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Reference SNP (refSNP) Cluster Report: rs4363506                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:111/151
Map to Genome Build:108/Weight 1
Validation Status:byClusterbyFreqwith2hitWith1000GenomeData
Citation:PubMedLitVarNEW
Association:NHGRI GWAS PheGenI
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:C/T (FWD)
Allele Origin:
Ancestral Allele:C
Variation Viewer:link to VariationViewer
Clinical Significance:NA
MAF/MinorAlleleCount:C=0.4698/2353 (1000 Genomes)
C=0.4236/53186 (TOPMED)
HGVS Names
  • CM000672.2:g.127476239T>C
  • NC_000010.10:g.129274503T>C
Links , Linkout
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss15471381 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs4363506 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss5813375SC_JCM|NT_008818.12_1959033fwd/BC/Tctttttaatagaaacattggttggactcataatgtttgcatcttctttgtatattccagt01/10/0310/10/03111Genomicunknown
ss15471381SC_SNP|NT_008818.15_508434byFreqfwd/BC/Tctttttaatagaaacattggttggactcataatgtttgcatcttctttgtatattccagt11/14/0310/30/04120Genomicunknown
ss20707385SSAHASNP|WGSA-200403-chr10.chr10.NT_008818.15_508434fwd/BC/Tctttttaatagaaacattggttggactcataatgtttgcatcttctttgtatattccagt03/18/0403/19/04121Genomicunknown
ss24595662PERLEGEN|afd4363750byFreqfwd/BC/Tctttttaatagaaacattggttggactcataatgtttgcatcttctttgtatattccagt08/10/0409/13/04123Genomicunknown
ss66586785ILLUMINA|HumanHap300v1.1_rs4363506fwd/BC/Tctttttaatagaaacattggttggactcataatgtttgcatcttctttgtatattccagt11/09/0611/09/06127Genomicunknown
ss67330083ILLUMINA|HumanHap550v1.1_rs4363506fwd/BC/Tctttttaatagaaacattggttggactcataatgtttgcatcttctttgtatattccagt11/14/0611/14/06127Genomicunknown
ss67730286ILLUMINA|HumanHap650Yv1.0_rs4363506fwd/BC/Tctttttaatagaaacattggttggactcataatgtttgcatcttctttgtatattccagt11/14/0611/14/06127Genomicunknown
ss69095721PERLEGEN|PGP04363750byFreqfwd/BC/Tctttttaatagaaacattggttggactcataatgtttgcatcttctttgtatattccagt01/30/0703/31/08127Genomicunknown
ss70801531ILLUMINA|HumanHap550v3.0__rs4363506fwd/BC/Tctttttaatagaaacattggttggactcataatgtttgcatcttctttgtatattccagt04/20/0703/30/08130Genomicunknown
ss71380439ILLUMINA|HumanHap650Yv3.0_rs4363506fwd/BC/Tctttttaatagaaacattggttggactcataatgtttgcatcttctttgtatattccagt04/23/0704/23/07127Genomicunknown
ss74949907ILLUMINA|ILMN_Human_1M_rs4363506fwd/BC/Tctttttaatagaaacattggttggactcataatgtttgcatcttctttgtatattccagt08/28/0708/29/07129Genomicunknown
ss76740106AFFY|AFFY_6_1M_SNP_A-8601427fwd/BC/Tcattggttggactcataatgtttgcatcttct08/28/0708/30/07130Genomicunknown
ss78608798HGSV|Cor18507_SNV_20070510.chr10_129164493fwd/BC/Tctttttaatagaaacattggttggactcataatgtttgcatcttctttgtatattccagt10/19/0710/20/07129Genomicunknown
ss79180424ILLUMINA|HumanHap300v2.0_rs4363506fwd/BC/Tctttttaatagaaacattggttggactcataatgtttgcatcttctttgtatattccagt04/18/0711/18/07130Genomicunknown
ss84257331KRIBB_YJKIM|KHS669431fwd/BC/Tctttttaatagaaacattggttggactcataatgtttgcatcttctttgtatattccagt12/04/0712/06/07130Genomicunknown
ss88402371BCMHGSC_JDW|JWB-0353564fwd/BC/Tctttttaatagaaacattggttggactcataatgtttgcatcttctttgtatattccagt02/26/0802/27/08129Genomicunknown
ss102924377BGI|BGI_rs4363506fwd/BC/Tctttttaatagaaacattggttggactcataatgtttgcatcttctttgtatattccagt06/05/0810/20/09135Genomicunknown
ss1098513221000GENOMES|CEU.trio.12.15.2008_2455458_chr10_129164493fwd/BC/Tctttttaatagaaacattggttggactcataatgtttgcatcttctttgtatattccagt12/16/0812/16/08130Genomicunknown
ss119325621ILLUMINA-UK|NA18507_000162198_NCBI36.1_chr10_129164493fwd/BC/Tctttttaatagaaacattggttggactcataatgtttgcatcttctttgtatattccagt01/21/0901/22/09130Genomic99 %
ss122300564ILLUMINA|HumanCNV370v1_C_rs4363506fwd/BC/Tctttttaatagaaacattggttggactcataatgtttgcatcttctttgtatattccagt04/14/0904/15/09131Genomicunknown
ss132178030ENSEMBL|ENSSNP6501475fwd/BC/Tctttttaatagaaacattggttggactcataatgtttgcatcttctttgtatattccagt05/11/0905/13/09131Genomicunknown
ss142598263ENSEMBL|ENSSNP3795777fwd/BC/Tctttttaatagaaacattggttggactcataatgtttgcatcttctttgtatattccagt12/08/0810/19/09131Genomicunknown
ss154291687ILLUMINA|Human610_Quadv1_B_rs4363506-128_B_F_1501775055fwd/BC/Tctttttaatagaaacattggttggactcataatgtttgcatcttctttgtatattccagt06/18/0906/20/09131Genomicunknown
ss155713064GMI|GMI_SNP_42827161fwd/BC/Tctttttaatagaaacattggttggactcataatgtttgcatcttctttgtatattccagt06/24/0906/24/09131Genomicunknown
ss159468634ILLUMINA|Human660W-Quad_v1_A_rs4363506-128_B_F_1501775055fwd/BC/Tctttttaatagaaacattggttggactcataatgtttgcatcttctttgtatattccagt07/06/0907/07/09131Genomicunknown
ss160675073ILLUMINA|HumanOmni1-Quad_v1-0_B_rs4363506-128_B_F_1501775055fwd/BC/Tctttttaatagaaacattggttggactcataatgtttgcatcttctttgtatattccagt08/04/0910/04/09131Genomicunknown
ss171782990ILLUMINA|HumanCNV370-Quadv3_C_rs4363506-128_B_F_1501775055fwd/BC/Tctttttaatagaaacattggttggactcataatgtttgcatcttctttgtatattccagt10/01/0910/04/09132Genomicunknown
ss173721463ILLUMINA|Human1M-Duov3_B_rs4363506-128_B_F_1501775055fwd/BC/Tctttttaatagaaacattggttggactcataatgtttgcatcttctttgtatattccagt10/01/0910/04/09132Genomicunknown
ss174810551COMPLETE_GENOMICS|NA20431_36_chr10_129164493fwd/BC/Tctttttaatagaaacattggttggactcataatgtttgcatcttctttgtatattccagt10/01/0910/05/09132Genomicunknown
ss202175144BUSHMAN|BUSHMAN-chr10-129164492fwd/BC/Tctttttaatagaaacattggttggactcataatgtttgcatcttctttgtatattccagt02/16/1003/08/10132Genomicunknown
ss209089729ILLUMINA|ALS_iSelect_272541_A_rs4363506-127_B_F_IFB1223194910fwd/BC/Tctttttaatagaaacattggttggactcataatgtttgcatcttctttgtatattccagt03/24/1003/24/10132Genomicunknown
ss2110634551000GENOMES|YRI.trio.3.2010_992300_chr10_129164493fwd/BC/Tctttttaatagaaacattggttggactcataatgtttgcatcttctttgtatattccagt03/29/1003/29/10132Genomicunknown
ss2250100171000GENOMES|pilot_1_YRI_6819700_chr10_129164493fwd/C/Tctttttaatagaaacattggttggactcataatgtttgcatcttctttgtatattccagt04/22/1004/22/10132Genomicunknown
ss2353832691000GENOMES|pilot_1_CEU_4987898_chr10_129164493fwd/C/Tctttttaatagaaacattggttggactcataatgtttgcatcttctttgtatattccagt05/01/1005/01/10132Genomicunknown
ss2420513171000GENOMES|pilot_1_CHB+JPT_3936394_chr10_129164493fwd/C/Tctttttaatagaaacattggttggactcataatgtttgcatcttctttgtatattccagt05/01/1005/01/10132Genomicunknown
ss280823545GMI|GMI_AK_SNP_5143882fwd/C/Tctttttaatagaaacattggttggactcataatgtttgcatcttctttgtatattccagt12/16/1012/16/10137Genomicunknown
ss290959767PJP|SNP_466125_chr10_129164493fwd/C/Tctttttaatagaaacattggttggactcataatgtttgcatcttctttgtatattccagt01/21/1101/21/11134Genomicunknown
ss480931879ILLUMINA|HumanOmni2.5-4v1_B_rs4363506-128_B_F_1770289305fwd/BC/Ttaatagaaacattggttggactcataatgtttgcatcttctttgtatatt01/30/1210/28/16137Genomicunknown
ss480951431ILLUMINA|HumanOmniExpress-12v1_C_rs4363506-131_B_F_1857579334fwd/BC/Ttaatagaaacattggttggactcataatgtttgcatcttctttgtatatt01/30/1210/27/16137Genomicunknown
ss481914829ILLUMINA|HumanOmni1-Quad_v1-0_C_rs4363506-131_B_F_1865501480fwd/BC/Ttaatagaaacattggttggactcataatgtttgcatcttctttgtatatt01/30/1208/28/15146Genomicunknown
ss485260970ILLUMINA|HumanOmni2.5-4v1_D_rs4363506-131_B_F_1857579334fwd/BC/Ttaatagaaacattggttggactcataatgtttgcatcttctttgtatatt01/30/1210/27/16137Genomicunknown
ss491442204EXOME_CHIP|.GWAS._158430_chr_10_129274503fwd/BC/Tctttttaatagaaacattggttggactcataatgtttgcatcttctttgtatattccagt03/05/1203/05/12137Genomicunknown
ss537230577ILLUMINA|HumanOmni5-4v1_B_rs4363506-131_B_F_1885472973fwd/BC/Ttaatagaaacattggttggactcataatgtttgcatcttctttgtatatt06/22/1208/29/15146Genomicunknown
ss562289266TISHKOFF|snp_chr10_129274503fwd/BC/Ttaatagaaacattggttggactcataatgtttgcatcttctttgtatatt11/22/1211/23/12138Genomicunknown
ss657554397SSMP|10_129274503fwd/BC/Ttaatagaaacattggttggactcataatgtttgcatcttctttgtatatt12/14/1202/12/15138Genomicunknown
ss778906804ILLUMINA|HumanOmni25Exome-8v1_A_rs4363506-131_B_F_1865501480fwd/BC/Ttaatagaaacattggttggactcataatgtttgcatcttctttgtatatt05/30/1307/10/15142Genomicunknown
ss780685015ILLUMINA|HumanOmni25Exome-8v1_A_exm-rs4363506-131_B_F_1990483202fwd/BC/Ttaatagaaacattggttggactcataatgtttgcatcttctttgtatatt05/30/1307/10/15142Genomicunknown
ss783076424ILLUMINA|HumanOmni2.5-4v1_H_rs4363506-131_B_F_1857579334fwd/BC/Ttaatagaaacattggttggactcataatgtttgcatcttctttgtatatt05/30/1307/29/15142Genomicunknown
ss783358490ILLUMINA|HumanOmniExpressExome-8v1_A_exm-rs4363506-131_B_F_1990483202fwd/BC/Ttaatagaaacattggttggactcataatgtttgcatcttctttgtatatt05/31/1306/18/15142Genomicunknown
ss784034131ILLUMINA|HumanOmniExpressExome-8v1_A_rs4363506-131_B_F_1885472973fwd/BC/Ttaatagaaacattggttggactcataatgtttgcatcttctttgtatatt05/31/1306/18/15142Genomicunknown
ss825510942ILLUMINA|HumanCNV370v1_C_rs4363506-123_B_F_IFB1135184530:0fwd/BC/Ttaatagaaacattggttggactcataatgtttgcatcttctttgtatatt06/24/1311/21/14144Genomicunknown
ss832334654ILLUMINA|HumanOmniExpress-12v1_H_rs4363506-131_B_F_1857579334fwd/BC/Ttaatagaaacattggttggactcataatgtttgcatcttctttgtatatt09/17/1306/18/15144Genomicunknown
ss832980116ILLUMINA|Human660W-Quad_v1_C_rs4363506-131_B_F_1857579334fwd/BC/Ttaatagaaacattggttggactcataatgtttgcatcttctttgtatatt09/18/1307/02/15142Genomicunknown
ss833570945ILLUMINA|Human660W-Quad_v1_H_rs4363506-131_B_F_1857579334fwd/BC/Ttaatagaaacattggttggactcataatgtttgcatcttctttgtatatt09/18/1307/02/15142Genomicunknown
ss834368117ILLUMINA|HumanOmni2.5-8v1_A_rs4363506-131_B_F_1865501480fwd/BC/Ttaatagaaacattggttggactcataatgtttgcatcttctttgtatatt09/18/1307/29/15142Genomicunknown
ss988051631EVA-GONL|EVA-GONL_rs4363506fwd/BC/Ttaatagaaacattggttggactcataatgtttgcatcttctttgtatatt04/23/1404/25/14142Genomicunknown
ss1077394214JMKIDD_LAB|HGDP_WGS_chr10_129274503fwd/BC/Ttaatagaaacattggttggactcataatgtttgcatcttctttgtatatt07/10/1407/12/14142Genomicunknown
ss13395538671000GENOMES|PHASE3_V1_52294282fwd/C/Ttaatagaaacattggttggactcataatgtttgcatcttctttgtatatt08/16/1408/16/14142Genomicunknown
ss1397596002HAMMER_LAB|HAMMER_LAB_rs4363506fwd/BC/Ttaatagaaacattggttggactcataatgtttgcatcttctttgtatatt09/30/1409/30/14146Genomicunknown
ss1426483503DDI|DDI_rs4363506fwd/BC/Ttaatagaaacattggttggactcataatgtttgcatcttctttgtatatt11/04/1411/04/14144Genomicunknown
ss1575431646EVA_GENOME_DK|EVA_GENOME_DK_snv_rs4363506fwd/BC/Ttaatagaaacattggttggactcataatgtttgcatcttctttgtatatt02/19/1502/19/15144Genomicunknown
ss1597732183EVA_DECODE|EVA_DECODE_10_129164493_988179_rs4363506fwd/BC/Ttaatagaaacattggttggactcataatgtttgcatcttctttgtatatt03/02/1503/04/15144Genomicunknown
ss1625701667EVA_UK10K_ALSPAC|EVA_UK10K_ALSPAC_10_129274503_28901343fwd/C/Ttaatagaaacattggttggactcataatgtttgcatcttctttgtatatt03/04/1503/04/15144Genomicunknown
ss1668695700EVA_UK10K_TWINSUK|EVA_UK10K_TWINSUK_10_129274503_28901343fwd/C/Ttaatagaaacattggttggactcataatgtttgcatcttctttgtatatt03/04/1503/04/15144Genomicunknown
ss1713221935EVA_SVP|EVA_SVP_916302fwd/BC/Ttaatagaaacattggttggactcataatgtttgcatcttctttgtatatt03/12/1503/12/15144Genomicunknown
ss1751954582ILLUMINA|OmniExpressExome-8v1-1_B_exm-rs4363506-131_B_F_1990483202fwd/BC/Ttaatagaaacattggttggactcataatgtttgcatcttctttgtatatt05/27/1506/09/15146Genomicunknown
ss1751954583ILLUMINA|OmniExpressExome-8v1-1_B_rs4363506-131_B_F_2087478900fwd/BC/Ttaatagaaacattggttggactcataatgtttgcatcttctttgtatatt05/27/1506/09/15146Genomicunknown
ss1806626299HAMMER_LAB|Hsieh_5645250fwd/BC/Ttaatagaaacattggttggactcataatgtttgcatcttctttgtatatt07/15/1507/16/15146Genomicunknown
ss1917852989ILLUMINA|HumanExome-12v1-1_B_exm-rs4363506-131_B_F_1990483202fwd/BC/Ttaatagaaacattggttggactcataatgtttgcatcttctttgtatatt10/16/1510/16/15147Genomicunknown
ss1931409054WEILL_CORNELL_DGM|SNV:chr10:129274503fwd/BC/Ttaatagaaacattggttggactcataatgtttgcatcttctttgtatatt10/16/1510/17/15147Genomicunknown
ss1946296625ILLUMINA|HumanCoreExome-12v1-0_C_exm-rs4363506-131_B_F_1990483202fwd/BC/Ttaatagaaacattggttggactcataatgtttgcatcttctttgtatatt10/29/1510/29/15147Genomicunknown
ss1959306403ILLUMINA|exm-rs4363506-131_B_F_1990483202fwd/BC/Ttaatagaaacattggttggactcataatgtttgcatcttctttgtatatt11/13/1511/13/15147Genomicunknown
ss1967255965GENOMED|rs4363506fwd/BC/Ttaatagaaacattggttggactcataatgtttgcatcttctttgtatatt02/16/1602/16/16147Genomicunknown
ss2026443746JJLAB|SNP6946301fwd/BC/Ttaatagaaacattggttggactcataatgtttgcatcttctttgtatatt08/29/1608/30/16149Genomicunknown
ss2154724024USC_VALOUEV|NC_000010.10:g.129274503T>Cfwd/C/Ttaatagaaacattggttggactcataatgtttgcatcttctttgtatatt11/17/1611/17/16150Genomicunknown
ss2179093030HUMAN_LONGEVITY|HLI-10-127476239-T-Cfwd/C/Ttaatagaaacattggttggactcataatgtttgcatcttctttgtatatt11/18/1611/18/16150Genomicunknown
ss2342212954TOPMED|10_129274503_T/Cfwd/C/Ttaatagaaacattggttggactcataatgtttgcatcttctttgtatatt11/19/1611/19/16150Genomicunknown
ss2627691071SYSTEMSBIOZJU|SYSTEMSBIOZJU_SNV4402456fwd/C/Ttaatagaaacattggttggactcataatgtttgcatcttctttgtatatt01/06/1701/06/17151Genomicunknown
ss2632780214ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_SoL-rs4363506-131_T_R_2131fwd/C/Ttaatagaaacattggttggactcataatgtttgcatcttctttgtatatt02/02/1702/02/17151Genomicunknown
ss2632780215ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_rs4363506-131_B_F_20874789fwd/C/Ttaatagaaacattggttggactcataatgtttgcatcttctttgtatatt02/02/1702/02/17151Genomicunknown
ss2698988012GRF|rs4363506fwd/C/Ttaatagaaacattggttggactcataatgtttgcatcttctttgtatatt02/13/1702/13/17151Genomicunknown
ss2894750333GNOMAD|rs4363506fwd/C/Ttaatagaaacattggttggactcataatgtttgcatcttctttgtatatt05/19/1705/19/17151Genomicunknown
ss2984927217AFFY|Axiom_PsorMich_Affx-2727318fwd/C/Ttaatagaaacattggttggactcataatgtttgcatcttctttgtatatt05/24/1705/24/17151Genomicunknown
ss3007347193SWEGEN|NC_000010.10:g.129274503T>Cfwd/C/Ttaatagaaacattggttggactcataatgtttgcatcttctttgtatatt05/30/1705/30/17151Genomicunknown
ss3021288317ILLUMINA|MEGA_Consortium_v2_15070954_A2_exm-rs4363506-131_B_F_1990483202fwd/C/Ttaatagaaacattggttggactcataatgtttgcatcttctttgtatatt06/28/1706/28/17151Genomicunknown
ss3027012913BIOINF_KMB_FNS_UNIBA|10.127476239T>Cfwd/C/Ttaatagaaacattggttggactcataatgtttgcatcttctttgtatatt07/05/1707/05/17151Genomicunknown
ss3133552358TOPMED|TOPMed_freeze_5?chr10:127,476,239fwd/C/Ttaatagaaacattggttggactcataatgtttgcatcttctttgtatatt09/29/1709/29/17151Genomicunknown
ss3349370269CSHL|rs4363506fwd/C/Ttaatagaaacattggttggactcataatgtttgcatcttctttgtatatt10/02/1710/02/17151Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs4363506|allelePos=415|totalLen=1182|taxid=9606|snpclass=1|alleles='C/T'|mol=Genomic|build=151
 TGGGAGTTTG ATAGGACTCA CTCACAAATC CATTTGGAAC AGGAAGTTTT TTAAATTTTA
 TTTTGAAAGT AGATCCTTGA TAGACATAAA ATTTTCTCTT TGGCTTGTTT GAGTTTTCAC
 TGTAAGAGCT CCTTGATATA TTTAAAATGA CTTTGGCTTA TTTGACTTTC AACCTCATTT
 TAAATTGATC TTGGTTTATT TATGCTTTCC TAGGAAAGGC ATGCATTTCA TTCAAACTTT
 AAAATGTCTT TTCAGAGAGT TGTTTATACC CTACCTTTAA AATTATTATA TTTGTGTCTA
 TATCCTTTTG TCATTCATAA TGATGTGCTT TTGTTGGAAA TAATTCTTCT TGATTAGATT
 TTCCAGAGAT TATCTTTTTA TTCTCTTTTT AATAGAAACA TTGGTTGGAC TCAT
 Y
 AATGTTTGCA TCTTCTTTGT ATATTCCAGT TCCATTATTT TCTCTTTTAT TTTGATTAAT
 TGTGTTATCA CAGCTTCCTC AGGTTTCTCT CTCTCTTTCT TAAGTCTTTG GTTGAAAGAT
 AAGCCTATTT TTAATTTTTT TGATTTAATA ATTAAAAAGC AAATGAGAGC GTGACCTCAT
 CTAAATAAGG TTTTTACATT TGAAGTTTCC AGTATCATTA TTGTATAAAT ACTCTGCAAT
 GGCAATTTGT TATTTTTTAA ATTGATAAAA GCTACATCCA TTTATCATGT ACAACGTGAT
 GTTTTGAAAT ATGTATACAT TGTGGAATGG CTAAATTGAG CTAATTAACA TATGCATTAC
 CTCACATACT GTTTCTCGGG GGTGAGAACA CAAAATCTAC TCTTTTAGCA ATTGTCAAGA
 ATATATTATT AAGCATAGTC ACCATTCTCT ACAATAGATC TGTGGAACTT ATTTCTCCTC
 ACTGAAATTT TGTACCCTTT GACCAACACC TCCCAATGCC CCCACCTCCA GCCCCTACTG
 ATCACCATTC AGCCCGCCAC TCTCATGACT TCACTTTTTT AGATTCCACT TTTAAGTGAG
 ATCATGTGGT ATTTGTCTTT CTGTGCTTGG CTATTTCATT TAACAAAATG TCCTCCTGGT
 TCATCCAGGT TGTCACAAAT GACAGGATTT CCTTCTTTTT GAGGCTGAAT AGTATTCCAT
 TATGTACATA TACTCCATTT TCTTTATATA TTCCTTTGTT TTTTTTT

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_008818.12
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) . See additional population frequency from 1000Genome [here] back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceC/C
C/T
T/T
HWPC
T
ss119325621YRI 2IG 1.00000000 0.500000000.50000000
ss132178030ENSEMBL_Watson 2IG 1.00000000 0.500000000.50000000
ss1339553867EAS 1008AF 0.591300010.40870002
EUR 1006AF 0.434400020.56559998
AFR 1322AF 0.369100000.63090003
AMR 694AF 0.518700000.48129997
SAS 978AF 0.482599970.51740003
ss142598263ENSEMBL_Venter 2IG1.00000000 1.00000000
ss15471381HapMap-CEUEuropean 224IG0.151785720.491071430.357142871.000000000.397321430.60267860
HapMap-HCBAsian 84IG0.285714300.523809550.190476190.751830000.547619040.45238096
HapMap-JPTAsian 172IG0.186046510.558139560.255813960.273322000.465116290.53488374
HapMap-YRISub-Saharan African 224IG0.107142860.473214300.419642870.654721000.343750000.65625000
HAPMAP-ASW 96IG0.104166660.520833310.375000000.402784000.364583340.63541669
HAPMAP-CHBAsian 80IG0.349999990.524999980.125000000.527089000.612500010.38749999
HAPMAP-CHD 166IG0.421686740.409638550.168674690.273322000.626506030.37349397
HAPMAP-GIH 176IG0.102272730.522727250.375000000.250592000.363636370.63636363
HAPMAP-LWK 180IG0.211111110.600000020.188888890.099721000.511111140.48888889
HAPMAP-MEX 100IG0.300000010.380000000.319999990.099721000.490000010.50999999
HAPMAP-MKK 286IG0.174825180.391608390.433566420.099721000.370629370.62937063
HAPMAP-TSI 172IG0.186046510.593023240.220930230.099721000.482558130.51744187
ss174810551PGP 2IG1.00000000 1.00000000
ss225010017pilot_1_YRI_low_coverage_panel 118AF 0.288135590.71186441
ss235383269pilot_1_CEU_low_coverage_panel 120AF 0.416666660.58333331
ss242051317pilot_1_CHB+JPT_low_coverage_panel 120AF 0.533333360.46666667
ss24595662AFD_EUR_PANELEuropean 48IG0.166666670.541666690.291666660.654721000.437500000.56250000
AFD_AFR_PANELAfrican American 46IG0.086956520.565217380.347826090.317310000.369565220.63043481
AFD_CHN_PANELAsian 48IG0.416666660.500000000.083333340.583882000.666666690.33333334
ss69095721HapMap-CEUEuropean 120IG0.083333340.483333320.433333340.438578000.324999990.67500001
HapMap-HCBAsian 90IG0.288888900.511111140.200000001.000000000.544444440.45555556
HapMap-JPTAsian 90IG0.200000000.577777800.222222220.317310000.488888890.51111114
HapMap-YRISub-Saharan African 120IG0.033333340.500000000.466666670.099721000.283333330.71666664

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
Additional Freq. Data
0.498+/-0.0300000ALFRED: The Allele Frequency Database

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqwith2hitWith1000GenomeData
DoubleHit found by:  BCM_SSAHASNPNCBI
UNKNOWNUNKNOWNUNKNOWN

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