|NA07022_36_chr16_52907108fwd/BC/Tgtagctgttcttcatgcagtgggtccaactcttctatctctggttcttcaacacacaagc09/30/0909/30/09132Genomicunknown
ss169771672COMPLETE_GENOMICS|NA19240_36_chr16_52907108fwd/BC/Tgtagctgttcttcatgcagtgggtccaactcttctatctctggttcttcaacacacaagc10/01/0910/01/09132Genomicunknown
ss171263721COMPLETE_GENOMICS|NA20431_36_chr16_52907108fwd/BC/Tgtagctgttcttcatgcagtgggtccaactcttctatctctggttcttcaacacacaagc10/01/0910/01/09132Genomicunknown
ss172260442ILLUMINA|HumanCNV370-Quadv3_C_rs7199196-127_T_R_1501842029rev/TA/Ggcttgtgtgttgaagaaccagagatagaagagttggacccactgcatgaagaacagctac10/01/0910/04/09132Genomicunknown
ss174286042ILLUMINA|Human1M-Duov3_B_rs7199196-127_T_R_1501842029rev/TA/Ggcttgtgtgttgaagaaccagagatagaagagttggacccactgcatgaagaacagctac10/01/0910/04/09132Genomicunknown
ss201712647BUSHMAN|BUSHMAN-chr16-52907107fwd/BC/Tgtagctgttcttcatgcagtgggtccaactcttctatctctggttcttcaacacacaagc02/16/1003/08/10132Genomicunknown
ss207456867BCM-HGSC-SUB|BCM_CMT_1011-2785173fwd/BC/Tgtagctgttcttcatgcagtgggtccaactcttctatctctggttcttcaacacacaagc03/15/1003/18/10132Genomicunknown
ss2272501961000GENOMES|pilot_1_YRI_9059879_chr16_52907108fwd/C/Tgtagctgttcttcatgcagtgggtccaactcttctatctctggttcttcaacacacaagc04/22/1004/22/10132Genomicunknown
ss2370307511000GENOMES|pilot_1_CEU_6635380_chr16_52907108fwd/C/Tgtagctgttcttcatgcagtgggtccaactcttctatctctggttcttcaacacacaagc05/01/1005/01/10132Genomicunknown
ss2433687241000GENOMES|pilot_1_CHB+JPT_5253801_chr16_52907108fwd/C/Tgtagctgttcttcatgcagtgggtccaactcttctatctctggttcttcaacacacaagc05/01/1005/01/10132Genomicunknown
ss255712771BL|SNP58507_16_52907108fwd/BC/Tgtagctgttcttcatgcagtgggtccaactcttctatctctggttcttcaacacacaagc08/20/1008/20/10134Genomicunknown
ss282537393GMI|GMI_AK_SNP_6857810fwd/C/Tgtagctgttcttcatgcagtgggtccaactcttctatctctggttcttcaacacacaagc12/16/1012/16/10137Genomicunknown
ss287077912GMI|GMI_NA10851_SNP_3090703fwd/C/Tgtagctgttcttcatgcagtgggtccaactcttctatctctggttcttcaacacacaagc12/17/1012/17/10138Genomicunknown
ss291846137PJP|SNP_1352495_chr16_52907108fwd/C/Tgtagctgttcttcatgcagtgggtccaactcttctatctctggttcttcaacacacaagc01/21/1101/21/11134Genomicunknown
ss481502460ILLUMINA|HumanOmni2.5-4v1_B_rs7199196-128_T_R_1769754718fwd/BC/Ttgttcttcatgcagtgggtccaactcttctatctctggttcttcaacaca01/30/1210/28/16137Genomicunknown
ss481531032ILLUMINA|HumanOmniExpress-12v1_C_rs7199196-131_T_R_1857210679fwd/BC/Ttgttcttcatgcagtgggtccaactcttctatctctggttcttcaacaca01/30/1210/27/16137Genomicunknown
ss482507038ILLUMINA|HumanOmni1-Quad_v1-0_C_rs7199196-131_T_R_1865365167fwd/BC/Ttgttcttcatgcagtgggtccaactcttctatctctggttcttcaacaca01/30/1208/28/15146Genomicunknown
ss485546344ILLUMINA|HumanOmni2.5-4v1_D_rs7199196-131_T_R_1857210679fwd/BC/Ttgttcttcatgcagtgggtccaactcttctatctctggttcttcaacaca01/30/1210/27/16137Genomicunknown
ss537449042ILLUMINA|HumanOmni5-4v1_B_rs7199196-131_T_R_1894876217fwd/BC/Ttgttcttcatgcagtgggtccaactcttctatctctggttcttcaacaca06/22/1208/29/15146Genomicunknown
ss564909160TISHKOFF|snp_chr16_54349607fwd/BC/Ttgttcttcatgcagtgggtccaactcttctatctctggttcttcaacaca11/22/1211/23/12138Genomicunknown
ss660681023SSMP|16_54349607fwd/BC/Ttgttcttcatgcagtgggtccaactcttctatctctggttcttcaacaca12/14/1202/14/15138Genomicunknown
ss778967901ILLUMINA|HumanOmni25Exome-8v1_A_rs7199196-131_T_R_1865365167fwd/BC/Ttgttcttcatgcagtgggtccaactcttctatctctggttcttcaacaca05/30/1307/10/15146Genomicunknown
ss783218723ILLUMINA|HumanOmni2.5-4v1_H_rs7199196-131_T_R_1857210679fwd/BC/Ttgttcttcatgcagtgggtccaactcttctatctctggttcttcaacaca05/30/1307/29/15146Genomicunknown
ss784173244ILLUMINA|HumanOmniExpressExome-8v1_A_rs7199196-131_T_R_1894876217fwd/BC/Ttgttcttcatgcagtgggtccaactcttctatctctggttcttcaacaca05/31/1306/19/15146Genomicunknown
ss825580199ILLUMINA|HumanCNV370v1_C_rs7199196-126_T_R_IFB1137753782:0fwd/BC/Ttgttcttcatgcagtgggtccaactcttctatctctggttcttcaacaca06/24/1311/21/14144Genomicunknown
ss832478929ILLUMINA|HumanOmniExpress-12v1_H_rs7199196-131_T_R_1857210679fwd/BC/Ttgttcttcatgcagtgggtccaactcttctatctctggttcttcaacaca09/17/1306/18/15146Genomicunknown
ss834429908ILLUMINA|HumanOmni2.5-8v1_A_rs7199196-131_T_R_1865365167fwd/BC/Ttgttcttcatgcagtgggtccaactcttctatctctggttcttcaacaca09/18/1307/29/15146Genomicunknown
ss992504304EVA-GONL|EVA-GONL_rs7199196fwd/BC/Ttgttcttcatgcagtgggtccaactcttctatctctggttcttcaacaca04/23/1404/30/14142Genomicunknown
ss1080633949JMKIDD_LAB|HGDP_WGS_chr16_54349607fwd/BC/Ttgttcttcatgcagtgggtccaactcttctatctctggttcttcaacaca07/10/1407/12/14142Genomicunknown
ss13563086221000GENOMES|PHASE3_V1_69749536fwd/C/Ttgttcttcatgcagtgggtccaactcttctatctctggttcttcaacaca08/16/1408/16/14142Genomicunknown
ss1397715827HAMMER_LAB|HAMMER_LAB_rs7199196fwd/BC/Ttgttcttcatgcagtgggtccaactcttctatctctggttcttcaacaca09/30/1407/15/15146Genomicunknown
ss1427851730DDI|DDI_rs7199196fwd/BC/Ttgttcttcatgcagtgggtccaactcttctatctctggttcttcaacaca11/04/1411/04/14144Genomicunknown
ss1577919832EVA_GENOME_DK|EVA_GENOME_DK_snv_rs7199196fwd/BC/Ttgttcttcatgcagtgggtccaactcttctatctctggttcttcaacaca02/19/1502/19/15144Genomicunknown
ss1634455194EVA_UK10K_ALSPAC|EVA_UK10K_ALSPAC_16_54349607_38534573fwd/C/Ttgttcttcatgcagtgggtccaactcttctatctctggttcttcaacaca03/04/1503/04/15144Genomicunknown
ss1677449227EVA_UK10K_TWINSUK|EVA_UK10K_TWINSUK_16_54349607_38534573fwd/C/Ttgttcttcatgcagtgggtccaactcttctatctctggttcttcaacaca03/04/1503/04/15144Genomicunknown
ss1696538856EVA_DECODE|EVA_DECODE_16_52907108_333147_rs7199196fwd/BC/Ttgttcttcatgcagtgggtccaactcttctatctctggttcttcaacaca03/02/1503/04/15144Genomicunknown
ss1713540153EVA_SVP|EVA_SVP_1234520fwd/BC/Ttgttcttcatgcagtgggtccaactcttctatctctggttcttcaacaca03/12/1503/12/15144Genomicunknown
ss1752194690ILLUMINA|OmniExpressExome-8v1-1_B_rs7199196-131_T_R_1894876217fwd/BC/Ttgttcttcatgcagtgggtccaactcttctatctctggttcttcaacaca05/27/1506/09/15146Genomicunknown
ss1808519868HAMMER_LAB|Hsieh_7546253fwd/BC/Ttgttcttcatgcagtgggtccaactcttctatctctggttcttcaacaca07/15/1507/16/15146Genomicunknown
ss1935940455WEILL_CORNELL_DGM|SNV:chr16:54349607fwd/BC/Ttgttcttcatgcagtgggtccaactcttctatctctggttcttcaacaca10/16/1510/19/15147Genomicunknown
ss1968264425GENOMED|rs7199196fwd/BC/Ttgttcttcatgcagtgggtccaactcttctatctctggttcttcaacaca02/16/1602/16/16147Genomicunknown
ss2028752492JJLAB|SNP9255047fwd/BC/Ttgttcttcatgcagtgggtccaactcttctatctctggttcttcaacaca08/29/1608/31/16149Genomicunknown
ss2157188809USC_VALOUEV|NC_000016.9:g.54349607C>Tfwd/C/Ttgttcttcatgcagtgggtccaactcttctatctctggttcttcaacaca11/17/1611/17/16150Genomicunknown
ss2212289401HUMAN_LONGEVITY|HLI-16-54315695-C-Tfwd/C/Ttgttcttcatgcagtgggtccaactcttctatctctggttcttcaacaca11/18/1611/18/16150Genomicunknown
ss2628868134SYSTEMSBIOZJU|SYSTEMSBIOZJU_SNV5905707fwd/C/Ttgttcttcatgcagtgggtccaactcttctatctctggttcttcaacaca01/06/1701/06/17151Genomicunknown
ss2633319714ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_rs7199196-131_T_R_18948762fwd/C/Ttgttcttcatgcagtgggtccaactcttctatctctggttcttcaacaca02/02/1702/02/17151Genomicunknown
ss2701712184GRF|rs7199196fwd/C/Ttgttcttcatgcagtgggtccaactcttctatctctggttcttcaacaca02/13/1702/13/17151Genomicunknown
ss2943194763GNOMAD|rs7199196fwd/C/Ttgttcttcatgcagtgggtccaactcttctatctctggttcttcaacaca05/23/1705/23/17151Genomicunknown
ss3014538600SWEGEN|NC_000016.9:g.54349607C>Tfwd/C/Ttgttcttcatgcagtgggtccaactcttctatctctggttcttcaacaca05/30/1705/30/17151Genomicunknown
ss3028194831BIOINF_KMB_FNS_UNIBA|16.54315695C>Tfwd/C/Ttgttcttcatgcagtgggtccaactcttctatctctggttcttcaacaca07/05/1707/05/17151Genomicunknown
ss3246950583TOPMED|TOPMed_freeze_5?chr16:54,315,695fwd/C/Ttgttcttcatgcagtgggtccaactcttctatctctggttcttcaacaca10/01/1710/01/17151Genomicunknown
ss3351458672CSHL|rs7199196fwd/C/Ttgttcttcatgcagtgggtccaactcttctatctctggttcttcaacaca10/02/1710/02/17151Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs7199196|allelePos=389|totalLen=1318|taxid=9606|snpclass=1|alleles='C/T'|mol=Genomic|build=151
 ATTAGAAACT CACTTTTTCT TGAAGAGAGG AGAGTGCAGC AGTGCAATGT TGCGGAAGGC
 ACAGGGGTGG GAAAAGCATT TTTGTGTTGG TTTATGTGTC TTTGGACAAT CAGGAGGGAA
 ACAGTGTCCA gagtcagata atcctgtgct ggaatcccag ctgtgccaca tccgagtcta
 ctactttggt aagtcactta cctgtctgga cttacttttc tcacctgaaa aacggagACC
 AACCGGAATA CTTGCTTTAT GCATATGTGA tatcagttag gctaatgctt agctgctgta
 atagaaaggc cctcagtctc aatggctgaa cacaatagaa gctgtttctG GTGAGTGGGT
 AGCTGTTCTT CATGCAGTGG GTCCAAct
 Y
 cttctatctc tggttcttca acacacaagc ttctaagttc cccaccttgc ccgcatctgg
 cagaggaggc agaatgagca tgaggaccac ccgtgggaag ttgcatgggc caggctcaga
 aggggtgcac atcagtcctc tgcacattcc attggctggg cctcagctat gaaaaccagc
 ctctcagatc tcttgccacg gagagtgtga ccgactggca gccccagcgc catcaccctg
 gatttaccat cactttcatg taaagagagg ccctgcttct ccccagctgc tcccaCCAAG
 AATGgggaca ccttcaatgg gcaactctgg tgcaaagact ccccactggg ctggcagaaa
 ctttcttgga agtgtgatgc agtgtgagac ttctgctacg caaccctctt ctctccctgc
 tttgctcctc caggagtcaa acttcaggta gcctgaaagt tctccctgct ttcttctgct
 ctcccccaat cccaataaaa cacttgcaca tcaaatctca tctaggtgtc tctttctctg
 tcagcctgaa ctaaagcaca ggaccatact taactgcaag ggacactggg aaatgtagtt
 cagctgcgca gctgggtgga aaaggatgca ggtttggtga agagtgagcc agtccctggc
 acaGAGAAtt atgaggatta gataatatgt aaagtcctca gctctgggcc tgacgcacag
 caacacagta aatgGCTTGT CACCATTGCC ATTTGTACCA AGATAGTGAG TCCCTGCAAG
 CAAGCAGTGT GTCTCCTCAT TACACATGTG TCTTGGCCCA GCAGGTGGGC TGACCACTCA
 ACGAGGTTCC TCCAAATCAG AGCAGGGAAA GTCACAGGCA CATGCCCCAG TGTTCCAAGG
 AGGAGACGTT AGCTGGAGAG GAGCTGCCT

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_010498 ABBA01066504
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) . See additional population frequency from 1000Genome [here] back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceC/C
C/T
T/T
HWPC
T
ss10832008HapMap-CEUEuropean 226IG 0.212389380.787610590.583882000.106194690.89380533
HapMap-HCBAsian 90IG 1.00000000 1.00000000
HapMap-JPTAsian 90IG 1.00000000 1.00000000
HapMap-YRISub-Saharan African 224IG0.053571430.214285720.732142870.050043000.160714280.83928573
HAPMAP-ASW 98IG 0.265306120.734693880.654721000.132653060.86734694
HAPMAP-CHD 170IG 0.011764710.988235291.000000000.005882350.99411762
HAPMAP-GIH 176IG 0.056818180.943181811.000000000.028409090.97159094
HAPMAP-LWK 180IG0.033333340.200000000.766666650.250592000.133333340.86666667
HAPMAP-MEX 100IG 0.040000000.959999981.000000000.020000000.98000002
HAPMAP-MKK 286IG0.006993010.209790210.783216770.527089000.111888110.88811189
HAPMAP-TSI 176IG 0.125000000.875000001.000000000.062500000.93750000
ss118258193YRI 2IG 1.00000000 1.00000000
ss132508210ENSEMBL_Venter 2IG 1.00000000 0.500000000.50000000
ENSEMBL_celera 2IG 1.00000000 1.00000000
ss1356308622EAS 1008AF 1.00000000
EUR 1006AF 0.074600000.92540002
AFR 1322AF 0.150500000.84949994
AMR 694AF 0.063400000.93660003
SAS 978AF 0.040900000.95910001
ss136731577ENSEMBL_Watson 2IG 1.00000000 0.500000000.50000000
ss168232903CEUEuropean 2IG 1.00000000 1.00000000
ss169771672YRISub-Saharan African 2IG 1.00000000 1.00000000
ss171263721PGP 2IG 1.00000000 1.00000000
ss227250196pilot_1_YRI_low_coverage_panel 118AF 0.177966100.82203388
ss237030751pilot_1_CEU_low_coverage_panel 120AF 0.083333340.91666669
ss243368724pilot_1_CHB+JPT_low_coverage_panel 120AF 1.00000000
ss96683844J. Craig Venter 2IG 1.00000000 0.500000000.50000000

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
Additional Freq. Data
0.133+/-0.2210000ALFRED: The Allele Frequency Database

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqwithHapMapFreqWith1000GenomeDataUNKNOWNUNKNOWNUNKNOWN

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