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Reference SNP (refSNP) Cluster Report: rs6013382                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:114/151
Map to Genome Build:108/Weight 1
Validation Status:byClusterbyFreqwith2hitwithHapMapFreqWith1000GenomeData
Association:NHGRI GWAS PheGenI
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:C/T (FWD)
Allele Origin:
Ancestral Allele:C
Variation Viewer:link to VariationViewer
Clinical Significance:NA
MAF/MinorAlleleCount:T=0.4517/2262 (1000 Genomes)
T=0.4755/59713 (TOPMED)
HGVS Names
  • CM000682.2:g.52086094C>T
  • NC_000020.10:g.50702633C>T
  • NC_000020.11:g.52086094C>T
  • NM_001319146.1:c.572-828G>A
  • NM_199427.2:c.1229-828G>A
  • XR_936849.2:n.61+2532C>T
Links , Linkout
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss283412984 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs6013382 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss8313184SC_SNP|NT_011362.7_15755540byFreqfwd/BC/Taggattcactcctcttctccacacttaactctcacttgttagaagtagctttcttttcac04/17/0305/17/04114Genomicunknown
ss66590127ILLUMINA|HumanHap300v1.1_rs6013382fwd/TC/Taggattcactcctcttctccacacttaactctcacttgttagaagtagctttcttttcac11/09/0611/09/06127Genomicunknown
ss67434004ILLUMINA|HumanHap550v1.1_rs6013382fwd/BC/Taggattcactcctcttctccacacttaactctcacttgttagaagtagctttcttttcac11/14/0611/14/06127Genomicunknown
ss67789525ILLUMINA|HumanHap650Yv1.0_rs6013382fwd/BC/Taggattcactcctcttctccacacttaactctcacttgttagaagtagctttcttttcac11/14/0611/14/06127Genomicunknown
ss68413660CSHL-HAPMAP|sanger:assay:4483751:1byFreqfwd/BC/Taggattcactcctcttctccacacttaactctcacttgttagaagtagctttcttttcac01/11/0701/16/07127NAunknown
ss70853963ILLUMINA|HumanHap550v3.0__rs6013382fwd/BC/Taggattcactcctcttctccacacttaactctcacttgttagaagtagctttcttttcac04/20/0703/31/08130Genomicunknown
ss71439942ILLUMINA|HumanHap650Yv3.0_rs6013382fwd/BC/Taggattcactcctcttctccacacttaactctcacttgttagaagtagctttcttttcac04/23/0704/23/07127Genomicunknown
ss74893447ILLUMINA|ILMN_Human_1M_rs6013382fwd/BC/Taggattcactcctcttctccacacttaactctcacttgttagaagtagctttcttttcac08/28/0708/29/07129Genomicunknown
ss77688898HGSV|Cor12156_SNV_20070510.chr20_50136040fwd/BC/Taggattcactcctcttctccacacttaactctcacttgttagaagtagctttcttttcac10/09/0710/14/07129Genomicunknown
ss79214053ILLUMINA|HumanHap300v2.0_rs6013382fwd/BC/Taggattcactcctcttctccacacttaactctcacttgttagaagtagctttcttttcac04/18/0711/18/07130Genomicunknown
ss84446700KRIBB_YJKIM|KHS712894fwd/BC/Taggattcactcctcttctccacacttaactctcacttgttagaagtagctttcttttcac12/04/0712/07/07130Genomicunknown
ss91724949BCMHGSC_JDW|JWB-1452174fwd/BC/Taggattcactcctcttctccacacttaactctcacttgttagaagtagctttcttttcac02/26/0803/02/08129Genomicunknown
ss96234832HUMANGENOME_JCVI|1103643220783fwd/BC/Taggattcactcctcttctccacacttaactctcacttgttagaagtagctttcttttcac03/25/0803/25/08130Genomicunknown
ss1120953371000GENOMES|CEU.trio.12.15.2008_3705852_chr20_50136040fwd/BC/Taggattcactcctcttctccacacttaactctcacttgttagaagtagctttcttttcac12/17/0812/17/08130Genomicunknown
ss1134449581000GENOMES|NA19240_2008_12_16_3347305_chr20_50136040fwd/BC/Taggattcactcctcttctccacacttaactctcacttgttagaagtagctttcttttcac12/18/0812/18/08130Genomicunknown
ss117574508ILLUMINA-UK|NA18507_000061334_NCBI36.1_chr20_50136040fwd/BC/Taggattcactcctcttctccacacttaactctcacttgttagaagtagctttcttttcac01/19/0901/19/09130Genomic99 %
ss122499933ILLUMINA|HumanCNV370v1_C_rs6013382fwd/BC/Taggattcactcctcttctccacacttaactctcacttgttagaagtagctttcttttcac04/14/0904/15/09131Genomicunknown
ss138257011ENSEMBL|ENSSNP5976836fwd/BC/Taggattcactcctcttctccacacttaactctcacttgttagaagtagctttcttttcac05/15/0905/17/09131Genomicunknown
ss142528309ENSEMBL|ENSSNP4647489fwd/BC/Taggattcactcctcttctccacacttaactctcacttgttagaagtagctttcttttcac12/08/0810/16/09131Genomicunknown
ss154348625ILLUMINA|Human610_Quadv1_B_rs6013382-127_B_F_1501808458fwd/BC/Taggattcactcctcttctccacacttaactctcacttgttagaagtagctttcttttcac06/18/0906/20/09131Genomicunknown
ss156515812GMI|GMI_SNP_86641086fwd/BC/Taggattcactcctcttctccacacttaactctcacttgttagaagtagctttcttttcac06/24/0906/25/09131Genomicunknown
ss159524909ILLUMINA|Human660W-Quad_v1_A_rs6013382-128_B_F_1501808458fwd/BC/Taggattcactcctcttctccacacttaactctcacttgttagaagtagctttcttttcac07/06/0907/07/09131Genomicunknown
ss160757288ILLUMINA|HumanOmni1-Quad_v1-0_B_rs6013382-128_B_F_1501808458fwd/BC/Taggattcactcctcttctccacacttaactctcacttgttagaagtagctttcttttcac08/04/0910/04/09131Genomicunknown
ss168273700COMPLETE_GENOMICS|NA07022_36_chr20_50136040fwd/BC/Taggattcactcctcttctccacacttaactctcacttgttagaagtagctttcttttcac09/30/0910/01/09132Genomicunknown
ss169844589COMPLETE_GENOMICS|NA19240_36_chr20_50136040fwd/BC/Taggattcactcctcttctccacacttaactctcacttgttagaagtagctttcttttcac10/01/0910/01/09132Genomicunknown
ss172080409ILLUMINA|HumanCNV370-Quadv3_C_rs6013382-127_B_F_1501808458fwd/BC/Taggattcactcctcttctccacacttaactctcacttgttagaagtagctttcttttcac10/01/0910/04/09132Genomicunknown
ss173962328ILLUMINA|Human1M-Duov3_B_rs6013382-127_B_F_1501808458fwd/BC/Taggattcactcctcttctccacacttaactctcacttgttagaagtagctttcttttcac10/01/0910/04/09132Genomicunknown
ss203915451BUSHMAN|BUSHMAN-chr20-50136039fwd/BC/Taggattcactcctcttctccacacttaactctcacttgttagaagtagctttcttttcac02/16/1003/09/10132Genomicunknown
ss208608114BCM-HGSC-SUB|BCM_CMT_1011-3160646fwd/BC/Taggattcactcctcttctccacacttaactctcacttgttagaagtagctttcttttcac03/15/1003/19/10132Genomicunknown
ss209090860ILLUMINA|ALS_iSelect_272541_A_rs6013382-127_B_F_IFB1223184787fwd/BC/Taggattcactcctcttctccacacttaactctcacttgttagaagtagctttcttttcac03/24/1003/24/10132Genomicunknown
ss2283976901000GENOMES|pilot_1_YRI_10207373_chr20_50136040fwd/C/Taggattcactcctcttctccacacttaactctcacttgttagaagtagctttcttttcac04/22/1004/22/10132Genomicunknown
ss2378632381000GENOMES|pilot_1_CEU_7467867_chr20_50136040fwd/C/Taggattcactcctcttctccacacttaactctcacttgttagaagtagctttcttttcac05/01/1005/01/10132Genomicunknown
ss2440289171000GENOMES|pilot_1_CHB+JPT_5913994_chr20_50136040fwd/C/Taggattcactcctcttctccacacttaactctcacttgttagaagtagctttcttttcac05/01/1005/01/10132Genomicunknown
ss283412984GMI|GMI_AK_SNP_7733405fwd/C/Taggattcactcctcttctccacacttaactctcacttgttagaagtagctttcttttcac12/16/1012/16/10137Genomicunknown
ss287470887GMI|GMI_NA10851_SNP_3483678fwd/C/Taggattcactcctcttctccacacttaactctcacttgttagaagtagctttcttttcac12/17/1012/17/10138Genomicunknown
ss292578418PJP|SNP_2084776_chr20_50136040fwd/C/Taggattcactcctcttctccacacttaactctcacttgttagaagtagctttcttttcac01/21/1101/21/11134Genomicunknown
ss481191176ILLUMINA|HumanOmni2.5-4v1_B_rs6013382-128_B_F_1771437190fwd/BC/Ttcactcctcttctccacacttaactctcacttgttagaagtagctttctt01/30/1210/28/16137Genomicunknown
ss481214173ILLUMINA|HumanOmniExpress-12v1_C_rs6013382-131_B_F_1856936453fwd/BC/Ttcactcctcttctccacacttaactctcacttgttagaagtagctttctt01/30/1210/27/16137Genomicunknown
ss482201568ILLUMINA|HumanOmni1-Quad_v1-0_C_rs6013382-131_B_F_1865682346fwd/BC/Ttcactcctcttctccacacttaactctcacttgttagaagtagctttctt01/30/1208/28/15146Genomicunknown
ss485390773ILLUMINA|HumanOmni2.5-4v1_D_rs6013382-131_B_F_1856936453fwd/BC/Ttcactcctcttctccacacttaactctcacttgttagaagtagctttctt01/30/1210/28/16137Genomicunknown
ss491562357EXOME_CHIP|.GWAS._278583_chr_20_50702633fwd/BC/Taggattcactcctcttctccacacttaactctcacttgttagaagtagctttcttttcac03/05/1203/06/12137Genomicunknown
ss537330070ILLUMINA|HumanOmni5-4v1_B_rs6013382-131_B_F_1885473584fwd/BC/Ttcactcctcttctccacacttaactctcacttgttagaagtagctttctt06/22/1208/29/15146Genomicunknown
ss566306424TISHKOFF|snp_chr20_50702633fwd/BC/Ttcactcctcttctccacacttaactctcacttgttagaagtagctttctt11/22/1211/23/12138Genomicunknown
ss662186670SSMP|20_50702633fwd/BC/Ttcactcctcttctccacacttaactctcacttgttagaagtagctttctt12/14/1202/14/15138Genomicunknown
ss778562606ILLUMINA|HumanOmni25Exome-8v1_A_rs6013382-131_B_F_1865682346fwd/BC/Ttcactcctcttctccacacttaactctcacttgttagaagtagctttctt05/30/1307/10/15146Genomicunknown
ss780685693ILLUMINA|HumanOmni25Exome-8v1_A_exm-rs6013382-131_B_F_1990483988fwd/BC/Ttcactcctcttctccacacttaactctcacttgttagaagtagctttctt05/30/1307/10/15146Genomicunknown
ss783140927ILLUMINA|HumanOmni2.5-4v1_H_rs6013382-131_B_F_1856936453fwd/BC/Ttcactcctcttctccacacttaactctcacttgttagaagtagctttctt05/30/1307/29/15146Genomicunknown
ss783359193ILLUMINA|HumanOmniExpressExome-8v1_A_exm-rs6013382-131_B_F_1990483988fwd/BC/Ttcactcctcttctccacacttaactctcacttgttagaagtagctttctt05/31/1306/19/15146Genomicunknown
ss784097141ILLUMINA|HumanOmniExpressExome-8v1_A_rs6013382-131_B_F_1885473584fwd/BC/Ttcactcctcttctccacacttaactctcacttgttagaagtagctttctt05/31/1306/19/15146Genomicunknown
ss825544571ILLUMINA|HumanCNV370v1_C_rs6013382-114_B_F_IFB1135108449:0fwd/BC/Ttcactcctcttctccacacttaactctcacttgttagaagtagctttctt06/24/1311/21/14144Genomicunknown
ss832400008ILLUMINA|HumanOmniExpress-12v1_H_rs6013382-131_B_F_1856936453fwd/BC/Ttcactcctcttctccacacttaactctcacttgttagaagtagctttctt09/17/1306/18/15146Genomicunknown
ss834019537ILLUMINA|HumanOmni2.5-8v1_A_rs6013382-131_B_F_1865682346fwd/BC/Ttcactcctcttctccacacttaactctcacttgttagaagtagctttctt09/18/1307/29/15146Genomicunknown
ss994812129EVA-GONL|EVA-GONL_rs6013382fwd/BC/Ttcactcctcttctccacacttaactctcacttgttagaagtagctttctt04/23/1405/01/14142Genomicunknown
ss1082269624JMKIDD_LAB|HGDP_WGS_chr20_50702633fwd/BC/Ttcactcctcttctccacacttaactctcacttgttagaagtagctttctt07/10/1407/12/14142Genomicunknown
ss13651284261000GENOMES|PHASE3_V1_78931113fwd/C/Ttcactcctcttctccacacttaactctcacttgttagaagtagctttctt08/16/1408/16/14142Genomicunknown
ss1397771400HAMMER_LAB|HAMMER_LAB_rs6013382fwd/BC/Ttcactcctcttctccacacttaactctcacttgttagaagtagctttctt09/30/1409/30/14146Genomicunknown
ss1429079143DDI|DDI_rs6013382fwd/BC/Ttcactcctcttctccacacttaactctcacttgttagaagtagctttctt11/04/1411/04/14144Genomicunknown
ss1579540216EVA_GENOME_DK|EVA_GENOME_DK_snv_rs6013382fwd/BC/Ttcactcctcttctccacacttaactctcacttgttagaagtagctttctt02/19/1502/20/15144Genomicunknown
ss1638969920EVA_UK10K_ALSPAC|EVA_UK10K_ALSPAC_20_50702633_43516540fwd/C/Ttcactcctcttctccacacttaactctcacttgttagaagtagctttctt03/04/1503/04/15144Genomicunknown
ss1681963953EVA_UK10K_TWINSUK|EVA_UK10K_TWINSUK_20_50702633_43516540fwd/C/Ttcactcctcttctccacacttaactctcacttgttagaagtagctttctt03/04/1503/04/15144Genomicunknown
ss1698874345EVA_DECODE|EVA_DECODE_20_50136040_364124_rs6013382fwd/BC/Ttcactcctcttctccacacttaactctcacttgttagaagtagctttctt03/02/1503/05/15144Genomicunknown
ss1713700884EVA_SVP|EVA_SVP_1394963fwd/BC/Ttcactcctcttctccacacttaactctcacttgttagaagtagctttctt03/12/1503/12/15144Genomicunknown
ss1752391625ILLUMINA|OmniExpressExome-8v1-1_B_exm-rs6013382-131_B_F_1990483988fwd/BC/Ttcactcctcttctccacacttaactctcacttgttagaagtagctttctt05/27/1506/09/15146Genomicunknown
ss1752391626ILLUMINA|OmniExpressExome-8v1-1_B_rs6013382-131_B_F_1885473584fwd/BC/Ttcactcctcttctccacacttaactctcacttgttagaagtagctttctt05/27/1506/09/15146Genomicunknown
ss1809542073HAMMER_LAB|Hsieh_8572952fwd/BC/Ttcactcctcttctccacacttaactctcacttgttagaagtagctttctt07/15/1507/16/15146Genomicunknown
ss1917948556ILLUMINA|HumanExome-12v1-1_B_exm-rs6013382-131_B_F_1990483988fwd/BC/Ttcactcctcttctccacacttaactctcacttgttagaagtagctttctt10/16/1510/16/15147Genomicunknown
ss1938328952WEILL_CORNELL_DGM|SNV:chr20:50702633fwd/BC/Ttcactcctcttctccacacttaactctcacttgttagaagtagctttctt10/16/1510/19/15147Genomicunknown
ss1946554921ILLUMINA|HumanCoreExome-12v1-0_C_exm-rs6013382-131_B_F_1990483988fwd/BC/Ttcactcctcttctccacacttaactctcacttgttagaagtagctttctt10/29/1510/29/15147Genomicunknown
ss1959923676ILLUMINA|exm-rs6013382-131_B_F_1990483988fwd/BC/Ttcactcctcttctccacacttaactctcacttgttagaagtagctttctt11/13/1511/13/15147Genomicunknown
ss1969151551GENOMED|rs6013382fwd/BC/Ttcactcctcttctccacacttaactctcacttgttagaagtagctttctt02/16/1602/16/16147Genomicunknown
ss2029944262JJLAB|SNP10446817fwd/BC/Ttcactcctcttctccacacttaactctcacttgttagaagtagctttctt08/29/1608/31/16149Genomicunknown
ss2158514806USC_VALOUEV|NC_000020.10:g.50702633C>Tfwd/C/Ttcactcctcttctccacacttaactctcacttgttagaagtagctttctt11/17/1611/17/16150Genomicunknown
ss2243486415HUMAN_LONGEVITY|HLI-20-52086094-C-Tfwd/C/Ttcactcctcttctccacacttaactctcacttgttagaagtagctttctt11/18/1611/18/16150Genomicunknown
ss2410031781TOPMED|20_50702633_C/Tfwd/C/Ttcactcctcttctccacacttaactctcacttgttagaagtagctttctt11/19/1611/19/16150Genomicunknown
ss2629466318SYSTEMSBIOZJU|SYSTEMSBIOZJU_SNV6658832fwd/C/Ttcactcctcttctccacacttaactctcacttgttagaagtagctttctt01/06/1701/06/17151Genomicunknown
ss2633810899ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_SoL-rs6013382-131_B_F_2131fwd/C/Ttcactcctcttctccacacttaactctcacttgttagaagtagctttctt02/02/1702/02/17151Genomicunknown
ss2633810900ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_rs6013382-131_B_F_18854735fwd/C/Ttcactcctcttctccacacttaactctcacttgttagaagtagctttctt02/02/1702/02/17151Genomicunknown
ss2633810901ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_seq-rs6013382-131_B_F_2130fwd/C/Ttcactcctcttctccacacttaactctcacttgttagaagtagctttctt02/02/1702/02/17151Genomicunknown
ss2704210128GRF|rs6013382fwd/C/Ttcactcctcttctccacacttaactctcacttgttagaagtagctttctt02/13/1702/13/17151Genomicunknown
ss2968432414GNOMAD|rs6013382fwd/C/Ttcactcctcttctccacacttaactctcacttgttagaagtagctttctt05/23/1705/23/17151Genomicunknown
ss2985218688AFFY|Axiom_PsorMich_Affx-16869676fwd/C/Ttcactcctcttctccacacttaactctcacttgttagaagtagctttctt05/24/1705/24/17151Genomicunknown
ss3018327800SWEGEN|NC_000020.10:g.50702633C>Tfwd/C/Ttcactcctcttctccacacttaactctcacttgttagaagtagctttctt05/30/1705/30/17151Genomicunknown
ss3022128244ILLUMINA|MEGA_Consortium_v2_15070954_A2_exm-rs6013382-131_B_F_1990483988fwd/C/Ttcactcctcttctccacacttaactctcacttgttagaagtagctttctt06/28/1706/28/17151Genomicunknown
ss3028805097BIOINF_KMB_FNS_UNIBA|20.52086094C>Tfwd/C/Ttcactcctcttctccacacttaactctcacttgttagaagtagctttctt07/05/1707/05/17151Genomicunknown
ss3352551200CSHL|rs6013382fwd/C/Ttcactcctcttctccacacttaactctcacttgttagaagtagctttctt10/02/1710/02/17151Genomicunknown
ss3362768744TOPMED|TOPMed_freeze_5?chr20:52,086,094fwd/C/Ttcactcctcttctccacacttaactctcacttgttagaagtagctttctt10/03/1710/03/17151Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs6013382|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='C/T'|mol=Genomic|build=151
 AAACTCCCAT TTAACTTGAC ATCCCAGAAT TGAATGTGGA AGAAGAGGTG AGATTTAAAT
 TACAAACAAC TGCTTCAAAT CAAGCTAAGA CCTGTGAAGA CGCTTACTAT AGTGTTTAAT
 CTATATGACA TCAGTTATTG AGCTTGTATT TCAAGTTAAA GTTTCTTACT TTTATAACTA
 CAGGCTAAAT TTTATTTATA ATATTAATGC ATAATTATGG CAGCAGGGGA CAAATAATAA
 AGAGCCATGG TCTTTAGAGT CCCATTCCCT GGAGACATTG CTAAGGGTTT CTAGTTGTTT
 TTGAGGTTGC TGCTTTAAAC GTCAGTTGAA TATACACAAA GATAAGCATC TTATCCTACA
 CACCCATCCT TTCCCTAACC TCTCCCCTGC ATTCTGGTGG TTGTGACTTT TACACTTTTA
 AGCTGAGTAG TAGCCTCACA TTTTAGTCCA TCAGCTTCTG AGATTTTTTG AGGATTCACT
 CCTCTTCTCC ACACTTAACT
 Y
 CTCACTTGTT AGAAGTAGCT TTCTTTTCAC CTTTAAGTAA AAAAATATTT CCATTCTGTC
 TGGTGAATTC TTATACTTTA ATCATTTTCA GATTTCAAGT TCAGAAGCCA ACTATAAATA
 ATTTAAATGG TGACTGGGAA TGTGATATTC ATCGGAGCCA AACACTGCAC CAGGATTACA
 ATCACTTCCT TATAAGTCTG CTGTCACACT CAGGCCAGTG GATGGCGTAA CCACCCATCA
 ATATAATTTT GTTTTCTTTT CTTACGTGTT GCTCATTTGG GGGCACATTT TAACTTGCTT
 CTTGATTAGA CTGTGTTTCT TGAAAGAAGG AATCTCAATT TCAGAAGTCA TCCACTCTCA
 TAATTTTGTA ACTTTCACAA GGAATTTTTT TTTTTTTTTT TGATACAGAG TCTCACTCTG
 TCGCCCAGGC TGGAGTGCAG TGACGCAATC TCAGCTCACT GCAAGCTCCG CCTCCCAGGT
 TCATGCCATT CTCCTGCCTC

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_011362 ABBA01052828
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) . See additional population frequency from 1000Genome [here] back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceC/C
C/T
T/T
HWPC
T
ss117574508YRI 2IG 1.00000000 1.00000000
ss1365128426EAS 1008AF 0.655799980.34420002
EUR 1006AF 0.497000010.50300002
AFR 1322AF 0.463700000.53630000
AMR 694AF 0.557600020.44240001
SAS 978AF 0.598200020.40179998
ss138257011ENSEMBL_Watson 2IG 1.00000000 0.500000000.50000000
ss142528309ENSEMBL_Venter 2IG 1.00000000 1.00000000
ss168273700CEUEuropean 2IG 1.00000000 0.500000000.50000000
ss169844589YRISub-Saharan African 2IG 1.00000000 1.00000000
ss203915451BUSHMAN_POP2 2IG 1.00000000 0.500000000.50000000
ss228397690pilot_1_YRI_low_coverage_panel 118AF 0.389830500.61016947
ss237863238pilot_1_CEU_low_coverage_panel 120AF 0.574999990.42500001
ss244028917pilot_1_CHB+JPT_low_coverage_panel 120AF 0.708333310.29166666
ss8313184HapMap-CEUEuropean 226IG0.283185840.495575220.221238941.000000000.530973430.46902654
HapMap-HCBAsian 86IG0.465116290.53488374 0.150222000.732558130.26744187
HapMap-JPTAsian 172IG0.465116290.418604640.116279070.751830000.674418630.32558140
HapMap-YRISub-Saharan African 226IG0.203539820.442477880.353982300.317310000.424778760.57522124
HAPMAP-ASW 98IG0.285714300.469387770.244897960.751830000.520408150.47959185
HAPMAP-CHBAsian 82IG0.560975610.365853670.073170731.000000000.743902440.25609756
HAPMAP-CHD 170IG0.482352940.400000010.117647060.479500000.682352960.31764707
HAPMAP-GIH 176IG0.272727280.454545470.272727280.402784000.500000000.50000000
HAPMAP-LWK 180IG0.255555570.500000000.244444441.000000000.505555570.49444443
HAPMAP-MEX 100IG0.300000010.419999990.280000000.273322000.509999990.49000001
HAPMAP-MKK 286IG0.370629370.426573430.202797200.150222000.583916070.41608390
HAPMAP-TSI 176IG0.318181810.420454530.261363630.150222000.528409060.47159091
ss96234832J. Craig Venter 2IG 1.00000000 0.500000000.50000000

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
Additional Freq. Data
0.495+/-0.0480000ALFRED: The Allele Frequency Database

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqwith2hitwithHapMapFreqWith1000GenomeData
DoubleHit found by:  BCM_SSAHASNPNCBI
UNKNOWNUNKNOWNUNKNOWN

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