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Reference SNP (refSNP) Cluster Report: rs679620                 ** With Benign allele **
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:83/151
Map to Genome Build:108/Weight 1
Validation Status:byClusterbyFreqwith2hitwithHapMapFreqWith1000GenomeData
Citation:PubMedLitVarNEW
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:A/G (REV)
Allele Origin:
Ancestral Allele:G
Variation Viewer:link to VariationViewer
Clinical Significance:With Benign allele [ClinVar]
MAF/MinorAlleleCount:T=0.4109/46622 (ExAC)
T=0.3478/1742 (1000 Genomes)
T=0.4528/5888 (GO-ESP)
T=0.4287/53835 (TOPMED)
HGVS Names
  • CM000673.2:g.102842889T>C
  • NC_000011.10:g.102842889T>C
  • NC_000011.9:g.102713620T>C
  • NG_012100.1:g.5723A>G
  • NM_002422.4:c.133A>G
  • NP_002413.1:p.Lys45Glu
  • NW_003871077.1:g.11124T>C
Links
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss281148979 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs679620 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss853176SC_JCM|AP000789.2_180731fwd/TA/Gtagaaatatctagaaaactactacgacctcaaaaagatgtgaaacagtttgttaggagaa07/27/0010/10/0383Genomicunknown
ss1526469LEE|442320fwd/TA/Gcagaaatatctagaaaactactacgacctcaaaaagatgtgaaacagtttgttaggagaa09/13/0010/10/0392cDNAunknown
ss2044395KWOK|OVLP-000925-213850fwd/TA/Gtagaaatatctagaaaactactacgacctcaaaaagatgtgaaacagtttgttaggagaa10/06/0010/10/0387Genomic97 %
ss2044466KWOK|OVLP-000925-224809fwd/TA/Gtagaaatatctagaaaactactacgacctcaaaaagatgtgaaacagtttgttaggagaa10/06/0010/10/0387Genomic97 %
ss2065833KWOK|OVLP-000925-200765fwd/TA/Gtagaaatatctagaaaactactacgacctcaaaaagatgtgaaacagtttgttaggagaa10/07/0010/10/0387Genomic94 %
ss2984773YUSUKE|IMS-JST006586byFreqrev/BC/Tttctcctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatatttcta05/24/0110/25/0696Genomicunknown
ss3186304HGBASE|SNP000571888fwd/TA/Gatatctagaaaactactacgacctcaaaaagatgtgaaacagtttgttag07/09/0110/10/0398Genomicunknown
ss4251046PGA-UW-FHCRC|MMP3-003521byFreqfwd/TA/Gtagaaatatctagaaaactactacgacctcaaaaagatgtgaaacagtttgttaggagaa11/06/0104/07/04102Genomicunknown
ss4394830LEE|ge442322fwd/TA/Gtagaaatatctagaaaactactacgacctcaaaaagatgtgaaacagtttgttaggagaa04/25/0210/10/03106cDNAunknown
ss4416825LEE|e442320fwd/TA/Gcagaaatatctagaaaactactacgacctcaaaaagatgtgaaacagtttgttaggagaa04/26/0210/10/03106cDNAunknown
ss16551080CSHL-HAPMAP|CSHL-HuAA-200402.chr11.NT_033899.6_6257472rev/BC/Tttctcctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatatttcta02/17/0403/04/04120Genomicunknown
ss24073656PERLEGEN|afd0611849byFreqrev/BC/Tttctcctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatatttcta08/10/0409/13/04123Genomicunknown
ss38804849ABI|hCV3047717byFreqrev/BC/Tttctcctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatatttcta07/16/0511/02/06126Genomicunknown
ss52088121PGA-UW-FHCRC|MMP3_003521byFreqfwd/TA/Gtagaaatatctagaaaactactacgacctcaaaaagatgtgaaacagtttgttaggagaa04/28/0608/14/07127Genomicunknown
ss66538914SHGC|1137byFreqfwd/TA/Gtagaaatatctagaaaactactacgacctcaaaaagatgtgaaacagtttgttaggagaa11/08/0612/16/06127Genomicunknown
ss69327210PERLEGEN|PGP00611849byFreqrev/BC/Tttctcctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatatttcta01/30/0708/14/07127Genomicunknown
ss71640578SHGC|1914byFreqfwd/TA/Gtagaaatatctagaaaactactacgacctcaaaaagatgtgaaacagtttgttaggagaa04/27/0708/14/07127Genomicunknown
ss74884623ILLUMINA|ILMN_Human_1M_rs679620fwd/TA/Gtagaaatatctagaaaactactacgacctcaaaaagatgtgaaacagtttgttaggagaa08/28/0708/29/07129Genomicunknown
ss76875025CGM_KYOTO|720770rev/BC/Tttctcctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatatttcta09/12/0709/12/07129cDNAunknown
ss84482814HGSV|Cor18517_SNV_20070510.chr11_102218830rev/BC/Tttctcctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatatttcta12/06/0712/07/07130Genomicunknown
ss86346291CANCER-GENOME|16285rev/BC/Tttctcctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatatttcta01/25/0801/25/08129Genomicunknown
ss88752081BCMHGSC_JDW|JWB-0471957rev/BC/Tttctcctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatatttcta02/26/0802/28/08129Genomicunknown
ss102994713BGI|BGI_rs679620rev/BC/Tttctcctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatatttcta06/05/0810/20/09130Genomicunknown
ss1109765081000GENOMES|CEU.trio.12.15.2008_2611642_chr11_102218830rev/BC/Tttctcctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatatttcta12/17/0812/17/08130Genomicunknown
ss119948488ILLUMINA-UK|NA18507_000133054_NCBI36.1_chr11_102218830rev/BC/Tttctcctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatatttcta01/21/0902/06/09131Genomic99 %
ss132785911ENSEMBL|ENSSNP10494101rev/BC/Tttctcctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatatttcta05/11/0905/14/09131Genomicunknown
ss156723584GMI|GMI_SNP_70165349rev/BC/Tttctcctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatatttcta06/24/0906/25/09131Genomicunknown
ss159724633SEATTLESEQ|MMP3-102218830rev/BC/Tttctcctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatatttcta07/10/0907/10/09131Genomicunknown
ss160811220ILLUMINA|HumanOmni1-Quad_v1-0_B_rs679620-128_B_R_1513908685rev/BC/Tttctcctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatatttcta08/04/0910/04/09131Genomicunknown
ss174118117ILLUMINA|Human1M-Duov3_B_rs679620-128_B_R_1513908685rev/BC/Tttctcctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatatttcta10/01/0910/04/09132Genomicunknown
ss203137483BUSHMAN|BUSHMAN-chr11-102218829byFreqrev/BC/Tttctcctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatatttcta02/16/1009/05/14132Genomicunknown
ss207808571BCM-HGSC-SUB|BCM_CMT_1011-2226780rev/BC/Tttctcctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatatttcta03/15/1003/19/10132Genomicunknown
ss2111878091000GENOMES|YRI.trio.3.2010_1054647_chr11_102218830rev/BC/Tttctcctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatatttcta03/29/1003/30/10132Genomicunknown
ss2254300351000GENOMES|pilot_1_YRI_7239718_chr11_102218830rev/C/Tttctcctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatatttcta04/22/1004/22/10132Genomicunknown
ss2356960821000GENOMES|pilot_1_CEU_5300711_chr11_102218830rev/C/Tttctcctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatatttcta05/01/1005/01/10132Genomicunknown
ss2422988941000GENOMES|pilot_1_CHB+JPT_4183971_chr11_102218830rev/C/Tttctcctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatatttcta05/01/1005/01/10132Genomicunknown
ss244306504ILLUMINA|CVDSNP55v1_A_rs679620rev/BC/Tttctcctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatatttcta06/10/1006/10/10132Genomicunknown
ss281148979GMI|GMI_AK_SNP_5469368rev/C/Tttctcctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatatttcta12/16/1012/16/10137Genomicunknown
ss286445886GMI|GMI_NA10851_SNP_2458675rev/C/Tttctcctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatatttcta12/17/1012/17/10138Genomicunknown
ss291127233PJP|SNP_633591_chr11_102218830rev/C/Tttctcctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatatttcta01/21/1101/21/11134Genomicunknown
ss342339129NHLBI-ESP|ESP2500-chr11-102713620byFreqrev/BC/Tttctcctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatatttcta03/25/1109/05/14134Genomicunknown
ss481359060ILLUMINA|HumanOmni2.5-4v1_B_rs679620-128_B_R_1735651067rev/BC/Tctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatat01/30/1210/28/16137Genomicunknown
ss481384911ILLUMINA|HumanOmniExpress-12v1_C_rs679620-131_B_R_1862853010rev/BC/Tctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatat01/30/1210/27/16137Genomicunknown
ss482363455ILLUMINA|HumanOmni1-Quad_v1-0_C_rs679620-131_B_R_1865508019rev/BC/Tctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatat01/30/1208/28/15146Genomicunknown
ss485474722ILLUMINA|HumanOmni2.5-4v1_D_rs679620-131_B_R_1862853010rev/BC/Tctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatat01/30/1210/27/16137Genomicunknown
ss4910279391000GENOMES|20110521_exome_535737_chr11_102713620rev/BC/Tttctcctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatatttcta02/10/1202/22/12137Genomicunknown
ss491458244EXOME_CHIP|nonsyn_174470_chr_11_102713620rev/BC/Tttctcctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatatttcta03/05/1203/05/12137Genomicunknown
ss491653120CLINSEQ_SNP|SNV-chr11-102218830byFreqrev/BC/Tctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatat03/06/1209/05/14137Genomicunknown
ss537394470ILLUMINA|HumanOmni5-4v1_B_rs679620-131_B_R_1889526867rev/BC/Tctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatat06/22/1208/29/15146Genomicunknown
ss562788139TISHKOFF|snp_chr11_102713620rev/BC/Tctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatat11/22/1211/23/12138Genomicunknown
ss658310799SSMP|11_102713620rev/BC/Tctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatat12/14/1202/13/15138Genomicunknown
ss778952260ILLUMINA|HumanOmni25Exome-8v1_A_rs679620-131_B_R_1866976638rev/BC/Tctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatat05/30/1307/10/15146Genomicunknown
ss780903293ILLUMINA|HumanOmni25Exome-8v1_A_exm951505-0_B_F_1918293738rev/BC/Tctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatat05/30/1307/10/15142Genomicunknown
ss783182843ILLUMINA|HumanOmni2.5-4v1_H_rs679620-131_B_R_1862853010rev/BC/Tctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatat05/30/1307/29/15146Genomicunknown
ss783590511ILLUMINA|HumanOmniExpressExome-8v1_A_exm951505-0_B_F_1918293738rev/BC/Tctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatat05/31/1306/18/15142Genomicunknown
ss784138128ILLUMINA|HumanOmniExpressExome-8v1_A_rs679620-131_B_R_1889526867rev/BC/Tctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatat05/31/1306/18/15146Genomicunknown
ss832442509ILLUMINA|HumanOmniExpress-12v1_H_rs679620-131_B_R_1862853010rev/BC/Tctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatat09/17/1306/18/15146Genomicunknown
ss834414116ILLUMINA|HumanOmni2.5-8v1_A_rs679620-131_B_R_1866976638rev/BC/Tctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatat09/18/1307/29/15146Genomicunknown
ss974480940JMKIDD_LAB|KhoeSan_Exomes_chr11_102713620rev/BC/Tctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatat03/06/1403/06/14142Genomicunknown
ss988900775EVA-GONL|EVA-GONL_rs679620rev/BC/Tctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatat04/23/1404/25/14142Genomicunknown
ss1067527664JMKIDD_LAB|HGDP_exomes_chr11_102713620rev/BC/Tctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatat07/09/1407/09/14142Genomicunknown
ss1077999614JMKIDD_LAB|HGDP_WGS_chr11_102713620rev/BC/Tctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatat07/10/1407/12/14142Genomicunknown
ss13427306281000GENOMES|PHASE3_V1_55597704rev/C/Tctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatat08/16/1408/16/14142Genomicunknown
ss1397615675HAMMER_LAB|HAMMER_LAB_rs679620rev/BC/Tctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatat09/30/1407/15/15146Genomicunknown
ss1426743251DDI|DDI_rs679620rev/BC/Tctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatat11/04/1411/04/14144Genomicunknown
ss1575917286EVA_GENOME_DK|EVA_GENOME_DK_snv_rs679620rev/BC/Tctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatat02/19/1502/19/15144Genomicunknown
ss1584077723EVA_FINRISK|EVA_FINRISK_rs679620rev/BC/Tctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatat02/27/1502/27/15144Genomicunknown
ss1627334856EVA_UK10K_ALSPAC|EVA_UK10K_ALSPAC_11_102713620_30691337rev/C/Tctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatat03/04/1503/04/15144Genomicunknown
ss1670328889EVA_UK10K_TWINSUK|EVA_UK10K_TWINSUK_11_102713620_30691337rev/C/Tctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatat03/04/1503/04/15144Genomicunknown
ss1690608346EVA_EXAC|EVA_EXAC_5811520rev/C/Tctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatat03/04/1503/04/15144Genomicunknown
ss1711306883EVA_MGP|EVA_XIMO_422643rev/BC/Tctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatat03/09/1503/09/15144Genomicunknown
ss1751991179ILLUMINA|OmniExpressExome-8v1-1_B_exm951505-0_B_F_1918293738rev/BC/Tctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatat05/27/1506/09/15146Genomicunknown
ss1751991180ILLUMINA|OmniExpressExome-8v1-1_B_rs679620-131_B_R_1889526867rev/BC/Tctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatat05/27/1506/09/15146Genomicunknown
ss1806970808HAMMER_LAB|Hsieh_5991023rev/BC/Tctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatat07/15/1507/16/15146Genomicunknown
ss1917865653ILLUMINA|HumanExome-12v1-1_B_exm951505-0_B_F_1918293738rev/BC/Tctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatat10/16/1510/16/15147Genomicunknown
ss1932263467WEILL_CORNELL_DGM|SNV:chr11:102713620rev/BC/Tctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatat10/16/1510/17/15147Genomicunknown
ss1946321062ILLUMINA|HumanCoreExome-12v1-0_C_exm951505-0_B_F_1918293738rev/BC/Tctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatat10/29/1510/29/15147Genomicunknown
ss1946321063ILLUMINA|HumanCoreExome-12v1-0_C_rs679620-131_B_R_1889526867rev/BC/Tctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatat10/29/1510/29/15147Genomicunknown
ss1959380813ILLUMINA|exm951505-0_B_F_1918293738rev/BC/Tctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatat11/13/1511/13/15147Genomicunknown
ss1959380814ILLUMINA|rs679620-131_B_R_1889526867rev/BC/Tctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatat11/13/1511/13/15147Genomicunknown
ss1967443793GENOMED|rs679620rev/BC/Tctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatat02/16/1602/16/16149Genomicunknown
ss2026876168JJLAB|SNP7378723rev/BC/Tctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatat08/29/1608/30/16149Genomicunknown
ss2185212563HUMAN_LONGEVITY|HLI-11-102842889-T-Crev/C/Tctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatat11/18/1611/18/16150Genomicunknown
ss2635029844ILLUMINA|Cancer_BeadChip_11459870_A_rs679620-128_B_R_1735651067rev/C/Tctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatat02/02/1702/02/17151Genomicunknown
ss3027236900BIOINF_KMB_FNS_UNIBA|11.102842889T>Crev/C/Tctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatat07/05/1707/05/17151Genomicunknown
ss3154854269TOPMED|TOPMed_freeze_5?chr11:102,842,889rev/C/Tctaacaaactgtttcacatctttttgaggtcgtagtagttttctagatat09/30/1709/30/17151Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs679620|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='A/G'|mol=Genomic|build=151
 AACCATTCTG TGTGTCTTAA AACCCACATA GAATGCTTGA GCTTACTGTG TAGGAACAGT
 TCAAGAATAG AGAGTTATAG AGTGTTGGAA GTGGAAAAGG TCTCATTATC ACACCATTTG
 GGCTTCTCCT CTTATGTAGG AAGAAACAAA GGCCAGAAAT ATTAGGTGTT TTCTTAAGAT
 CACACAACAC CATAGCAGTA GCAGCACTGG GGCTTAAGGC ACATGAGTAA CAAGTGGAGA
 GTGGATGAAC CATATCTTGC TTTGGAACAG CTTCAGTTTT TTTTTTAATG CAACGTAATT
 TTAGCTAAAT ATTTGTGTTG CTAGTATCAT ATTATAAAAT TTGCCATTAT TTCAGCAAGC
 TAGAGAAATA CTCCAAATAG ATTAAGAAGT GAGCAACTGC AAAAACTTAC TATAAATAGA
 TAGCTATAGT AAAAATTGTA AGAGTGACCT AAAAACTATA CTTATTCTGT TAGAAATATC
 TAGAAAACTA CTACGACCTC
 R
 AAAAAGATGT GAAACAGTTT GTTAGGAGAA AGGACAGTGG TCCTGTTGTT AAAAAAATCC
 GAGAAATGCA GAAGTTCCTT GGATTGGAGG TGACGGGGAA GCTGGACTCC GACACTCTGG
 AGGTGATGCG CAAGCCCAGG TGTGGAGTTC CTGATGTTGG TCACTTCAGA ACCTTTCCTG
 GCATCCCGAA GTGGAGGAAA ACCCACCTTA CATACAGGTA ATGGTTCAGA GGGGTTTTCA
 CATAAGATTG GAATTTTATA AACTATATCA TAGGAGAAAA TAGCATCTGC TTCAATTTTT
 CTCCTACAGG ATTGTGAATT ATACACCAGA TTTGCCAAAA GATGCTGTTG ATTCTGCTGT
 TGAGAAAGCT CTGAAAGTCT GGGAAGAGGT GACTCCACTC ACATTCTCCA GGCTGTATGA
 AGGAGAGGCT GATATAATGA TCTCTTTTGC AGTTAGAGGT AAAAAAAAAA AAAAAAAAAA
 AAAAGCAAAA CAAAACAAAA

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
X05232 AP000619 AP000789.2 AP001018 AP001144 AP001144.2 Hs.83326 U78045 U78045.1
dbSNP Blast Analysis
UniGene Cluster ID
375129
3D structure mapping
NP_002413  

  Population Diversity (Alleles in RefSNP orientation) . See additional population frequency from 1000Genome [here] Note: rs679620 allele is reverse to the genome back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceA
A/A
A/G
G
G/G
HWPA
G
ss119948488YRI 2IG 1.00000000 0.500000000.50000000
ss132785911ENSEMBL_Watson 2IG 1.00000000 1.00000000
ss1342730628EAS 1008AF 0.334299980.66569996
EUR 1006AF 0.472200010.52780002
AFR 1322AF 0.329000000.67100000
AMR 694AF 0.321300000.67869997
SAS 978AF 0.278100010.72189999
ss1690608346ExAc_Aggregated_Populations121306AF 0.429624260.57037574
ss203137483BUSHMAN_POP 4IG 1.00000000 0.500000000.50000000
ss225430035pilot_1_YRI_low_coverage_panel 118AF 0.406779650.59322035
ss235696082pilot_1_CEU_low_coverage_panel 120AF 0.558333340.44166666
ss24073656AFD_EUR_PANELEuropean 48IG 0.416666660.50000000 0.083333340.583882000.666666690.33333334
AFD_AFR_PANELAfrican American 46IG 0.217391300.30434781 0.478260870.099721000.369565220.63043481
AFD_CHN_PANELAsian 48IG 0.125000000.58333331 0.291666660.342782000.416666660.58333331
ss242298894pilot_1_CHB+JPT_low_coverage_panel 120AF 0.275000010.72500002
ss2984773JBIC-allele 1470AF 0.324499990.67549998
ss342339129ESP_Cohort_Populations 4414GF 0.194381520.49207067 0.313547791.000000000.440416840.55958313
ss38804849HapMap-CEUEuropean 218IG 0.321100920.53211010 0.146788980.317310000.587155940.41284403
HapMap-HCBAsian 90IG 0.133333340.35555556 0.511111140.254213000.311111120.68888891
HapMap-JPTAsian 88IG 0.068181820.40909091 0.522727251.000000000.272727280.72727275
HapMap-YRISub-Saharan African 216IG 0.101851850.57407409 0.324074060.050043000.388888900.61111110
AoD_African_American 90AF 0.430000010.56999999
AoD_Caucasian 92AF 0.519999980.47999999
CABG_NORTHAMERICAN 2138GF 0.245088880.48643592 0.268475200.402784000.488306820.51169318
HAPMAP-ASW 96IG 0.104166660.52083331 0.375000000.402784000.364583340.63541669
HAPMAP-CHD 162IG 0.148148150.45679012 0.395061731.000000000.376543220.62345678
HAPMAP-GIH 174IG 0.057471260.39080459 0.551724140.751830000.252873570.74712646
HAPMAP-LWK 174IG 0.057471260.34482759 0.597701131.000000000.229885060.77011496
HAPMAP-MKK 282IG 0.085106380.43971631 0.475177320.751830000.304964540.69503546
HAPMAP-TSI 172IG 0.255813960.45348838 0.290697660.402784000.482558130.51744187
ss4251046PGA-AFRICAN-PANELAfrican American 40IG 0.250000000.30000001 0.449999990.099721000.400000010.60000002
PGA-EUROPEAN-PANELEuropean 46IG 0.434782590.47826087 0.086956520.751830000.673913060.32608697
CEPH 184AF 0.639999990.36000004
CHMJAsian 74IG0.28378379 0.71621621 0.283783790.71621621
ss491653120CSAgilent 1168GF 0.239239250.51651651 0.244244260.438578000.497497500.50250250
ss52088121HSP_GENO_PANEL 120IG 0.066666670.46666667 0.466666670.402784000.300000010.69999999
YRI_GENO_PANELSub-Saharan African 120IG 0.116666670.53333336 0.349999990.342782000.383333330.61666667
AAM_GENO_PANELAfrican American 124IG 0.161290320.48387095 0.354838701.000000000.403225810.59677422
CEU_GENO_PANELEuropean 120IG 0.266666680.60000002 0.133333340.099721000.566666660.43333334
CHB_GENO_PANELAsian 90IG 0.133333340.35555556 0.511111140.254213000.311111120.68888891
JPT_GENO_PANELAsian 90IG 0.066666670.42222223 0.511111140.751830000.277777790.72222221
ss66538914R24 46AF 0.610000010.38999996
ss69327210HapMap-CEUEuropean 120IG 0.266666680.60000002 0.133333340.099721000.566666660.43333334
HapMap-HCBAsian 90IG 0.133333340.35555556 0.511111140.254213000.311111120.68888891
HapMap-JPTAsian 90IG 0.066666670.40000001 0.533333361.000000000.266666680.73333335
HapMap-YRISub-Saharan African 120IG 0.116666670.53333336 0.349999990.342782000.383333330.61666667
ss71640578F24 48AF 0.540000020.46000001

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
0.484+/-0.0880000

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqwith2hitwithHapMapFreqWith1000GenomeData
DoubleHit found by:  BCM_SSAHASNPNCBI
UNKNOWNUNKNOWNYES

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