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Reference SNP (refSNP) Cluster Report: rs4799088                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:111/151
Map to Genome Build:108/Weight 1
Validation Status:byClusterbyFreqwith2hitwithHapMapFreqWith1000GenomeData
Association:NHGRI GWAS PheGenI
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:A/G (FWD)
Allele Origin:
Ancestral Allele:G
Variation Viewer:link to VariationViewer
Clinical Significance:NA
MAF/MinorAlleleCount:G=0.4249/2128 (1000 Genomes)
G=0.3536/44396 (TOPMED)
HGVS Names
  • CM000680.2:g.79813548A>G
  • NC_000018.10:g.79813548A>G
  • NC_000018.9:g.77573548A>G
Links , Linkout
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss17602181 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs4799088 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss6623405WI_SSAHASNP|NT_010879.11_1800159fwd/TA/Gtaggtgcagttggtcatccatgggtggggtgcgtggagggaggatggagaagcttatcct02/12/0310/10/03111Genomicunknown
ss17602181CSHL-HAPMAP|CSHL-HuCC-200402.chr18.NT_010879.14_1801728byFreqfwd/TA/Gtaggtgcagttggtcatccatgggtggggtgcgtggagggaggatggagaagcttatcct02/19/0410/26/06120Genomicunknown
ss66652275ILLUMINA|HumanHap300v1.1_rs4799088fwd/TA/Gtaggtgcagttggtcatccatgggtggggtgcgtggagggaggatggagaagcttatcct11/09/0611/09/06127Genomicunknown
ss67378831ILLUMINA|HumanHap550v1.1_rs4799088fwd/TA/Gtaggtgcagttggtcatccatgggtggggtgcgtggagggaggatggagaagcttatcct11/14/0611/14/06127Genomicunknown
ss67757926ILLUMINA|HumanHap650Yv1.0_rs4799088fwd/TA/Gtaggtgcagttggtcatccatgggtggggtgcgtggagggaggatggagaagcttatcct11/14/0611/14/06127Genomicunknown
ss70826058ILLUMINA|HumanHap550v3.0__rs4799088fwd/TA/Gtaggtgcagttggtcatccatgggtggggtgcgtggagggaggatggagaagcttatcct04/20/0703/31/08130Genomicunknown
ss71408159ILLUMINA|HumanHap650Yv3.0_rs4799088fwd/TA/Gtaggtgcagttggtcatccatgggtggggtgcgtggagggaggatggagaagcttatcct04/23/0704/23/07127Genomicunknown
ss75494491ILLUMINA|ILMN_Human_1M_rs4799088fwd/TA/Gtaggtgcagttggtcatccatgggtggggtgcgtggagggaggatggagaagcttatcct08/28/0708/29/07129Genomicunknown
ss79196035ILLUMINA|HumanHap300v2.0_rs4799088fwd/TA/Gtaggtgcagttggtcatccatgggtggggtgcgtggagggaggatggagaagcttatcct04/18/0711/18/07130Genomicunknown
ss80918274HGSV|Cor18507_SNV_20070510.chr18_75674536fwd/TA/Gtaggtgcagttggtcatccatgggtggggtgcgtggagggaggatggagaagcttatcct11/26/0711/27/07130Genomicunknown
ss84357417KRIBB_YJKIM|KHS692346fwd/TA/Gtaggtgcagttggtcatccatgggtggggtgcgtggagggaggatggagaagcttatcct12/04/0712/07/07130Genomicunknown
ss84898071HGSV|Cor19240_SNV_20070510.chr18_75674536fwd/TA/Gtaggtgcagttggtcatccatgggtggggtgcgtggagggaggatggagaagcttatcct11/30/0712/08/07130Genomicunknown
ss1147184911000GENOMES|NA19240_2008_12_16_3207036_chr18_75674536fwd/TA/Gtaggtgcagttggtcatccatgggtggggtgcgtggagggaggatggagaagcttatcct12/18/0812/18/08130Genomicunknown
ss117965153ILLUMINA-UK|NA18507_000102759_NCBI36.1_chr18_75674536fwd/TA/Gtaggtgcagttggtcatccatgggtggggtgcgtggagggaggatggagaagcttatcct01/20/0901/20/09130Genomic99 %
ss122392336ILLUMINA|HumanCNV370v1_C_rs4799088fwd/TA/Gtaggtgcagttggtcatccatgggtggggtgcgtggagggaggatggagaagcttatcct04/14/0904/15/09131Genomicunknown
ss154318497ILLUMINA|Human610_Quadv1_B_rs4799088-127_T_F_1501779319fwd/TA/Gtaggtgcagttggtcatccatgggtggggtgcgtggagggaggatggagaagcttatcct06/18/0906/20/09131Genomicunknown
ss159495175ILLUMINA|Human660W-Quad_v1_A_rs4799088-128_T_F_1501779319fwd/TA/Gtaggtgcagttggtcatccatgggtggggtgcgtggagggaggatggagaagcttatcct07/06/0907/07/09131Genomicunknown
ss160713344ILLUMINA|HumanOmni1-Quad_v1-0_B_rs4799088-128_T_F_1501779319fwd/TA/Gtaggtgcagttggtcatccatgggtggggtgcgtggagggaggatggagaagcttatcct08/04/0910/04/09131Genomicunknown
ss161867886ENSEMBL|ENSSNP1484069byFreqfwd/TA/Gtaggtgcagttggtcatccatgggtggggtgcgtggagggaggatggagaagcttatcct09/24/0903/07/10131Genomicunknown
ss168603534COMPLETE_GENOMICS|NA07022_36_chr18_75674536fwd/TA/Gtaggtgcagttggtcatccatgggtggggtgcgtggagggaggatggagaagcttatcct09/30/0910/01/09132Genomicunknown
ss170471786COMPLETE_GENOMICS|NA19240_36_chr18_75674536fwd/TA/Gtaggtgcagttggtcatccatgggtggggtgcgtggagggaggatggagaagcttatcct10/01/0910/01/09132Genomicunknown
ss171923622ILLUMINA|HumanCNV370-Quadv3_C_rs4799088-127_T_F_1501779319fwd/TA/Gtaggtgcagttggtcatccatgggtggggtgcgtggagggaggatggagaagcttatcct10/01/0910/04/09132Genomicunknown
ss172069097COMPLETE_GENOMICS|NA20431_36_chr18_75674536fwd/TA/Gtaggtgcagttggtcatccatgggtggggtgcgtggagggaggatggagaagcttatcct10/01/0910/01/09132Genomicunknown
ss173819211ILLUMINA|Human1M-Duov3_B_rs4799088-127_T_F_1501779319fwd/TA/Gtaggtgcagttggtcatccatgggtggggtgcgtggagggaggatggagaagcttatcct10/01/0910/04/09132Genomicunknown
ss203562589BUSHMAN|BUSHMAN-chr18-75674535fwd/TA/Gtaggtgcagttggtcatccatgggtggggtgcgtggagggaggatggagaagcttatcct02/16/1003/09/10132Genomicunknown
ss2279996841000GENOMES|pilot_1_YRI_9809367_chr18_75674536fwd/A/Gtaggtgcagttggtcatccatgggtggggtgcgtggagggaggatggagaagcttatcct04/22/1004/22/10132Genomicunknown
ss2375714331000GENOMES|pilot_1_CEU_7176062_chr18_75674536fwd/A/Gtaggtgcagttggtcatccatgggtggggtgcgtggagggaggatggagaagcttatcct05/01/1005/01/10132Genomicunknown
ss2437997351000GENOMES|pilot_1_CHB+JPT_5684812_chr18_75674536fwd/A/Gtaggtgcagttggtcatccatgggtggggtgcgtggagggaggatggagaagcttatcct05/01/1005/01/10132Genomicunknown
ss283090689GMI|GMI_AK_SNP_7411108fwd/A/Gtaggtgcagttggtcatccatgggtggggtgcgtggagggaggatggagaagcttatcct12/16/1012/16/10137Genomicunknown
ss292119250PJP|SNP_1625608_chr18_75674536fwd/A/Gtaggtgcagttggtcatccatgggtggggtgcgtggagggaggatggagaagcttatcct01/21/1101/21/11134Genomicunknown
ss481053233ILLUMINA|HumanOmni2.5-4v1_B_rs4799088-128_T_F_1767715079fwd/TA/Ggcagttggtcatccatgggtggggtgcgtggagggaggatggagaagctt01/30/1210/28/16137Genomicunknown
ss481074770ILLUMINA|HumanOmniExpress-12v1_C_rs4799088-131_T_F_1857701093fwd/TA/Ggcagttggtcatccatgggtggggtgcgtggagggaggatggagaagctt01/30/1210/27/16137Genomicunknown
ss482067589ILLUMINA|HumanOmni1-Quad_v1-0_C_rs4799088-131_T_F_1865476238fwd/TA/Ggcagttggtcatccatgggtggggtgcgtggagggaggatggagaagctt01/30/1208/28/15146Genomicunknown
ss485321622ILLUMINA|HumanOmni2.5-4v1_D_rs4799088-131_T_F_1857701093fwd/TA/Ggcagttggtcatccatgggtggggtgcgtggagggaggatggagaagctt01/30/1210/28/16137Genomicunknown
ss491534999EXOME_CHIP|.GWAS._251225_chr_18_77573548fwd/TA/Gtaggtgcagttggtcatccatgggtggggtgcgtggagggaggatggagaagcttatcct03/05/1203/06/12137Genomicunknown
ss537276118ILLUMINA|HumanOmni5-4v1_B_rs4799088-131_T_F_1891300085fwd/TA/Ggcagttggtcatccatgggtggggtgcgtggagggaggatggagaagctt06/22/1208/29/15146Genomicunknown
ss565797041TISHKOFF|snp_chr18_77573548fwd/TA/Ggcagttggtcatccatgggtggggtgcgtggagggaggatggagaagctt11/22/1211/23/12138Genomicunknown
ss661645886SSMP|18_77573548fwd/TA/Ggcagttggtcatccatgggtggggtgcgtggagggaggatggagaagctt12/14/1202/14/15138Genomicunknown
ss778547795ILLUMINA|HumanOmni25Exome-8v1_A_rs4799088-131_T_F_1865476238fwd/TA/Ggcagttggtcatccatgggtggggtgcgtggagggaggatggagaagctt05/30/1307/10/15142Genomicunknown
ss780685365ILLUMINA|HumanOmni25Exome-8v1_A_exm-rs4799088-131_T_F_1990492607fwd/TA/Ggcagttggtcatccatgggtggggtgcgtggagggaggatggagaagctt05/30/1307/10/15142Genomicunknown
ss783106623ILLUMINA|HumanOmni2.5-4v1_H_rs4799088-131_T_F_1857701093fwd/TA/Ggcagttggtcatccatgggtggggtgcgtggagggaggatggagaagctt05/30/1307/29/15142Genomicunknown
ss783358851ILLUMINA|HumanOmniExpressExome-8v1_A_exm-rs4799088-131_T_F_1990492607fwd/TA/Ggcagttggtcatccatgggtggggtgcgtggagggaggatggagaagctt05/31/1306/19/15142Genomicunknown
ss784063741ILLUMINA|HumanOmniExpressExome-8v1_A_rs4799088-131_T_F_1891300085fwd/TA/Ggcagttggtcatccatgggtggggtgcgtggagggaggatggagaagctt05/31/1306/19/15142Genomicunknown
ss825526553ILLUMINA|HumanCNV370v1_C_rs4799088-120_T_F_IFB1152036127:0fwd/TA/Ggcagttggtcatccatgggtggggtgcgtggagggaggatggagaagctt06/24/1311/21/14144Genomicunknown
ss832365245ILLUMINA|HumanOmniExpress-12v1_H_rs4799088-131_T_F_1857701093fwd/TA/Ggcagttggtcatccatgggtggggtgcgtggagggaggatggagaagctt09/17/1306/18/15144Genomicunknown
ss833006559ILLUMINA|Human660W-Quad_v1_C_rs4799088-131_T_F_1857701093fwd/TA/Ggcagttggtcatccatgggtggggtgcgtggagggaggatggagaagctt09/18/1307/02/15142Genomicunknown
ss833597388ILLUMINA|Human660W-Quad_v1_H_rs4799088-131_T_F_1857701093fwd/TA/Ggcagttggtcatccatgggtggggtgcgtggagggaggatggagaagctt09/18/1307/02/15142Genomicunknown
ss834004490ILLUMINA|HumanOmni2.5-8v1_A_rs4799088-131_T_F_1865476238fwd/TA/Ggcagttggtcatccatgggtggggtgcgtggagggaggatggagaagctt09/18/1307/29/15142Genomicunknown
ss993992145EVA-GONL|EVA-GONL_rs4799088fwd/TA/Ggcagttggtcatccatgggtggggtgcgtggagggaggatggagaagctt04/23/1405/01/14142Genomicunknown
ss1081700222JMKIDD_LAB|HGDP_WGS_chr18_77573548fwd/TA/Ggcagttggtcatccatgggtggggtgcgtggagggaggatggagaagctt07/10/1407/12/14142Genomicunknown
ss13619862651000GENOMES|PHASE3_V1_75658988fwd/A/Ggcagttggtcatccatgggtggggtgcgtggagggaggatggagaagctt08/16/1408/16/14142Genomicunknown
ss1428304750DDI|DDI_rs4799088fwd/TA/Ggcagttggtcatccatgggtggggtgcgtggagggaggatggagaagctt11/04/1411/04/14144Genomicunknown
ss1578517547EVA_GENOME_DK|EVA_GENOME_DK_snv_rs4799088fwd/TA/Ggcagttggtcatccatgggtggggtgcgtggagggaggatggagaagctt02/19/1502/20/15144Genomicunknown
ss1637398055EVA_UK10K_ALSPAC|EVA_UK10K_ALSPAC_18_77573548_41773329fwd/A/Ggcagttggtcatccatgggtggggtgcgtggagggaggatggagaagctt03/04/1503/04/15144Genomicunknown
ss1680392088EVA_UK10K_TWINSUK|EVA_UK10K_TWINSUK_18_77573548_41773329fwd/A/Ggcagttggtcatccatgggtggggtgcgtggagggaggatggagaagctt03/04/1503/04/15144Genomicunknown
ss1698055793EVA_DECODE|EVA_DECODE_18_75674536_599789_rs4799088fwd/TA/Ggcagttggtcatccatgggtggggtgcgtggagggaggatggagaagctt03/02/1503/05/15144Genomicunknown
ss1713645701EVA_SVP|EVA_SVP_1339780fwd/TA/Ggcagttggtcatccatgggtggggtgcgtggagggaggatggagaagctt03/12/1503/12/15144Genomicunknown
ss1752270294ILLUMINA|OmniExpressExome-8v1-1_B_exm-rs4799088-131_T_F_1990492607fwd/TA/Ggcagttggtcatccatgggtggggtgcgtggagggaggatggagaagctt05/27/1506/09/15146Genomicunknown
ss1752270295ILLUMINA|OmniExpressExome-8v1-1_B_rs4799088-131_T_F_1891300085fwd/TA/Ggcagttggtcatccatgggtggggtgcgtggagggaggatggagaagctt05/27/1506/09/15146Genomicunknown
ss1809164815HAMMER_LAB|Hsieh_8193923fwd/TA/Ggcagttggtcatccatgggtggggtgcgtggagggaggatggagaagctt07/15/1507/16/15146Genomicunknown
ss1917928712ILLUMINA|HumanExome-12v1-1_B_exm-rs4799088-131_T_F_1990492607fwd/TA/Ggcagttggtcatccatgggtggggtgcgtggagggaggatggagaagctt10/16/1510/16/15147Genomicunknown
ss1937465203WEILL_CORNELL_DGM|SNV:chr18:77573548fwd/TA/Ggcagttggtcatccatgggtggggtgcgtggagggaggatggagaagctt10/16/1510/19/15147Genomicunknown
ss1946516668ILLUMINA|HumanCoreExome-12v1-0_C_exm-rs4799088-131_T_F_1990492607fwd/TA/Ggcagttggtcatccatgggtggggtgcgtggagggaggatggagaagctt10/29/1510/29/15147Genomicunknown
ss1946516671ILLUMINA|HumanCoreExome-12v1-0_C_rs4799088-131_T_F_1891300085fwd/TA/Ggcagttggtcatccatgggtggggtgcgtggagggaggatggagaagctt10/29/1510/29/15147Genomicunknown
ss1959824053ILLUMINA|exm-rs4799088-131_T_F_1990492607fwd/TA/Ggcagttggtcatccatgggtggggtgcgtggagggaggatggagaagctt11/13/1511/13/15147Genomicunknown
ss1959824054ILLUMINA|rs4799088-131_T_F_1891300085fwd/TA/Ggcagttggtcatccatgggtggggtgcgtggagggaggatggagaagctt11/13/1511/13/15147Genomicunknown
ss1968589906GENOMED|rs4799088fwd/TA/Ggcagttggtcatccatgggtggggtgcgtggagggaggatggagaagctt02/16/1602/16/16147Genomicunknown
ss2029509253JJLAB|SNP10011808fwd/TA/Ggcagttggtcatccatgggtggggtgcgtggagggaggatggagaagctt08/29/1608/31/16149Genomicunknown
ss2094803339ILLUMINA|Immuno_BeadChip_11419691_B_rs4799088-131_T_F_1865476238fwd/TA/Ggcagttggtcatccatgggtggggtgcgtggagggaggatggagaagctt09/27/1609/27/16150Genomicunknown
ss2095082452ILLUMINA|InfiniumImmunoArray-24v2-0_A_rs4799088-131_T_F_1865476238fwd/TA/Ggcagttggtcatccatgggtggggtgcgtggagggaggatggagaagctt09/27/1609/27/16150Genomicunknown
ss2158018044USC_VALOUEV|NC_000018.9:g.77573548A>Gfwd/A/Ggcagttggtcatccatgggtggggtgcgtggagggaggatggagaagctt11/17/1611/17/16150Genomicunknown
ss2223550438HUMAN_LONGEVITY|HLI-18-79813548-A-Gfwd/A/Ggcagttggtcatccatgggtggggtgcgtggagggaggatggagaagctt11/18/1611/18/16150Genomicunknown
ss2388956864TOPMED|18_77573548_A/Gfwd/A/Ggcagttggtcatccatgggtggggtgcgtggagggaggatggagaagctt11/19/1611/19/16150Genomicunknown
ss2629253257SYSTEMSBIOZJU|SYSTEMSBIOZJU_SNV6389821fwd/A/Ggcagttggtcatccatgggtggggtgcgtggagggaggatggagaagctt01/06/1701/06/17151Genomicunknown
ss2633506630ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_SoL-rs4799088-131_T_F_2131fwd/A/Ggcagttggtcatccatgggtggggtgcgtggagggaggatggagaagctt02/02/1702/02/17151Genomicunknown
ss2633506631ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_rs4799088-131_T_F_18913000fwd/A/Ggcagttggtcatccatgggtggggtgcgtggagggaggatggagaagctt02/02/1702/02/17151Genomicunknown
ss2702620794GRF|rs4799088fwd/A/Ggcagttggtcatccatgggtggggtgcgtggagggaggatggagaagctt02/13/1702/13/17151Genomicunknown
ss2710874226ILLUMINA|Consortium-OncoArray_15047405_A_rs4799088-131_T_F_1891300085fwd/A/Ggcagttggtcatccatgggtggggtgcgtggagggaggatggagaagctt03/22/1703/22/17151Genomicunknown
ss2959361156GNOMAD|rs4799088fwd/A/Ggcagttggtcatccatgggtggggtgcgtggagggaggatggagaagctt05/23/1705/23/17151Genomicunknown
ss2985123916AFFY|Axiom_PsorMich_Affx-15435813fwd/A/Ggcagttggtcatccatgggtggggtgcgtggagggaggatggagaagctt05/24/1705/24/17151Genomicunknown
ss3016924133SWEGEN|NC_000018.9:g.77573548A>Gfwd/A/Ggcagttggtcatccatgggtggggtgcgtggagggaggatggagaagctt05/30/1705/30/17151Genomicunknown
ss3021864650ILLUMINA|MEGA_Consortium_v2_15070954_A2_exm-rs4799088-131_T_F_1990492607fwd/A/Ggcagttggtcatccatgggtggggtgcgtggagggaggatggagaagctt06/28/1706/28/17151Genomicunknown
ss3021864651ILLUMINA|MEGA_Consortium_v2_15070954_A2_rs4799088-138_T_F_2264361563fwd/A/Ggcagttggtcatccatgggtggggtgcgtggagggaggatggagaagctt06/28/1706/28/17151Genomicunknown
ss3028587183BIOINF_KMB_FNS_UNIBA|18.79813548A>Gfwd/A/Ggcagttggtcatccatgggtggggtgcgtggagggaggatggagaagctt07/05/1707/05/17151Genomicunknown
ss3285408199TOPMED|TOPMed_freeze_5?chr18:79,813,548fwd/A/Ggcagttggtcatccatgggtggggtgcgtggagggaggatggagaagctt10/01/1710/01/17151Genomicunknown
ss3352149039CSHL|rs4799088fwd/A/Ggcagttggtcatccatgggtggggtgcgtggagggaggatggagaagctt10/02/1710/02/17151Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs4799088|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='A/G'|mol=Genomic|build=151
 ACAaggctga ggcaggagaa tcgcttgaac ccaggagggg gaggttgcgg tgagccgaga
 tcgcgccatt ggaatccagc ctgggtgaga gggtgagact ccatcttaaa ataaatgaat
 aaataaattt aaaaataaaa aaagaaagct atagaccagt atctttcacg aattcacatg
 cagaaccctc aacaaaatat taggaaattg aatccagcaa tgaataaagt tgctgcacca
 aatgagattt aatccaggca cacaagtctg gttcaacatt ctgagtcaaa cactgtactc
 caccatatca acagaagaga tatacaatca tattaattga tgcagaaaag cttttgacaa
 atccaacatc tactcacaat aaaaactccc agaaaactag aattagatcc tcaatttgat
 aaagaacatc cacaaaaaat ccacaTCTGA AGCCTTTTCA AGAAATGTTG TAGGTGCAGT
 TGGTCATCCA TGGGTGGGGT
 R
 GCGTGGAGGG AGGATGGAGA AGCTTATCCT AAaccttcca cctgctacac aaatcaacta
 aaagcagatc acagacttaa atgtaaacat aaaaccataa gagttctaga aaagataggg
 gaaattcact gggacacagg ggtaggcaaa gccttcttag acttgacaac aaaggtataa
 cccataaaaa gtaaacttga taaattggac ctcatcaaaa ttaaaaactg ccctgcaaaa
 gacattttaa gagcatgaag cgtaaaacta cagaatggga gaaaatattt gcaaaccacg
 tattcactaa aggaccaaag tttggaatat ataaagaact ctctaaatca ccggtaaaca
 aatattcaaa acatgtccag ttagacatgt acaagatgtg tgcacagacc tttcactgtg
 gaaaactcat ggaaggcaga caagcaggtg caaagacacc tagcaccgtc agcctttagg
 gaaatgcaaa ttaaaaccac

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_010879
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) . See additional population frequency from 1000Genome [here] back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceA/A
A/G
G/G
HWPA
G
ss117965153YRI 2IG 1.00000000 1.00000000
ss1361986265EAS 1008AF 0.530799980.46920002
EUR 1006AF 0.750499960.24949999
AFR 1322AF 0.539299960.46070001
AMR 694AF 0.537499960.46250001
SAS 978AF 0.515300040.48469999
ss161867886ENSEMBL_celera 6IG0.66666669 0.33333334 0.666666690.33333334
ss168603534CEUEuropean 2IG 1.00000000 0.500000000.50000000
ss170471786YRISub-Saharan African 2IG 1.00000000 0.500000000.50000000
ss172069097PGP 2IG 1.00000000 0.500000000.50000000
ss17602181HapMap-CEUEuropean 226IG0.557522120.380530980.061946901.000000000.747787590.25221238
HapMap-HCBAsian 86IG0.325581400.418604640.255813960.317310000.534883740.46511629
HapMap-JPTAsian 172IG0.302325580.511627910.186046510.751830000.558139560.44186047
HapMap-YRISub-Saharan African 226IG0.309734520.460177000.230088500.438578000.539823000.46017700
HAPMAP-ASW 98IG0.428571430.387755100.183673470.250592000.622448980.37755102
HAPMAP-CHBAsian 82IG0.341463420.487804890.170731711.000000000.585365830.41463414
HAPMAP-CHD 170IG0.352941190.505882380.141176480.654721000.605882350.39411765
HAPMAP-GIH 176IG0.306818190.534090940.159090910.402784000.573863630.42613637
HAPMAP-LWK 180IG0.244444440.477777780.277777790.751830000.483333320.51666665
HAPMAP-MEX 100IG0.340000000.380000000.280000000.099721000.529999970.47000000
HAPMAP-MKK 286IG0.223776220.517482520.258741260.751830000.482517480.51748252
HAPMAP-TSI 176IG0.704545440.261363630.034090910.654721000.835227250.16477273
ENSEMBL_Venter 2IG1.00000000 1.00000000
ss203562589BUSHMAN_POP2 2IG 1.00000000 0.500000000.50000000
ss227999684pilot_1_YRI_low_coverage_panel 118AF 0.542372880.45762712
ss237571433pilot_1_CEU_low_coverage_panel 120AF 0.725000020.27500001
ss243799735pilot_1_CHB+JPT_low_coverage_panel 120AF 0.474999990.52499998

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
Additional Freq. Data
0.489+/-0.0740000ALFRED: The Allele Frequency Database

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqwith2hitwithHapMapFreqWith1000GenomeData
DoubleHit found by:  BCM_SSAHASNP
UNKNOWNUNKNOWNUNKNOWN

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