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Reference SNP (refSNP) Cluster Report: rs3825776                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:107/151
Map to Genome Build:108/Weight 1
Validation Status:byClusterbyFreqwithHapMapFreqWith1000GenomeData
Citation:PubMedLitVarNEW
Association:NHGRI GWAS PheGenI
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:A/G (REV)
Allele Origin:
Ancestral Allele:A
Variation Viewer:link to VariationViewer
Clinical Significance:NA
MAF/MinorAlleleCount:C=0.4032/2019 (1000 Genomes)
C=0.3690/46338 (TOPMED)
HGVS Names
  • CM000677.2:g.58454631T>C
  • NC_000015.10:g.58454631T>C
  • NC_000015.9:g.58746830T>C
  • NG_011465.1:g.27656T>C
  • NM_000236.2:c.88+22511T>C
  • NR_120338.1:n.209-17719A>G
  • XR_243158.1:n.209-17719A>G
Links , Linkout
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss282276703 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs3825776 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss5012257YUSUKE|IMS-JST187020byFreqfwd/TA/Gcagaggccccaaccccacctgttgactagaaattgccatgcactgtggtcaccatgtggg08/12/0210/10/03107Genomicunknown
ss19320696CSHL-HAPMAP|CSHL-HuDD-200402.chr15.NT_010194.16_29537387rev/BC/Tcccacatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggcctctg02/20/0403/04/04120Genomicunknown
ss43688206ABI|hCV2041221byFreqrev/BC/Tcccacatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggcctctg07/18/0511/03/06126Genomicunknown
ss48295374SNP500CANCER|LIPC-02byFreqrev/BC/Tcccacatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggcctctg08/19/0511/03/06126Genomicunknown
ss66202405AFFY|SNP_A-2286747byFreqfwd/TA/Gccacctgttgactagaaattgccatgcactgt10/27/0603/31/08127Genomicunknown
ss66746778ILLUMINA|HumanHap300v1.1_rs3825776fwd/BA/Gcagaggccccaaccccacctgttgactagaaattgccatgcactgtggtcaccatgtggg11/09/0611/09/06127Genomicunknown
ss67307141ILLUMINA|HumanHap550v1.1_rs3825776fwd/TA/Gcagaggccccaaccccacctgttgactagaaattgccatgcactgtggtcaccatgtggg11/14/0611/14/06127Genomicunknown
ss67712401ILLUMINA|HumanHap650Yv1.0_rs3825776fwd/TA/Gcagaggccccaaccccacctgttgactagaaattgccatgcactgtggtcaccatgtggg11/14/0611/14/06127Genomicunknown
ss70785786ILLUMINA|HumanHap550v3.0__rs3825776rev/BC/Tcccacatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggcctctg04/20/0703/30/08130Genomicunknown
ss71362583ILLUMINA|HumanHap650Yv3.0_rs3825776fwd/TA/Gcagaggccccaaccccacctgttgactagaaattgccatgcactgtggtcaccatgtggg04/23/0704/23/07127Genomicunknown
ss75710128ILLUMINA|ILMN_Human_1M_rs3825776fwd/TA/Gcagaggccccaaccccacctgttgactagaaattgccatgcactgtggtcaccatgtggg08/28/0708/29/07129Genomicunknown
ss76291349AFFY|AFFY_6_1M_SNP_A-2286747fwd/TA/Gccacctgttgactagaaattgccatgcactgt08/28/0708/30/07129Genomicunknown
ss79170086ILLUMINA|HumanHap300v2.0_rs3825776fwd/TA/Gcagaggccccaaccccacctgttgactagaaattgccatgcactgtggtcaccatgtggg04/18/0711/18/07130Genomicunknown
ss81622933HGSV|Cor19240_SNV_20070510.chr15_56534122rev/BC/Tcccacatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggcctctg11/30/0712/01/07130Genomicunknown
ss84200487KRIBB_YJKIM|KHS656518fwd/TA/Gcagaggccccaaccccacctgttgactagaaattgccatgcactgtggtcaccatgtggg12/04/0712/06/07130Genomicunknown
ss103243624BGI|BGI_rs3825776rev/BC/Tcccacatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggcctctg06/05/0806/18/09131Genomicunknown
ss1088576041000GENOMES|CEU.trio.12.15.2008_3174143_chr15_56534122rev/BC/Tcccacatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggcctctg12/16/0812/16/08130Genomicunknown
ss1142451231000GENOMES|NA19240_2008_12_16_2848234_chr15_56534122rev/BC/Tcccacatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggcctctg12/18/0812/18/08130Genomicunknown
ss122239697ILLUMINA|HumanCNV370v1_C_rs3825776fwd/TA/Gcagaggccccaaccccacctgttgactagaaattgccatgcactgtggtcaccatgtggg04/14/0904/15/09131Genomicunknown
ss154273538ILLUMINA|Human610_Quadv1_B_rs3825776-128_B_R_1501765162rev/BC/Tcccacatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggcctctg06/18/0906/20/09131Genomicunknown
ss156602082GMI|GMI_SNP_35293278rev/BC/Tcccacatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggcctctg06/24/0906/25/09131Genomicunknown
ss159450265ILLUMINA|Human660W-Quad_v1_A_rs3825776-128_B_R_1501765162rev/BC/Tcccacatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggcctctg07/06/0907/07/09131Genomicunknown
ss160648501ILLUMINA|HumanOmni1-Quad_v1-0_B_rs3825776-128_B_R_1512133932rev/BC/Tcccacatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggcctctg08/04/0910/04/09131Genomicunknown
ss161724717ENSEMBL|ENSSNP1117264byFreqrev/BC/Tcccacatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggcctctg09/24/0903/07/10131Genomicunknown
ss169614983COMPLETE_GENOMICS|NA19240_36_chr15_56534122rev/BC/Tcccacatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggcctctg10/01/0910/01/09132Genomicunknown
ss171177368COMPLETE_GENOMICS|NA20431_36_chr15_56534122rev/BC/Tcccacatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggcctctg10/01/0910/01/09132Genomicunknown
ss171684914ILLUMINA|HumanCNV370-Quadv3_C_rs3825776-128_B_R_1501765162rev/BC/Tcccacatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggcctctg10/01/0910/04/09132Genomicunknown
ss173146936AFFY|GenomeWideSNP_5_SNP_A-2286747fwd/TA/Gccacctgttgactagaaattgccatgcactgt10/01/0910/03/09132Genomicunknown
ss173656685ILLUMINA|Human1M-Duov3_B_rs3825776-128_B_R_1501765162rev/BC/Tcccacatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggcctctg10/01/0910/04/09132Genomicunknown
ss200902856BUSHMAN|BUSHMAN-chr15-56534121rev/BC/Tcccacatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggcctctg02/16/1003/07/10132Genomicunknown
ss207388492BCM-HGSC-SUB|BCM_CMT_1011-2762369rev/BC/Tcccacatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggcctctg03/15/1003/18/10132Genomicunknown
ss209089387ILLUMINA|ALS_iSelect_272541_A_rs3825776-127_B_R_IFB1223195447rev/BC/Tcccacatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggcctctg03/24/1003/24/10132Genomicunknown
ss2269189211000GENOMES|pilot_1_YRI_8728604_chr15_56534122rev/C/Tcccacatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggcctctg04/22/1004/22/10132Genomicunknown
ss2367975641000GENOMES|pilot_1_CEU_6402193_chr15_56534122rev/C/Tcccacatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggcctctg05/01/1005/01/10132Genomicunknown
ss2431814671000GENOMES|pilot_1_CHB+JPT_5066544_chr15_56534122rev/C/Tcccacatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggcctctg05/01/1005/01/10132Genomicunknown
ss244297830ILLUMINA|CVDSNP55v1_A_rs3825776rev/BC/Tcccacatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggcctctg06/10/1006/10/10132Genomicunknown
ss255023651BL|SNP44001_15_56534122rev/BC/Tcccacatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggcctctg08/19/1008/20/10134Genomicunknown
ss282276703GMI|GMI_AK_SNP_6597102rev/C/Tcccacatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggcctctg12/16/1012/16/10137Genomicunknown
ss286962851GMI|GMI_NA10851_SNP_2975642rev/C/Tcccacatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggcctctg12/17/1012/17/10138Genomicunknown
ss480854352ILLUMINA|HumanOmni2.5-4v1_B_rs3825776-128_B_R_1615265742rev/BC/Tatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggc01/30/1210/28/16137Genomicunknown
ss480872326ILLUMINA|HumanOmniExpress-12v1_C_rs3825776-131_B_R_1859514210rev/BC/Tatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggc01/30/1210/27/16137Genomicunknown
ss481808663ILLUMINA|HumanOmni1-Quad_v1-0_C_rs3825776-131_B_R_1865592343rev/BC/Tatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggc01/30/1208/28/15146Genomicunknown
ss485222160ILLUMINA|HumanOmni2.5-4v1_D_rs3825776-131_B_R_1859514210rev/BC/Tatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggc01/30/1210/27/16137Genomicunknown
ss491495313EXOME_CHIP|.GWAS._211539_chr_15_58746830rev/BC/Tcccacatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggcctctg03/05/1203/05/12137Genomicunknown
ss537201355ILLUMINA|HumanOmni5-4v1_B_rs3825776-131_B_R_1908408552rev/BC/Tatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggc06/22/1208/29/15146Genomicunknown
ss564511074TISHKOFF|snp_chr15_58746830rev/BC/Tatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggc11/22/1211/23/12138Genomicunknown
ss660241187SSMP|15_58746830rev/BC/Tatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggc12/14/1202/13/15138Genomicunknown
ss778898543ILLUMINA|HumanOmni25Exome-8v1_A_rs3825776-131_B_R_1865592343rev/BC/Tatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggc05/30/1307/10/15146Genomicunknown
ss780684749ILLUMINA|HumanOmni25Exome-8v1_A_exm-rs3825776-131_B_R_1990482892rev/BC/Tatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggc05/30/1307/10/15142Genomicunknown
ss783057030ILLUMINA|HumanOmni2.5-4v1_H_rs3825776-131_B_R_1859514210rev/BC/Tatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggc05/30/1307/29/15146Genomicunknown
ss783358213ILLUMINA|HumanOmniExpressExome-8v1_A_exm-rs3825776-131_B_R_1990482892rev/BC/Tatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggc05/31/1306/18/15142Genomicunknown
ss784015255ILLUMINA|HumanOmniExpressExome-8v1_A_rs3825776-131_B_R_1908408552rev/BC/Tatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggc05/31/1306/18/15146Genomicunknown
ss825500604ILLUMINA|HumanCNV370v1_C_rs3825776-126_B_R_IFB1152711810:0rev/BC/Tatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggc06/24/1311/21/14144Genomicunknown
ss832314941ILLUMINA|HumanOmniExpress-12v1_H_rs3825776-131_B_R_1859514210rev/BC/Tatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggc09/17/1306/18/15146Genomicunknown
ss834359765ILLUMINA|HumanOmni2.5-8v1_A_rs3825776-131_B_R_1865592343rev/BC/Tatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggc09/18/1307/29/15146Genomicunknown
ss991838472EVA-GONL|EVA-GONL_rs3825776rev/BC/Tatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggc04/23/1404/30/14142Genomicunknown
ss1080166672JMKIDD_LAB|HGDP_WGS_chr15_58746830rev/BC/Tatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggc07/10/1407/12/14142Genomicunknown
ss13536643931000GENOMES|PHASE3_V1_67004966rev/C/Tatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggc08/16/1408/16/14142Genomicunknown
ss1397698612HAMMER_LAB|HAMMER_LAB_rs3825776rev/BC/Tatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggc09/30/1409/30/14146Genomicunknown
ss1427641717DDI|DDI_rs3825776rev/BC/Tatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggc11/04/1411/04/14144Genomicunknown
ss1577647783EVA_GENOME_DK|EVA_GENOME_DK_snv_rs3825776rev/BC/Tatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggc02/19/1502/19/15144Genomicunknown
ss1633104165EVA_UK10K_ALSPAC|EVA_UK10K_ALSPAC_15_58746830_37052911rev/C/Tatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggc03/04/1503/04/15144Genomicunknown
ss1676098198EVA_UK10K_TWINSUK|EVA_UK10K_TWINSUK_15_58746830_37052911rev/C/Tatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggc03/04/1503/04/15144Genomicunknown
ss1695858250EVA_DECODE|EVA_DECODE_15_56534122_272827_rs3825776rev/BC/Tatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggc03/02/1503/04/15144Genomicunknown
ss1713493776EVA_SVP|EVA_SVP_1188143rev/BC/Tatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggc03/12/1503/12/15144Genomicunknown
ss1752165568ILLUMINA|OmniExpressExome-8v1-1_B_exm-rs3825776-131_B_R_1990482892rev/BC/Tatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggc05/27/1506/09/15146Genomicunknown
ss1752165569ILLUMINA|OmniExpressExome-8v1-1_B_rs3825776-131_B_R_1908408552rev/BC/Tatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggc05/27/1506/09/15146Genomicunknown
ss1808226869HAMMER_LAB|Hsieh_7251975rev/BC/Tatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggc07/15/1507/16/15146Genomicunknown
ss1917897149ILLUMINA|HumanExome-12v1-1_B_exm-rs3825776-131_B_R_1990482892rev/BC/Tatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggc10/16/1510/16/15147Genomicunknown
ss1935244460WEILL_CORNELL_DGM|SNV:chr15:58746830rev/BC/Tatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggc10/16/1510/18/15147Genomicunknown
ss1946395165ILLUMINA|HumanCoreExome-12v1-0_C_exm-rs3825776-131_B_R_1990482892rev/BC/Tatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggc10/29/1510/29/15147Genomicunknown
ss1946395166ILLUMINA|HumanCoreExome-12v1-0_C_rs3825776-131_B_R_1908408552rev/BC/Tatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggc10/29/1510/29/15147Genomicunknown
ss1959616525ILLUMINA|exm-rs3825776-131_B_R_1990482892rev/BC/Tatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggc11/13/1511/13/15147Genomicunknown
ss1968121013GENOMED|rs3825776rev/BC/Tatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggc02/16/1602/16/16147Genomicunknown
ss2028402675JJLAB|SNP8905230rev/BC/Tatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggc08/29/1608/31/16149Genomicunknown
ss2156806512USC_VALOUEV|NC_000015.9:g.58746830T>Crev/C/Tatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggc11/17/1611/17/16150Genomicunknown
ss2207192622HUMAN_LONGEVITY|HLI-15-58454631-T-Crev/C/Tatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggc11/18/1611/18/16150Genomicunknown
ss2628695980SYSTEMSBIOZJU|SYSTEMSBIOZJU_SNV5689736rev/C/Tatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggc01/06/1701/06/17151Genomicunknown
ss2633235968ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_SoL-rs3825776-131_B_R_2131rev/C/Tatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggc02/02/1702/02/17151Genomicunknown
ss2633235969ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_rs3825776-131_B_R_19084085rev/C/Tatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggc02/02/1702/02/17151Genomicunknown
ss2701279263GRF|rs3825776rev/C/Tatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggc02/13/1702/13/17151Genomicunknown
ss2710817853ILLUMINA|Consortium-OncoArray_15047405_A_rs3825776-131_B_R_1908408552rev/C/Tatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggc03/22/1703/22/17151Genomicunknown
ss2935470437GNOMAD|rs3825776rev/C/Tatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggc05/23/1705/23/17151Genomicunknown
ss2985042940AFFY|Axiom_PsorMich_Affx-11768099rev/C/Tatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggc05/24/1705/24/17151Genomicunknown
ss3013364336SWEGEN|NC_000015.9:g.58746830T>Crev/C/Tatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggc05/30/1705/30/17151Genomicunknown
ss3021637653ILLUMINA|MEGA_Consortium_v2_15070954_A2_exm-rs3825776-131_B_R_1990482892rev/C/Tatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggc06/28/1706/28/17151Genomicunknown
ss3021637654ILLUMINA|MEGA_Consortium_v2_15070954_A2_rs3825776-138_B_R_2264360571rev/C/Tatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggc06/28/1706/28/17151Genomicunknown
ss3028025124BIOINF_KMB_FNS_UNIBA|15.58454631T>Crev/C/Tatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggc07/05/1707/05/17151Genomicunknown
ss3228936900TOPMED|TOPMed_freeze_5?chr15:58,454,631rev/C/Tatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggc10/01/1710/01/17151Genomicunknown
ss3351139154CSHL|rs3825776rev/C/Tatggtgaccacagtgcatggcaatttctagtcaacaggtggggttggggc10/02/1710/02/17151Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs3825776|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='A/G'|mol=Genomic|build=151
 TAAATACAGC CATCATGGCT GCTGTTAAGC TCCCACTGTG ATGTTACTGA TAACGGAGTT
 GGGAAGAGAT TCACTTTGGT GTATCATTGA ATAGTATTTC CACCACACAG TACGACAGAC
 GGAAATAACC TTACAGACAG AGACAATAGT AAAATGAGAA CAGAGGAGTT TTGAGTATTT
 ATTACTGTCA TTTTAAACAT TTGTTTCATT GTAAGTTCTA TAATGTAATT TTAAAATAAT
 GGCTATGTTT AAAAATCAGC TTGCAAAATT CTTGAAAATT TAGCAATTGG CTTTGTGAGA
 GGGTGAGGGC TTTCATCTTC CCTGGGGAAA ATATGATCCC AGCCCATGTG GGCGACACAT
 CTCACCAAAC CCCAGGCCCT GGGGGTGAGC GCTGCACGTG GTAAGGGCAT GGGAGGGTCT
 TGTGAGCATC AGAAGTCTTA AACTTGAAGA AAGAAGCCTC TTGTGTGTAG CAGAGGCCCC
 AACCCCACCT GTTGACTAGA
 R
 AATTGCCATG CACTGTGGTC ACCATGTGGG AGTAAAACCA TGAACTTCCA CCCACCATAG
 GCAGAAGTGA ATCATTCAGA CAGAGCCATC CAGAAGGCAC AGATGGCTTC CTGACCCCAT
 TTGACCTGGG CTGGGTACTC CATGGAGCTC AAGCTCAAGG TCAGCTCTGT CAGCCCCAAA
 CCCCAGCTTT CTGCTTTGGA AGTACCAGCT TATATCCCCA CCCTTTCCCC CAGCCCAGGA
 AGGGAGTAAA GCCAAAGGGG TTCCAGGGGA ACCTAAGACC TTGGCCTGGG AAGGTGATGG
 TTGGGACCCA TGTGACTGGG CATGACCAGA ACGAATTGGT GTTTTCCCTA AGGAAATCCC
 TTGCCCCAAA CTCTCCCCTG CCAGCTGCTC TGTGGCCTTG GAGACAAGCT ATTTCTCTGG
 TTATTTGCTC CAAGTTCACC CAGAGCTGGA AGACAAGTGT GGCTGAGGCA CCTGCATGAA
 ACAGCAGGGA GAGAACAGGT

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_010194
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) . See additional population frequency from 1000Genome [here] Note: rs3825776 allele is reverse to the genome back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceA/A
A/G
G/G
HWPA
G
ss1353664393EAS 1008AF 0.534699980.46529999
EUR 1006AF 0.662000000.33800003
AFR 1322AF 0.620999990.37900001
AMR 694AF 0.498600010.50139999
SAS 978AF 0.630900030.36910000
ss161724717ENSEMBL_celera 6IG0.66666669 0.33333334 0.666666690.33333334
ss169614983YRISub-Saharan African 2IG 1.00000000 0.500000000.50000000
ss171177368PGP 2IG 1.00000000 1.00000000
ss226918921pilot_1_YRI_low_coverage_panel 118AF 0.669491530.33050847
ss236797564pilot_1_CEU_low_coverage_panel 120AF 0.641666650.35833332
ss243181467pilot_1_CHB+JPT_low_coverage_panel 120AF 0.541666690.45833334
ss43688206HapMap-CEUEuropean 226IG0.398230080.513274310.088495570.150222000.654867230.34513274
HapMap-HCBAsian 86IG0.441860470.418604640.139534890.654721000.651162800.34883720
HapMap-JPTAsian 172IG0.151162790.604651150.244186040.050043000.453488380.54651165
HapMap-YRISub-Saharan African 226IG0.292035400.584070800.123893800.050043000.584070800.41592920
HAPMAP-ASW 98IG0.387755100.469387770.142857151.000000000.622448980.37755102
HAPMAP-CHBAsian 82IG0.195121940.463414640.341463420.751830000.426829280.57317072
HAPMAP-CHD 170IG0.200000000.529411790.270588250.583882000.464705880.53529412
HAPMAP-GIH 176IG0.431818190.431818190.136363640.654721000.647727250.35227272
HAPMAP-LWK 180IG0.244444440.500000000.255555571.000000000.494444430.50555557
HAPMAP-MEX 100IG0.180000010.479999990.340000001.000000000.419999990.57999998
HAPMAP-MKK 286IG0.195804190.489510480.314685311.000000000.440559450.55944055
HAPMAP-TSI 176IG0.454545470.420454530.125000000.654721000.664772750.33522728
ENSEMBL_Venter 2IG1.00000000 1.00000000
ss48295374P1 200AF0.389999990.410000000.200000000.150222000.595000030.40500000
CAUC1 60AF0.400000010.500000000.100000000.654721000.649999980.34999999
AFR1 48AF0.542000000.375000000.083000001.000000000.728999970.27100000
HISP1 46AF0.260999980.391000000.347999990.317310000.456999990.54299998
PAC1 46AF0.347999990.347999990.303999990.150222000.522000010.47799999
ss5012257JBIC-allele 748AF 0.549000020.45099998
ss66202405HapMap-CEUEuropean 118IG0.389830500.474576260.135593221.000000000.627118650.37288135
HapMap-HCBAsian 90IG0.400000010.466666670.133333341.000000000.633333330.36666667
HapMap-JPTAsian 90IG0.133333340.600000020.266666680.150222000.433333340.56666666
HapMap-YRISub-Saharan African 120IG0.333333340.583333310.083333340.099721000.625000000.37500000
ss76291349ICMHP 10IG0.800000010.20000000 0.899999980.10000000

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
Additional Freq. Data
0.481+/-0.0950000ALFRED: The Allele Frequency Database

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqwithHapMapFreqWith1000GenomeDataUNKNOWNUNKNOWNUNKNOWN

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