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Reference SNP (refSNP) Cluster Report: rs4129933                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:108/151
Map to Genome Build:108/Weight 1
Validation Status:byClusterbyFreqwith2hitWith1000GenomeData
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:A/G/T (REV)
Allele Origin:
Ancestral Allele:G
Variation Viewer:link to VariationViewer
Clinical Significance:NA
MAF/MinorAlleleCount:A=0.4848/2428 (1000 Genomes)
A=0.4701/59024 (TOPMED)
HGVS Names
  • CM000678.2:g.11435037C>A
  • CM000678.2:g.11435037C>T
  • NC_000016.10:g.11435037C>A
  • NC_000016.10:g.11435037C>T
  • NC_000016.9:g.11528893C>A
  • XR_001752082.1:n.5690+625G>A
  • XR_001752082.1:n.5690+625G>T
  • XR_001752083.1:n.5690+625G>A
  • XR_001752083.1:n.5690+625G>T
Links , Linkout
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss282442806 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs4129933 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss5578998TSC-CSHL|TSC0069177fwd/BG/Tttggaggctgcagcgagctgtaagattgcacattgcagcccagcctgggcaatagtgaaa09/21/0210/10/03108Genomicunknown
ss5713619SC_JCM|NT_033288.2_488053rev/TA/Ctttcactattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcctccaa01/10/0310/10/03111Genomicunknown
ss21307777SSAHASNP|WGSA-200403-chr16.chr16.NT_010393.14_2841105byFreqrev/TA/Ctttcactattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcctccaa03/19/0410/21/04121Genomicunknown
ss24556145PERLEGEN|afd4159648byFreqrev/TA/Ctttcactattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcctccaa08/10/0409/13/04123Genomicunknown
ss40660942ABI|hCV470794rev/TA/Ctttcactattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcctccaa07/17/0507/17/05126Genomicunknown
ss66779872ILLUMINA|HumanHap300v1.1_rs4129933fwd/TG/Tttggaggctgcagcgagctgtaagattgcacattgcagcccagcctgggcaatagtgaaa11/09/0611/09/06127Genomicunknown
ss67315063ILLUMINA|HumanHap550v1.1_rs4129933fwd/BG/Tttggaggctgcagcgagctgtaagattgcacattgcagcccagcctgggcaatagtgaaa11/14/0611/14/06127Genomicunknown
ss67721351ILLUMINA|HumanHap650Yv1.0_rs4129933fwd/BG/Tttggaggctgcagcgagctgtaagattgcacattgcagcccagcctgggcaatagtgaaa11/14/0611/14/06127Genomicunknown
ss70793674ILLUMINA|HumanHap550v3.0__rs4129933rev/TA/Ctttcactattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcctccaa04/20/0703/30/08130Genomicunknown
ss71371486ILLUMINA|HumanHap650Yv3.0_rs4129933fwd/BG/Tttggaggctgcagcgagctgtaagattgcacattgcagcccagcctgggcaatagtgaaa04/23/0704/23/07127Genomicunknown
ss75778840ILLUMINA|ILMN_Human_1M_rs4129933fwd/BG/Tttggaggctgcagcgagctgtaagattgcacattgcagcccagcctgggcaatagtgaaa08/28/0708/29/07129Genomicunknown
ss77683242HGSV|Cor12156_SNV_20070510.chr16_11436394rev/TA/Ctttcactattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcctccaa10/09/0710/14/07129Genomicunknown
ss79175394ILLUMINA|HumanHap300v2.0_rs4129933fwd/BG/Tttggaggctgcagcgagctgtaagattgcacattgcagcccagcctgggcaatagtgaaa04/18/0711/18/07130Genomicunknown
ss84227368KRIBB_YJKIM|KHS662682fwd/BG/Tttggaggctgcagcgagctgtaagattgcacattgcagcccagcctgggcaatagtgaaa12/04/0712/06/07130Genomicunknown
ss96626133HUMANGENOME_JCVI|1103645426331rev/TA/Ctttcactattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcctccaa03/27/0803/27/08130Genomicunknown
ss103280134BGI|BGI_rs4129933rev/TA/Ctttcactattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcctccaa06/06/0806/18/09131Genomicunknown
ss1148611251000GENOMES|NA19240_2008_12_16_2925806_chr16_11436394rev/TA/Ctttcactattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcctccaa12/18/0812/18/08130Genomicunknown
ss118196417ILLUMINA-UK|NA18507_000022570_NCBI36.1_chr16_11436394rev/TA/Ctttcactattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcctccaa01/20/0901/20/09131Genomic99 %
ss122271283ILLUMINA|HumanCNV370v1_C_rs4129933fwd/BG/Tttggaggctgcagcgagctgtaagattgcacattgcagcccagcctgggcaatagtgaaa04/14/0904/15/09131Genomicunknown
ss136797740ENSEMBL|ENSSNP1175860rev/TA/Ctttcactattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcctccaa12/08/0810/15/09131Genomicunknown
ss154282308ILLUMINA|Human610_Quadv1_B_rs4129933-127_T_R_1501769676rev/TA/Ctttcactattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcctccaa06/18/0906/20/09131Genomicunknown
ss157109692GMI|GMI_SNP_39731918rev/TA/Ctttcactattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcctccaa06/24/0906/25/09131Genomicunknown
ss159459208ILLUMINA|Human660W-Quad_v1_A_rs4129933-128_T_R_1501769676rev/TA/Ctttcactattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcctccaa07/06/0907/07/09131Genomicunknown
ss160661960ILLUMINA|HumanOmni1-Quad_v1-0_B_rs4129933-128_T_R_1501769676rev/TA/Ctttcactattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcctccaa08/04/0910/04/09131Genomicunknown
ss167871328COMPLETE_GENOMICS|NA07022_36_chr16_11436394rev/TA/Ctttcactattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcctccaa09/30/0909/30/09132Genomicunknown
ss169196747COMPLETE_GENOMICS|NA19240_36_chr16_11436394rev/TA/Ctttcactattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcctccaa10/01/0910/01/09132Genomicunknown
ss170986609COMPLETE_GENOMICS|NA20431_36_chr16_11436394rev/TA/Ctttcactattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcctccaa10/01/0910/01/09132Genomicunknown
ss171740809ILLUMINA|HumanCNV370-Quadv3_C_rs4129933-127_T_R_1501769676rev/TA/Ctttcactattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcctccaa10/01/0910/04/09132Genomicunknown
ss173688161ILLUMINA|Human1M-Duov3_B_rs4129933-127_T_R_1501769676rev/TA/Ctttcactattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcctccaa10/01/0910/04/09132Genomicunknown
ss201459067BUSHMAN|BUSHMAN-chr16-11436393rev/TA/Ctttcactattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcctccaa02/16/1003/07/10132Genomicunknown
ss2271516221000GENOMES|pilot_1_YRI_8961305_chr16_11436394rev/A/Ctttcactattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcctccaa04/22/1004/22/10132Genomicunknown
ss2369593211000GENOMES|pilot_1_CEU_6563950_chr16_11436394rev/A/Ctttcactattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcctccaa05/01/1005/01/10132Genomicunknown
ss2433122561000GENOMES|pilot_1_CHB+JPT_5197333_chr16_11436394rev/A/Ctttcactattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcctccaa05/01/1005/01/10132Genomicunknown
ss255521334BL|SNP20404_16_11436394rev/TA/Ctttcactattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcctccaa08/20/1008/20/10134Genomicunknown
ss282442806GMI|GMI_AK_SNP_6763207rev/A/Ctttcactattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcctccaa12/16/1012/16/10137Genomicunknown
ss287037277GMI|GMI_NA10851_SNP_3050068rev/A/Ctttcactattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcctccaa12/17/1012/17/10138Genomicunknown
ss291921880PJP|SNP_1428238_chr16_11436394rev/A/Ctttcactattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcctccaa01/21/1101/21/11134Genomicunknown
ss480892210ILLUMINA|HumanOmni2.5-4v1_B_rs4129933-128_T_R_1767560961rev/TA/Cctattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcc01/30/1210/28/16137Genomicunknown
ss480911043ILLUMINA|HumanOmniExpress-12v1_C_rs4129933-131_T_R_1857540846rev/TA/Cctattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcc01/30/1210/27/16137Genomicunknown
ss481862453ILLUMINA|HumanOmni1-Quad_v1-0_C_rs4129933-131_T_R_1865440991rev/TA/Cctattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcc01/30/1208/28/15146Genomicunknown
ss485241142ILLUMINA|HumanOmni2.5-4v1_D_rs4129933-131_T_R_1857540846rev/TA/Cctattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcc01/30/1210/27/16137Genomicunknown
ss537215351ILLUMINA|HumanOmni5-4v1_B_rs4129933-131_T_R_1866549156rev/TA/Cctattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcc06/22/1208/29/15146Genomicunknown
ss564792063TISHKOFF|snp_chr16_11528893rev/TA/Cctattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcc11/22/1211/23/12138Genomicunknown
ss660536022SSMP|16_11528893rev/TA/Cctattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcc12/14/1202/13/15138Genomicunknown
ss778902593ILLUMINA|HumanOmni25Exome-8v1_A_rs4129933-131_T_R_1866549156rev/TA/Cctattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcc05/30/1307/10/15146Genomicunknown
ss783066505ILLUMINA|HumanOmni2.5-4v1_H_rs4129933-131_T_R_1857540846rev/TA/Cctattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcc05/30/1307/29/15142Genomicunknown
ss784024434ILLUMINA|HumanOmniExpressExome-8v1_A_rs4129933-131_T_R_1967904882rev/TA/Cctattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcc05/31/1306/18/15146Genomicunknown
ss825505912ILLUMINA|HumanCNV370v1_C_rs4129933-126_T_R_IFB1136808890:0rev/TA/Cctattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcc06/24/1311/21/14147Genomicunknown
ss832324560ILLUMINA|HumanOmniExpress-12v1_H_rs4129933-131_T_R_1857540846rev/TA/Cctattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcc09/17/1306/18/15144Genomicunknown
ss832970718ILLUMINA|Human660W-Quad_v1_C_rs4129933-131_T_R_1857540846rev/TA/Cctattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcc09/18/1307/02/15142Genomicunknown
ss833561547ILLUMINA|Human660W-Quad_v1_H_rs4129933-131_T_R_1857540846rev/TA/Cctattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcc09/18/1307/02/15142Genomicunknown
ss834363860ILLUMINA|HumanOmni2.5-8v1_A_rs4129933-131_T_R_1866549156rev/TA/Cctattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcc09/18/1307/29/15146Genomicunknown
ss992297665EVA-GONL|EVA-GONL_rs4129933rev/TA/Cctattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcc04/23/1404/30/14142Genomicunknown
ss1080498098JMKIDD_LAB|HGDP_WGS_chr16_11528893rev/TA/Cctattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcc07/10/1407/12/14142Genomicunknown
ss13554412871000GENOMES|PHASE3_V1_68849998rev/A/Cctattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcc08/16/1408/16/14142Genomicunknown
ss1427784004DDI|DDI_rs4129933rev/TA/Cctattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcc11/04/1411/04/14144Genomicunknown
ss1577842304EVA_GENOME_DK|EVA_GENOME_DK_snv_rs4129933rev/TA/Cctattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcc02/19/1502/19/15144Genomicunknown
ss1634041381EVA_UK10K_ALSPAC|EVA_UK10K_ALSPAC_16_11528893_38078335rev/A/Cctattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcc03/04/1503/04/15144Genomicunknown
ss1677035414EVA_UK10K_TWINSUK|EVA_UK10K_TWINSUK_16_11528893_38078335rev/A/Cctattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcc03/04/1503/04/15144Genomicunknown
ss1696333197EVA_DECODE|EVA_DECODE_16_11436394_127483_rs4129933rev/TA/Cctattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcc03/02/1503/04/15144Genomicunknown
ss1713527052EVA_SVP|EVA_SVP_1221419rev/TA/Cctattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcc03/12/1503/12/15144Genomicunknown
ss1752181831ILLUMINA|OmniExpressExome-8v1-1_B_rs4129933-131_T_R_1967904882rev/TA/Cctattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcc05/27/1506/09/15146Genomicunknown
ss1808429332HAMMER_LAB|Hsieh_7455295rev/TA/Cctattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcc07/15/1507/16/15146Genomicunknown
ss1935713957WEILL_CORNELL_DGM|SNV:chr16:11528893rev/TA/Cctattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcc10/16/1510/19/15147Genomicunknown
ss1968224358GENOMED|rs4129933rev/TA/Cctattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcc02/16/1602/16/16147Genomicunknown
ss2028643594JJLAB|SNP9146149rev/TA/Cctattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcc08/29/1608/31/16149Genomicunknown
ss2094799366ILLUMINA|Immuno_BeadChip_11419691_B_rs4129933-131_T_R_1866549156rev/TA/Cctattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcc09/27/1609/27/16150Genomicunknown
ss2095064444ILLUMINA|InfiniumImmunoArray-24v2-0_A_rs4129933-131_T_R_1866549156rev/TA/Cctattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcc09/27/1609/27/16150Genomicunknown
ss2157054811USC_VALOUEV|NC_000016.9:g.11528893C>Arev/A/Cctattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcc11/17/1611/17/16150Genomicunknown
ss2210739487HUMAN_LONGEVITY|HLI-16-11435037-C-Arev/A/Cctattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcc11/18/1611/18/16150Genomicunknown
ss2375386149TOPMED|16_11528893_C/Arev/A/Cctattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcc11/19/1611/19/16150Genomicunknown
ss2628816294SYSTEMSBIOZJU|SYSTEMSBIOZJU_SNV5834764rev/A/Cctattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcc01/06/1701/06/17151Genomicunknown
ss2633296805ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_rs4129933-131_T_R_19679048rev/A/Cctattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcc02/02/1702/02/17151Genomicunknown
ss2701550812GRF|rs4129933rev/A/Cctattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcc02/13/1702/13/17151Genomicunknown
ss2940462140GNOMAD|rs4129933rev/A/C/Tctattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcc05/23/1705/23/17151Genomicunknown
ss3014088089SWEGEN|NC_000016.9:g.11528893C>Arev/A/Cctattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcc05/30/1705/30/17151Genomicunknown
ss3028148056BIOINF_KMB_FNS_UNIBA|16.11435037C>Arev/A/Cctattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcc07/05/1707/05/17151Genomicunknown
ss3240409995TOPMED|TOPMed_freeze_5?chr16:11,435,037rev/A/Cctattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcc10/01/1710/01/17151Genomicunknown
ss3351344740CSHL|rs4129933rev/A/Cctattgcccaggctgggctgcaatgtgcaatcttacagctcgctgcagcc10/02/1710/02/17151Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs4129933|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='A/G/T'|mol=Genomic|build=151
 GTCAGCCCCA TTGGTGCCAC TGAGGGCATG AAAAGAGGGT GGTGTTCACT TCTTCACTTT
 GGCCCTTTGT TTCTTTTTTG CGTTGTTATG AGAGTGTTCG TTGTAGATGG CTTAAAGGAT
 AATGTATAAA GGGCTGGGCA CCTTGAGTCA TACCCCAGGG CTTTGGGAGG CTGAGGCAGG
 AGGATTGCTT GAGTTCAGGA GCTCAAGAGC AGCTTGCACA ATATAGCAAG ACCCCATCTC
 TCCAAAAAAT AAAAAAAATT AGCCAGGTGT GGTGGGGTGC ACCTGTAGTC CCAGCTACTC
 AGGAGGCTGA GGTGGGAGGA TTGCTTGAGC TCAGGAATTC AAGACCAGTC TGGACAACAT
 AGACCCCATC TGTACAGAAA ATTTTTAAAA AATAGCCAGA TGTGGTGGCA TGCACCTGTA
 GTCCCAGCTA CTTGGGAGGC TGAGGCGAGA GGATTGCTTG AGCTTGGGAG TTGGAGGCTG
 CAGCGAGCTG TAAGATTGCA
 D
 CATTGCAGCC CAGCCTGGGC AATAGTGAAA TGAGCCTGAC TCTAAAATAG TAATAATAAT
 AATCATGTAA AAAGGAATGA AATAAAAATC ACTAGTGATC CCAAGGAATG TGCGTCTCCG
 TCTGGTCTCA TGTCTGAGGA TATATTTACC TACTCATGTG TCCACTATGG TGGGGTGCTC
 AGGAGCCTAG GGTCCAGGGG TGACCACTTG GGTTCAAGTC CCAACTCGGC CACGGCTGCC
 TCTGGGACCA CTCGCCCTTC TGTGCCTCAG TTTCTCCACC TGCTTCTTAG GGTTGTCCTA
 ATGGTGAACT GAGCCCTGCA TTTGAATTCC AAGCCAGGGC CAGTGAGCAT GCTCAGTAGC
 TGGCTACCAT CTTTGCTGCA GGTGTAATCG GAAAAAACAA ACTCTTTTCT GCTGCTCTCC
 TCTTAATGCT CAGTACAGGA TAATTCTGTG GCCAGGAACA GGGGGTCTTT TTCCCCATCA
 AGCAGTTCTC TGGTGGACAC

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_033288.2 ABBA01006813
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) . See additional population frequency from 1000Genome [here] Note: rs4129933 allele is reverse to the genome back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceG
G/G
G/T
T
T/T
HWPG
T
ss118196417YRI 2IG 1.00000000 0.500000000.50000000
ss1355441287EAS 1008AF 0.601199980.39879999
EUR 1006AF 0.503000020.49700001
AFR 1322AF 0.474300000.52569997
AMR 694AF 0.641200010.35879999
SAS 978AF 0.404899980.59509999
ss136797740ENSEMBL_Venter 2IG 1.00000000 1.00000000
ss167871328CEUEuropean 2IG 1.00000000 1.00000000
ss169196747YRISub-Saharan African 2IG 1.00000000 0.500000000.50000000
ss170986609PGP 2IG 1.00000000 1.00000000
ss201459067BUSHMAN_POP2 2IG 1.00000000 0.500000000.50000000
ss21307777HapMap-CEUEuropean 226IG 0.238938050.56637168 0.194690270.200325000.522123870.47787610
HapMap-HCBAsian 84IG 0.547619040.35714287 0.095238100.527089000.726190450.27380952
HapMap-JPTAsian 170IG 0.341176480.50588238 0.152941180.654721000.594117640.40588236
HapMap-YRISub-Saharan African 118IG 0.203389820.55932206 0.237288130.371093000.483050850.51694918
CHMJAsian 74IG0.67567569 0.32432431 0.675675690.32432431
HAPMAP-ASW 98IG 0.224489790.48979592 0.285714301.000000000.469387770.53061223
HAPMAP-CHBAsian 82IG 0.365853670.48780489 0.146341461.000000000.609756110.39024389
HAPMAP-CHD 164IG 0.317073170.45121950 0.231707320.438578000.542682950.45731708
HAPMAP-GIH 176IG 0.068181820.45454547 0.477272720.402784000.295454530.70454544
HAPMAP-LWK 178IG 0.303370770.53932583 0.157303380.342782000.573033690.42696628
HAPMAP-MEX 100IG 0.440000000.50000000 0.060000000.250592000.690000000.31000000
HAPMAP-MKK 276IG 0.297101440.54347825 0.159420300.250592000.568840560.43115941
HAPMAP-TSI 176IG 0.250000000.45454547 0.295454530.438578000.477272720.52272725
ss227151622pilot_1_YRI_low_coverage_panel 118AF 0.398305090.60169494
ss236959321pilot_1_CEU_low_coverage_panel 120AF 0.516666650.48333332
ss243312256pilot_1_CHB+JPT_low_coverage_panel 120AF 0.683333340.31666666
ss24556145AFD_EUR_PANELEuropean 48IG 0.125000000.50000000 0.375000000.751830000.375000000.62500000
AFD_AFR_PANELAfrican American 46IG 0.391304340.47826087 0.130434781.000000000.630434810.36956522
AFD_CHN_PANELAsian 48IG 0.416666660.45833334 0.125000001.000000000.645833310.35416666
ss96626133J. Craig Venter 2IG 1.00000000 1.00000000

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
Additional Freq. Data
0.500+/-0.0150000ALFRED: The Allele Frequency Database

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqwith2hitWith1000GenomeData
DoubleHit found by:  BCM_SSAHASNPNCBI
UNKNOWNUNKNOWNUNKNOWN

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