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Reference SNP (refSNP) Cluster Report: rs6770065                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:116/151
Map to Genome Build:108/Weight 1
Validation Status:byClusterbyFreqWith1000GenomeData
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:A/G (FWD)
Allele Origin:
Ancestral Allele:A
Variation Viewer:link to VariationViewer
Clinical Significance:NA
MAF/MinorAlleleCount:G=0.2310/1157 (1000 Genomes)
G=0.1989/24974 (TOPMED)
HGVS Names
  • CM000665.2:g.21350815A>G
  • NC_000003.11:g.21392307A>G
Links , Linkout
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss277040798 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs6770065 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss10026393BCM_SSAHASNP|chr3.NT_022517.15_2941378byFreqfwd/TA/Ggaaaagggagagtgagtgacataagagtgagggtagagcagttttgcagaatatttgaag06/27/0310/25/06116Genomicunknown
ss66784981ILLUMINA|HumanHap300v1.1_rs6770065fwd/TA/Ggaaaagggagagtgagtgacataagagtgagggtagagcagttttgcagaatatttgaag11/09/0611/09/06127Genomicunknown
ss67496730ILLUMINA|HumanHap550v1.1_rs6770065fwd/TA/Ggaaaagggagagtgagtgacataagagtgagggtagagcagttttgcagaatatttgaag11/14/0611/14/06127Genomicunknown
ss67857223ILLUMINA|HumanHap650Yv1.0_rs6770065fwd/TA/Ggaaaagggagagtgagtgacataagagtgagggtagagcagttttgcagaatatttgaag11/14/0611/14/06127Genomicunknown
ss68855172PERLEGEN|PGP07986908byFreqfwd/TA/Ggaaaagggagagtgagtgacataagagtgagggtagagcagttttgcagaatatttgaag01/30/0703/31/08127Genomicunknown
ss70885642ILLUMINA|HumanHap550v3.0__rs6770065fwd/TA/Ggaaaagggagagtgagtgacataagagtgagggtagagcagttttgcagaatatttgaag04/20/0703/31/08130Genomicunknown
ss71477398ILLUMINA|HumanHap650Yv3.0_rs6770065fwd/TA/Ggaaaagggagagtgagtgacataagagtgagggtagagcagttttgcagaatatttgaag04/23/0704/23/07127Genomicunknown
ss75803562ILLUMINA|ILMN_Human_1M_rs6770065fwd/TA/Ggaaaagggagagtgagtgacataagagtgagggtagagcagttttgcagaatatttgaag08/28/0708/29/07129Genomicunknown
ss78678363HGSV|Cor18507_SNV_20070510.chr3_21367311fwd/TA/Ggaaaagggagagtgagtgacataagagtgagggtagagcagttttgcagaatatttgaag10/19/0710/20/07129Genomicunknown
ss79233188ILLUMINA|HumanHap300v2.0_rs6770065fwd/TA/Ggaaaagggagagtgagtgacataagagtgagggtagagcagttttgcagaatatttgaag04/18/0711/18/07130Genomicunknown
ss84543277KRIBB_YJKIM|KHS739136fwd/TA/Ggaaaagggagagtgagtgacataagagtgagggtagagcagttttgcagaatatttgaag12/04/0712/07/07130Genomicunknown
ss117002661ILLUMINA-UK|NA18507_000034423_NCBI36.1_chr3_21367311byFreqfwd/TA/Ggaaaagggagagtgagtgacataagagtgagggtagagcagttttgcagaatatttgaag01/18/0909/05/14130Genomic99 %
ss122614453ILLUMINA|HumanCNV370v1_C_rs6770065fwd/TA/Ggaaaagggagagtgagtgacataagagtgagggtagagcagttttgcagaatatttgaag04/14/0904/15/09131Genomicunknown
ss154381570ILLUMINA|Human610_Quadv1_B_rs6770065-127_T_F_1501825664fwd/TA/Ggaaaagggagagtgagtgacataagagtgagggtagagcagttttgcagaatatttgaag06/18/0906/20/09131Genomicunknown
ss159557394ILLUMINA|Human660W-Quad_v1_A_rs6770065-128_T_F_1501825664fwd/TA/Ggaaaagggagagtgagtgacataagagtgagggtagagcagttttgcagaatatttgaag07/06/0907/07/09131Genomicunknown
ss160808066ILLUMINA|HumanOmni1-Quad_v1-0_B_rs6770065-128_T_F_1501825664fwd/TA/Ggaaaagggagagtgagtgacataagagtgagggtagagcagttttgcagaatatttgaag08/04/0910/04/09131Genomicunknown
ss172189765ILLUMINA|HumanCNV370-Quadv3_C_rs6770065-127_T_F_1501825664fwd/TA/Ggaaaagggagagtgagtgacataagagtgagggtagagcagttttgcagaatatttgaag10/01/0910/04/09132Genomicunknown
ss174106165ILLUMINA|Human1M-Duov3_B_rs6770065-127_T_F_1501825664fwd/TA/Ggaaaagggagagtgagtgacataagagtgagggtagagcagttttgcagaatatttgaag10/01/0910/04/09132Genomicunknown
ss2200201901000GENOMES|pilot_1_YRI_1829873_chr3_21367311fwd/A/Ggaaaagggagagtgagtgacataagagtgagggtagagcagttttgcagaatatttgaag04/22/1004/22/10132Genomicunknown
ss2317368361000GENOMES|pilot_1_CEU_1341465_chr3_21367311fwd/A/Ggaaaagggagagtgagtgacataagagtgagggtagagcagttttgcagaatatttgaag05/01/1005/01/10132Genomicunknown
ss2391652701000GENOMES|pilot_1_CHB+JPT_1050347_chr3_21367311fwd/A/Ggaaaagggagagtgagtgacataagagtgagggtagagcagttttgcagaatatttgaag05/01/1005/01/10132Genomicunknown
ss277040798GMI|GMI_AK_SNP_1361007fwd/A/Ggaaaagggagagtgagtgacataagagtgagggtagagcagttttgcagaatatttgaag12/16/1012/16/10137Genomicunknown
ss481349218ILLUMINA|HumanOmni2.5-4v1_B_rs6770065-128_T_F_1771248434fwd/TA/Ggggagagtgagtgacataagagtgagggtagagcagttttgcagaatatt01/30/1210/28/16137Genomicunknown
ss481374897ILLUMINA|HumanOmniExpress-12v1_C_rs6770065-131_T_F_1857049322fwd/TA/Ggggagagtgagtgacataagagtgagggtagagcagttttgcagaatatt01/30/1210/27/16137Genomicunknown
ss482354262ILLUMINA|HumanOmni1-Quad_v1-0_C_rs6770065-131_T_F_1865550818fwd/TA/Ggggagagtgagtgacataagagtgagggtagagcagttttgcagaatatt01/30/1208/28/15146Genomicunknown
ss485469791ILLUMINA|HumanOmni2.5-4v1_D_rs6770065-131_T_F_1857049322fwd/TA/Ggggagagtgagtgacataagagtgagggtagagcagttttgcagaatatt01/30/1210/28/16137Genomicunknown
ss537390567ILLUMINA|HumanOmni5-4v1_B_rs6770065-131_T_F_1891308425fwd/TA/Ggggagagtgagtgacataagagtgagggtagagcagttttgcagaatatt06/22/1208/28/15146Genomicunknown
ss556472920TISHKOFF|snp_chr3_21392307fwd/TA/Ggggagagtgagtgacataagagtgagggtagagcagttttgcagaatatt11/22/1211/23/12138Genomicunknown
ss650142507SSMP|3_21392307fwd/TA/Ggggagagtgagtgacataagagtgagggtagagcagttttgcagaatatt12/14/1202/10/15138Genomicunknown
ss778579912ILLUMINA|HumanOmni25Exome-8v1_A_rs6770065-131_T_F_1865550818fwd/TA/Ggggagagtgagtgacataagagtgagggtagagcagttttgcagaatatt05/30/1307/09/15142Genomicunknown
ss783180371ILLUMINA|HumanOmni2.5-4v1_H_rs6770065-131_T_F_1857049322fwd/TA/Ggggagagtgagtgacataagagtgagggtagagcagttttgcagaatatt05/30/1307/28/15142Genomicunknown
ss784135701ILLUMINA|HumanOmniExpressExome-8v1_A_rs6770065-131_T_F_1891308425fwd/TA/Ggggagagtgagtgacataagagtgagggtagagcagttttgcagaatatt05/31/1306/19/15142Genomicunknown
ss825563706ILLUMINA|HumanCNV370v1_C_rs6770065-116_T_F_IFB1136713896:0fwd/TA/Ggggagagtgagtgacataagagtgagggtagagcagttttgcagaatatt06/24/1311/21/14144Genomicunknown
ss832440019ILLUMINA|HumanOmniExpress-12v1_H_rs6770065-131_T_F_1857049322fwd/TA/Ggggagagtgagtgacataagagtgagggtagagcagttttgcagaatatt09/17/1306/18/15144Genomicunknown
ss833068555ILLUMINA|Human660W-Quad_v1_C_rs6770065-131_T_F_1857049322fwd/TA/Ggggagagtgagtgacataagagtgagggtagagcagttttgcagaatatt09/18/1307/02/15142Genomicunknown
ss833659383ILLUMINA|Human660W-Quad_v1_H_rs6770065-131_T_F_1857049322fwd/TA/Ggggagagtgagtgacataagagtgagggtagagcagttttgcagaatatt09/18/1307/02/15142Genomicunknown
ss834037019ILLUMINA|HumanOmni2.5-8v1_A_rs6770065-131_T_F_1865550818fwd/TA/Ggggagagtgagtgacataagagtgagggtagagcagttttgcagaatatt09/18/1307/28/15142Genomicunknown
ss978351742EVA-GONL|EVA-GONL_rs6770065fwd/TA/Ggggagagtgagtgacataagagtgagggtagagcagttttgcagaatatt04/23/1404/24/14142Genomicunknown
ss1070231703JMKIDD_LAB|HGDP_WGS_chr3_21392307fwd/TA/Ggggagagtgagtgacataagagtgagggtagagcagttttgcagaatatt07/10/1407/10/14142Genomicunknown
ss13030946711000GENOMES|PHASE3_V1_14323011fwd/A/Ggggagagtgagtgacataagagtgagggtagagcagttttgcagaatatt08/16/1408/16/14142Genomicunknown
ss1397331597HAMMER_LAB|HAMMER_LAB_rs6770065fwd/TA/Ggggagagtgagtgacataagagtgagggtagagcagttttgcagaatatt09/30/1409/30/14146Genomicunknown
ss1429352063DDI|DDI_rs6770065fwd/TA/Ggggagagtgagtgacataagagtgagggtagagcagttttgcagaatatt11/04/1411/04/14144Genomicunknown
ss1579874387EVA_GENOME_DK|EVA_GENOME_DK_snv_rs6770065fwd/TA/Ggggagagtgagtgacataagagtgagggtagagcagttttgcagaatatt02/19/1502/20/15144Genomicunknown
ss1587814476EVA_DECODE|EVA_DECODE_3_21367311_192107_rs6770065fwd/TA/Ggggagagtgagtgacataagagtgagggtagagcagttttgcagaatatt03/02/1503/03/15144Genomicunknown
ss1606574655EVA_UK10K_ALSPAC|EVA_UK10K_ALSPAC_3_21392307_7906787fwd/A/Ggggagagtgagtgacataagagtgagggtagagcagttttgcagaatatt03/04/1503/04/15144Genomicunknown
ss1649568688EVA_UK10K_TWINSUK|EVA_UK10K_TWINSUK_3_21392307_7906787fwd/A/Ggggagagtgagtgacataagagtgagggtagagcagttttgcagaatatt03/04/1503/04/15144Genomicunknown
ss1712559150EVA_SVP|EVA_SVP_253695fwd/TA/Ggggagagtgagtgacataagagtgagggtagagcagttttgcagaatatt03/12/1503/12/15144Genomicunknown
ss1752461880ILLUMINA|OmniExpressExome-8v1-1_B_rs6770065-131_T_F_1891308425fwd/TA/Ggggagagtgagtgacataagagtgagggtagagcagttttgcagaatatt05/27/1506/09/15146Genomicunknown
ss1921600497WEILL_CORNELL_DGM|SNV:chr3:21392307fwd/TA/Ggggagagtgagtgacataagagtgagggtagagcagttttgcagaatatt10/16/1510/17/15147Genomicunknown
ss1946076540ILLUMINA|HumanCoreExome-12v1-0_C_rs6770065-131_T_F_1891308425fwd/TA/Ggggagagtgagtgacataagagtgagggtagagcagttttgcagaatatt10/29/1510/29/15147Genomicunknown
ss1958543671ILLUMINA|rs6770065-131_T_F_1891308425fwd/TA/Ggggagagtgagtgacataagagtgagggtagagcagttttgcagaatatt11/13/1511/13/15147Genomicunknown
ss2021356184JJLAB|SNP1858739fwd/TA/Ggggagagtgagtgacataagagtgagggtagagcagttttgcagaatatt08/29/1608/30/16149Genomicunknown
ss2149422886USC_VALOUEV|NC_000003.11:g.21392307A>Gfwd/A/Ggggagagtgagtgacataagagtgagggtagagcagttttgcagaatatt11/17/1611/17/16150Genomicunknown
ss2249669938HUMAN_LONGEVITY|HLI-3-21350815-A-Gfwd/A/Ggggagagtgagtgacataagagtgagggtagagcagttttgcagaatatt11/18/1611/18/16150Genomicunknown
ss2416731423TOPMED|3_21392307_A/Gfwd/A/Ggggagagtgagtgacataagagtgagggtagagcagttttgcagaatatt11/19/1611/19/16150Genomicunknown
ss2625177087SYSTEMSBIOZJU|SYSTEMSBIOZJU_SNV1164136fwd/A/Ggggagagtgagtgacataagagtgagggtagagcagttttgcagaatatt01/06/1701/06/17151Genomicunknown
ss2633921231ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_rs6770065-131_T_F_18913084fwd/A/Ggggagagtgagtgacataagagtgagggtagagcagttttgcagaatatt02/02/1702/02/17151Genomicunknown
ss2704787105GRF|rs6770065fwd/A/Ggggagagtgagtgacataagagtgagggtagagcagttttgcagaatatt02/13/1702/13/17151Genomicunknown
ss2710966830ILLUMINA|Consortium-OncoArray_15047405_A_rs6770065-131_T_F_1891308425fwd/A/Ggggagagtgagtgacataagagtgagggtagagcagttttgcagaatatt03/22/1703/22/17151Genomicunknown
ss2790357993GNOMAD|rs6770065fwd/A/Ggggagagtgagtgacataagagtgagggtagagcagttttgcagaatatt05/18/1705/18/17151Genomicunknown
ss2991947834SWEGEN|NC_000003.11:g.21392307A>Gfwd/A/Ggggagagtgagtgacataagagtgagggtagagcagttttgcagaatatt05/30/1705/30/17151Genomicunknown
ss3022218839ILLUMINA|MEGA_Consortium_v2_15070954_A2_rs6770065-138_T_F_2264204757fwd/A/Ggggagagtgagtgacataagagtgagggtagagcagttttgcagaatatt06/28/1706/28/17151Genomicunknown
ss3024440343BIOINF_KMB_FNS_UNIBA|3.21350815A>Gfwd/A/Ggggagagtgagtgacataagagtgagggtagagcagttttgcagaatatt07/05/1707/05/17151Genomicunknown
ss3344918484CSHL|rs6770065fwd/A/Ggggagagtgagtgacataagagtgagggtagagcagttttgcagaatatt10/02/1710/02/17151Genomicunknown
ss3384559936TOPMED|TOPMed_freeze_5?chr3:21,350,815fwd/A/Ggggagagtgagtgacataagagtgagggtagagcagttttgcagaatatt10/03/1710/03/17151Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs6770065|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='A/G'|mol=Genomic|build=151
 GACAGAGGGC TTTTAGGGTC AAAGTACATG AAGGGCACCT TATAAAAATA ATATAAATCA
 ATTTCTTTTG TGTTTAAAGT AGTTTCAGTG AAATTTCTGT CATTTGCAAG TAAAGGAACA
 TTAATTCAAT TTTCAAAGCT CTCCATTTTA TAAACTGATG AAAAGTAATA ATGATGATAT
 AATAAAATAA TATTTAGACC AAAATTGATG TTGAGAAGGT AAGCAGATAG CCTAATACGT
 GTCAAAGATG AAATAAAAAA TACAGCTCTT AGGGCCTTTG CTGGTGGTAG CAGTATGTGT
 GGGGAAGGGG GTTACAAAAT AAGATCCAAA CTGAATAACT GGATATGTAT TTAAAAGTTT
 AGAAAAAAGT TTTAGGGGTA AGTTCTAGAG TAGGCTGAAC TTTTCAATAT ATAAAAATGA
 GGCTTTTCAT TTTTTGAGGA CTTTTTGTTG GTTTGTCTCA TTTGACTTCT GAAAAGGGAG
 AGTGAGTGAC ATAAGAGTGA
 R
 GGGTAGAGCA GTTTTGCAGA ATATTTGAAG GATATTCAAA AACAGATTTT AAATACTCAA
 TTTTAAATTA TTTGCATTTT TCCAATATCA AGCTCTTCTA CTTCCAAAAC TTTCAATAAA
 ATCTGTGATA CACATGACAA CCTAGAGTGA ATGATATATG GATGCGTGTG TGTGAATAAA
 AAAGGGTCTG AATTCATGGT AAACATACAC ACACACACAC ACACACACAC ACACACACAC
 AACCTGTAGC AGATACACAA AAGAAAAGAG AAAAAAACAA AGTATACCAC TACAAAAATA
 TCACCAAATC ACAAAGAAAG ACAGCAAGAC AGGAATGAAG TACAAAACAG GAAACAACTA
 ACAAATGGCA GTAATAAGTC CTTACGTATA TAATTACTTT ACATGTAAAT ATATTAAATT
 CTTCAATCAA AAGACACAAA GTGGCTGCAT GAATTAAAAA CAAAATCCAA CTATAAGTTG
 CCTTTCAAGA GACTCATTTT

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_022517
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) . See additional population frequency from 1000Genome [here] back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceA/A
A/G
G/G
HWPA
G
ss117002661HapMap-CEUEuropean 226IG0.522123870.424778760.053097340.371093000.734513280.26548672
HapMap-HCBAsian 86IG0.325581400.488372090.186046511.000000000.569767420.43023255
HapMap-JPTAsian 172IG0.383720930.546511650.069767450.050043000.656976760.34302327
HapMap-YRISub-Saharan African 226IG0.831858400.16814159 0.751830000.915929200.08407079
HAPMAP-ASW 98IG0.816326560.18367347 1.000000000.908163250.09183674
HAPMAP-CHBAsian 82IG0.365853670.487804890.146341461.000000000.609756110.39024389
HAPMAP-CHD 170IG0.258823540.494117650.247058821.000000000.505882380.49411765
HAPMAP-GIH 176IG0.568181810.352272720.079545450.527089000.744318190.25568181
HAPMAP-LWK 180IG0.888888900.11111111 1.000000000.944444420.05555556
HAPMAP-MEX 100IG0.720000030.259999990.020000001.000000000.850000020.15000001
HAPMAP-MKK 286IG0.664335670.307692320.027972030.751830000.818181810.18181819
HAPMAP-TSI 176IG0.568181810.340909090.090909090.273322000.738636370.26136363
ENSEMBL_Watson 2IG1.00000000 1.00000000
YRI 2IG 1.00000000 0.500000000.50000000
ENSEMBL_Venter 2IG1.00000000 1.00000000
ss1303094671EAS 1008AF 0.543700040.45630002
EUR 1006AF 0.750499960.24949999
AFR 1322AF 0.903900030.09610000
AMR 694AF 0.871799950.12820001
SAS 978AF 0.764800010.23520000
ss220020190pilot_1_YRI_low_coverage_panel 118AF 0.898305060.10169491
ss231736836pilot_1_CEU_low_coverage_panel 120AF 0.733333350.26666668
ss239165270pilot_1_CHB+JPT_low_coverage_panel 120AF 0.558333340.44166666
ss68855172HapMap-CEUEuropean 120IG0.533333360.416666660.050000000.527089000.741666670.25833333
HapMap-HCBAsian 90IG0.311111120.511111140.177777781.000000000.566666660.43333334
HapMap-JPTAsian 90IG0.333333340.555555580.111111110.273322000.611111100.38888890
HapMap-YRISub-Saharan African 120IG0.783333360.21666667 0.751830000.891666650.10833333

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
Additional Freq. Data
0.355+/-0.2270000ALFRED: The Allele Frequency Database

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqWith1000GenomeDataUNKNOWNUNKNOWNUNKNOWN

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