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Reference SNP (refSNP) Cluster Report: rs3741845                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:107/151
Map to Genome Build:108/Weight 1
Validation Status:byClusterbyFreqwith2hitWith1000GenomeData
Citation:PubMedLitVarNEW
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:C/T (REV)
Allele Origin:
Ancestral Allele:T
Variation Viewer:link to VariationViewer
Clinical Significance:NA
MAF/MinorAlleleCount:A=0.4036/48841 (ExAC)
A=0.4690/2349 (1000 Genomes)
G=0.4933/6416 (GO-ESP)
A=0.4883/61309 (TOPMED)
HGVS Names
  • CM000674.2:g.10809516A>G
  • NC_000012.11:g.10962115A>G
  • NC_000012.12:g.10809516A>G
  • NM_023917.2:c.560T>C
  • NP_076406.1:p.Val187Ala
  • NT_187658.1:g.8222A>G
  • NW_003571047.1:g.8222A>G
  • NW_003571050.1:g.8222A>G
Links , Linkout
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss281273525 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs3741845 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss4927851YUSUKE|IMS-JST092910byFreqfwd/BC/Tctttcaaacagttaaccctgaacctggggggatggttccctttatcctttgcctgatctc07/29/0210/10/03107Genomicunknown
ss5230369TSC-CSHL|TSC1111102byFreqrev/TA/Ggagatcaggcaaaggataaagggaaccatccccccaggttcagggttaactgtttgaaag09/20/0210/25/06108Genomicunknown
ss15816869SC_SNP|NT_009714.16_3721089rev/TA/Ggagatcaggcaaaggataaagggaaccatccccccaggttcagggttaactgtttgaaag11/17/0311/22/03120Genomicunknown
ss20943184SSAHASNP|WGSA-200403-chr12.chr12.NT_009714.16_3721089rev/TA/Ggagatcaggcaaaggataaagggaaccatccccccaggttcagggttaactgtttgaaag03/19/0403/19/04121Genomicunknown
ss23788021PERLEGEN|afd0897657byFreqrev/TA/Ggagatcaggcaaaggataaagggaaccatccccccaggttcagggttaactgtttgaaag08/10/0409/13/04123Genomicunknown
ss38943870ABI|hCV27492661rev/TA/Ggagatcaggcaaaggataaagggaaccatccccccaggttcagggttaactgtttgaaag07/16/0507/16/05126Genomicunknown
ss66681277ILLUMINA|HumanHap300v1.1_rs3741845fwd/BC/Tctttcaaacagttaaccctgaacctggggggatggttccctttatcctttgcctgatctc11/09/0611/09/06127Genomicunknown
ss67298497ILLUMINA|HumanHap550v1.1_rs3741845fwd/BC/Tctttcaaacagttaaccctgaacctggggggatggttccctttatcctttgcctgatctc11/14/0611/14/06127Genomicunknown
ss67703083ILLUMINA|HumanHap650Yv1.0_rs3741845fwd/BC/Tctttcaaacagttaaccctgaacctggggggatggttccctttatcctttgcctgatctc11/14/0611/14/06127Genomicunknown
ss69100729PERLEGEN|PGP00897657byFreqrev/TA/Ggagatcaggcaaaggataaagggaaccatccccccaggttcagggttaactgtttgaaag01/30/0703/31/08127Genomicunknown
ss70777128ILLUMINA|HumanHap550v3.0__rs3741845fwd/BC/Tctttcaaacagttaaccctgaacctggggggatggttccctttatcctttgcctgatctc04/20/0703/30/08130Genomicunknown
ss71353253ILLUMINA|HumanHap650Yv3.0_rs3741845fwd/BC/Tctttcaaacagttaaccctgaacctggggggatggttccctttatcctttgcctgatctc04/23/0704/23/07127Genomicunknown
ss74809224AFFY|SNP_M-181697fwd/BC/Tctttcaaacagttaaccctgaacctggggggatggttccctttatcctttgcctgatctc08/09/0708/09/07128Genomicunknown
ss75589987ILLUMINA|ILMN_Human_1M_rs3741845fwd/BC/Tctttcaaacagttaaccctgaacctggggggatggttccctttatcctttgcctgatctc08/28/0708/29/07129Genomicunknown
ss79163955ILLUMINA|HumanHap300v2.0_rs3741845fwd/BC/Tctttcaaacagttaaccctgaacctggggggatggttccctttatcctttgcctgatctc04/18/0711/18/07130Genomicunknown
ss84163451KRIBB_YJKIM|KHS648381fwd/BC/Tctttcaaacagttaaccctgaacctggggggatggttccctttatcctttgcctgatctc12/04/0712/06/07130Genomicunknown
ss84902635HGSV|Cor19240_SNV_20070510.chr12_10853382rev/TA/Ggagatcaggcaaaggataaagggaaccatccccccaggttcagggttaactgtttgaaag11/30/0712/08/07130Genomicunknown
ss97206094HUMANGENOME_JCVI|1103649366749rev/TA/Ggagatcaggcaaaggataaagggaaccatccccccaggttcagggttaactgtttgaaag03/28/0803/28/08130Genomicunknown
ss103023713BGI|BGI_rs3741845rev/TA/Ggagatcaggcaaaggataaagggaaccatccccccaggttcagggttaactgtttgaaag06/05/0810/21/09131Genomicunknown
ss1114799931000GENOMES|CEU.trio.12.15.2008_2676661_chr12_10853382rev/TA/Ggagatcaggcaaaggataaagggaaccatccccccaggttcagggttaactgtttgaaag12/17/0812/17/08130Genomicunknown
ss1131659141000GENOMES|NA19240_2008_12_16_2412016_chr12_10853382rev/TA/Ggagatcaggcaaaggataaagggaaccatccccccaggttcagggttaactgtttgaaag12/18/0812/18/08130Genomicunknown
ss122203521ILLUMINA|HumanCNV370v1_C_rs3741845fwd/BC/Tctttcaaacagttaaccctgaacctggggggatggttccctttatcctttgcctgatctc04/14/0904/15/09131Genomicunknown
ss137578714ENSEMBL|ENSSNP665811rev/TA/Ggagatcaggcaaaggataaagggaaccatccccccaggttcagggttaactgtttgaaag12/08/0810/15/09131Genomicunknown
ss154264290ILLUMINA|Human610_Quadv1_B_rs3741845-128_B_F_1501757257fwd/BC/Tctttcaaacagttaaccctgaacctggggggatggttccctttatcctttgcctgatctc06/18/0906/20/09131Genomicunknown
ss157108046GMI|GMI_SNP_31205086rev/TA/Ggagatcaggcaaaggataaagggaaccatccccccaggttcagggttaactgtttgaaag06/24/0906/25/09131Genomicunknown
ss159441133ILLUMINA|Human660W-Quad_v1_A_rs3741845-128_B_F_1501757257fwd/BC/Tctttcaaacagttaaccctgaacctggggggatggttccctttatcctttgcctgatctc07/06/0907/07/09131Genomicunknown
ss159725697SEATTLESEQ|TAS2R9-10853382rev/TA/Ggagatcaggcaaaggataaagggaaccatccccccaggttcagggttaactgtttgaaag07/10/0907/10/09131Genomicunknown
ss160634316ILLUMINA|HumanOmni1-Quad_v1-0_B_rs3741845-128_B_F_1501757257fwd/BC/Tctttcaaacagttaaccctgaacctggggggatggttccctttatcctttgcctgatctc08/04/0910/04/09131Genomicunknown
ss167784018COMPLETE_GENOMICS|NA07022_36_chr12_10853382rev/TA/Ggagatcaggcaaaggataaagggaaccatccccccaggttcagggttaactgtttgaaag09/30/0909/30/09132Genomicunknown
ss169060319COMPLETE_GENOMICS|NA19240_36_chr12_10853382rev/TA/Ggagatcaggcaaaggataaagggaaccatccccccaggttcagggttaactgtttgaaag10/01/0910/01/09132Genomicunknown
ss170397593COMPLETE_GENOMICS|NA20431_36_chr12_10853382rev/TA/Ggagatcaggcaaaggataaagggaaccatccccccaggttcagggttaactgtttgaaag10/01/0910/05/09132Genomicunknown
ss171619128ILLUMINA|HumanCNV370-Quadv3_C_rs3741845-128_B_F_1501757257fwd/BC/Tctttcaaacagttaaccctgaacctggggggatggttccctttatcctttgcctgatctc10/01/0910/04/09132Genomicunknown
ss173618281ILLUMINA|Human1M-Duov3_B_rs3741845-128_B_F_1501757257fwd/BC/Tctttcaaacagttaaccctgaacctggggggatggttccctttatcctttgcctgatctc10/01/0910/04/09132Genomicunknown
ss203545152BUSHMAN|BUSHMAN-chr12-10853381rev/TA/Ggagatcaggcaaaggataaagggaaccatccccccaggttcagggttaactgtttgaaag02/16/1003/09/10132Genomicunknown
ss208117330BCM-HGSC-SUB|BCM_CMT_1011-2329559rev/TA/Ggagatcaggcaaaggataaagggaaccatccccccaggttcagggttaactgtttgaaag03/15/1003/19/10132Genomicunknown
ss2256045831000GENOMES|pilot_1_YRI_7414266_chr12_10853382rev/A/Ggagatcaggcaaaggataaagggaaccatccccccaggttcagggttaactgtttgaaag04/22/1004/22/10132Genomicunknown
ss2358216751000GENOMES|pilot_1_CEU_5426304_chr12_10853382rev/A/Ggagatcaggcaaaggataaagggaaccatccccccaggttcagggttaactgtttgaaag05/01/1005/01/10132Genomicunknown
ss2424009841000GENOMES|pilot_1_CHB+JPT_4286061_chr12_10853382rev/A/Ggagatcaggcaaaggataaagggaaccatccccccaggttcagggttaactgtttgaaag05/01/1005/01/10132Genomicunknown
ss281273525GMI|GMI_AK_SNP_5593914rev/A/Ggagatcaggcaaaggataaagggaaccatccccccaggttcagggttaactgtttgaaag12/16/1012/16/10137Genomicunknown
ss286505522GMI|GMI_NA10851_SNP_2518313rev/A/Ggagatcaggcaaaggataaagggaaccatccccccaggttcagggttaactgtttgaaag12/17/1012/17/10138Genomicunknown
ss291379435PJP|SNP_885793_chr12_10853382rev/A/Ggagatcaggcaaaggataaagggaaccatccccccaggttcagggttaactgtttgaaag01/21/1101/21/11134Genomicunknown
ss342349871NHLBI-ESP|ESP2500-chr12-10962115byFreqrev/TA/Ggagatcaggcaaaggataaagggaaccatccccccaggttcagggttaactgtttgaaag03/25/1109/05/14134Genomicunknown
ss480808704ILLUMINA|HumanOmni2.5-4v1_B_rs3741845-128_B_F_1782874521rev/TA/Gcaggcaaaggataaagggaaccatccccccaggttcagggttaactgttt01/30/1210/28/16137Genomicunknown
ss480824407ILLUMINA|HumanOmniExpress-12v1_C_rs3741845-131_B_F_1857472376rev/TA/Gcaggcaaaggataaagggaaccatccccccaggttcagggttaactgttt01/30/1210/27/16137Genomicunknown
ss481752107ILLUMINA|HumanOmni1-Quad_v1-0_C_rs3741845-131_B_F_1857472376rev/TA/Gcaggcaaaggataaagggaaccatccccccaggttcagggttaactgttt01/30/1208/28/15146Genomicunknown
ss485199173ILLUMINA|HumanOmni2.5-4v1_D_rs3741845-131_B_F_1857472376rev/TA/Gcaggcaaaggataaagggaaccatccccccaggttcagggttaactgttt01/30/1210/27/16137Genomicunknown
ss4910370151000GENOMES|20110521_exome_544813_chr12_10962115rev/TA/Ggagatcaggcaaaggataaagggaaccatccccccaggttcagggttaactgtttgaaag02/10/1202/22/12137Genomicunknown
ss491464281EXOME_CHIP|nonsyn_180507_chr_12_10962115rev/TA/Ggagatcaggcaaaggataaagggaaccatccccccaggttcagggttaactgtttgaaag03/05/1203/05/12137Genomicunknown
ss491660586CLINSEQ_SNP|SNV-chr12-10853382byFreqrev/TA/Gcaggcaaaggataaagggaaccatccccccaggttcagggttaactgttt03/06/1209/05/14137Genomicunknown
ss537186514ILLUMINA|HumanOmni5-4v1_B_rs3741845-131_B_F_1894006990rev/TA/Gcaggcaaaggataaagggaaccatccccccaggttcagggttaactgttt06/22/1208/29/15146Genomicunknown
ss562991266TISHKOFF|snp_chr12_10962115rev/TA/Gcaggcaaaggataaagggaaccatccccccaggttcagggttaactgttt11/22/1211/23/12138Genomicunknown
ss658522863SSMP|12_10962115rev/TA/Gcaggcaaaggataaagggaaccatccccccaggttcagggttaactgttt12/14/1202/13/15138Genomicunknown
ss778521609ILLUMINA|HumanOmni25Exome-8v1_A_rs3741845-131_B_F_1857472376rev/TA/Gcaggcaaaggataaagggaaccatccccccaggttcagggttaactgttt05/30/1307/10/15146Genomicunknown
ss780908097ILLUMINA|HumanOmni25Exome-8v1_A_exm983981-0_B_R_1922590222rev/TA/Gcaggcaaaggataaagggaaccatccccccaggttcagggttaactgttt05/30/1307/10/15146Genomicunknown
ss783045591ILLUMINA|HumanOmni2.5-4v1_H_rs3741845-131_B_F_1857472376rev/TA/Gcaggcaaaggataaagggaaccatccccccaggttcagggttaactgttt05/30/1307/29/15146Genomicunknown
ss783595547ILLUMINA|HumanOmniExpressExome-8v1_A_exm983981-0_B_R_1922590222rev/TA/Gcaggcaaaggataaagggaaccatccccccaggttcagggttaactgttt05/31/1306/18/15146Genomicunknown
ss784004532ILLUMINA|HumanOmniExpressExome-8v1_A_rs3741845-131_B_F_1894006990rev/TA/Gcaggcaaaggataaagggaaccatccccccaggttcagggttaactgttt05/31/1306/18/15146Genomicunknown
ss825494473ILLUMINA|HumanCNV370v1_C_rs3741845-126_B_F_IFB1152237497:0rev/TA/Gcaggcaaaggataaagggaaccatccccccaggttcagggttaactgttt06/24/1311/21/14144Genomicunknown
ss832303370ILLUMINA|HumanOmniExpress-12v1_H_rs3741845-131_B_F_1857472376rev/TA/Gcaggcaaaggataaagggaaccatccccccaggttcagggttaactgttt09/17/1306/18/15146Genomicunknown
ss833978022ILLUMINA|HumanOmni2.5-8v1_A_rs3741845-131_B_F_1857472376rev/TA/Gcaggcaaaggataaagggaaccatccccccaggttcagggttaactgttt09/18/1307/29/15146Genomicunknown
ss974482656JMKIDD_LAB|KhoeSan_Exomes_chr12_10962115rev/TA/Gcaggcaaaggataaagggaaccatccccccaggttcagggttaactgttt03/06/1403/06/14142Genomicunknown
ss989235886EVA-GONL|EVA-GONL_rs3741845rev/TA/Gcaggcaaaggataaagggaaccatccccccaggttcagggttaactgttt04/23/1404/25/14142Genomicunknown
ss1067531682JMKIDD_LAB|HGDP_exomes_chr12_10962115rev/TA/Gcaggcaaaggataaagggaaccatccccccaggttcagggttaactgttt07/09/1407/09/14142Genomicunknown
ss1078245062JMKIDD_LAB|HGDP_WGS_chr12_10962115rev/TA/Gcaggcaaaggataaagggaaccatccccccaggttcagggttaactgttt07/10/1407/12/14142Genomicunknown
ss13439046561000GENOMES|PHASE3_V1_56820126rev/A/Gcaggcaaaggataaagggaaccatccccccaggttcagggttaactgttt08/16/1408/16/14142Genomicunknown
ss1397625619HAMMER_LAB|HAMMER_LAB_rs3741845rev/TA/Gcaggcaaaggataaagggaaccatccccccaggttcagggttaactgttt09/30/1407/15/15146Genomicunknown
ss1426843095DDI|DDI_rs3741845rev/TA/Gcaggcaaaggataaagggaaccatccccccaggttcagggttaactgttt11/04/1411/04/14144Genomicunknown
ss1576112013EVA_GENOME_DK|EVA_GENOME_DK_snv_rs3741845rev/TA/Gcaggcaaaggataaagggaaccatccccccaggttcagggttaactgttt02/19/1502/19/15144Genomicunknown
ss1584080336EVA_FINRISK|EVA_FINRISK_rs3741845rev/TA/Gcaggcaaaggataaagggaaccatccccccaggttcagggttaactgttt02/27/1502/27/15144Genomicunknown
ss1598905099EVA_DECODE|EVA_DECODE_12_10853382_84520_rs3741845rev/TA/Gcaggcaaaggataaagggaaccatccccccaggttcagggttaactgttt03/02/1503/04/15144Genomicunknown
ss1628008542EVA_UK10K_ALSPAC|EVA_UK10K_ALSPAC_12_10962115_31432865rev/A/Gcaggcaaaggataaagggaaccatccccccaggttcagggttaactgttt03/04/1503/04/15144Genomicunknown
ss1671002575EVA_UK10K_TWINSUK|EVA_UK10K_TWINSUK_12_10962115_31432865rev/A/Gcaggcaaaggataaagggaaccatccccccaggttcagggttaactgttt03/04/1503/04/15144Genomicunknown
ss1690793817EVA_EXAC|EVA_EXAC_6010874rev/A/Gcaggcaaaggataaagggaaccatccccccaggttcagggttaactgttt03/04/1503/04/15144Genomicunknown
ss1711321154EVA_MGP|EVA_XIMO_436914rev/TA/Gcaggcaaaggataaagggaaccatccccccaggttcagggttaactgttt03/09/1503/09/15144Genomicunknown
ss1713306739EVA_SVP|EVA_SVP_1001106rev/TA/Gcaggcaaaggataaagggaaccatccccccaggttcagggttaactgttt03/12/1503/12/15144Genomicunknown
ss1752045678ILLUMINA|OmniExpressExome-8v1-1_B_exm983981-0_B_R_1922590222rev/TA/Gcaggcaaaggataaagggaaccatccccccaggttcagggttaactgttt05/27/1506/09/15146Genomicunknown
ss1752045679ILLUMINA|OmniExpressExome-8v1-1_B_rs3741845-131_B_F_1894006990rev/TA/Gcaggcaaaggataaagggaaccatccccccaggttcagggttaactgttt05/27/1506/09/15146Genomicunknown
ss1807119227HAMMER_LAB|Hsieh_6140083rev/TA/Gcaggcaaaggataaagggaaccatccccccaggttcagggttaactgttt07/15/1507/16/15146Genomicunknown
ss1917870834ILLUMINA|HumanExome-12v1-1_B_exm983981-0_B_R_1922590222rev/TA/Gcaggcaaaggataaagggaaccatccccccaggttcagggttaactgttt10/16/1510/16/15147Genomicunknown
ss1932601392WEILL_CORNELL_DGM|SNV:chr12:10962115rev/TA/Gcaggcaaaggataaagggaaccatccccccaggttcagggttaactgttt10/16/1510/17/15147Genomicunknown
ss1959413231ILLUMINA|exm983981-0_B_R_1922590222rev/TA/Gcaggcaaaggataaagggaaccatccccccaggttcagggttaactgttt11/13/1511/13/15147Genomicunknown
ss1967522027GENOMED|rs3741845rev/TA/Gcaggcaaaggataaagggaaccatccccccaggttcagggttaactgttt02/16/1602/16/16147Genomicunknown
ss2027045144JJLAB|SNP7547699rev/TA/Gcaggcaaaggataaagggaaccatccccccaggttcagggttaactgttt08/29/1608/30/16149Genomicunknown
ss2155367990USC_VALOUEV|NC_000012.11:g.10962115A>Grev/A/Gcaggcaaaggataaagggaaccatccccccaggttcagggttaactgttt11/17/1611/17/16150Genomicunknown
ss2187760061HUMAN_LONGEVITY|HLI-12-10809516-A-Grev/A/Gcaggcaaaggataaagggaaccatccccccaggttcagggttaactgttt11/18/1611/18/16150Genomicunknown
ss2351396650TOPMED|12_10962115_A/Grev/A/Gcaggcaaaggataaagggaaccatccccccaggttcagggttaactgttt11/19/1611/19/16150Genomicunknown
ss2628001281SYSTEMSBIOZJU|SYSTEMSBIOZJU_SNV4795168rev/A/Gcaggcaaaggataaagggaaccatccccccaggttcagggttaactgttt01/06/1701/06/17151Genomicunknown
ss2632924718ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_rs3741845-131_B_F_18940069rev/A/Gcaggcaaaggataaagggaaccatccccccaggttcagggttaactgttt02/02/1702/02/17151Genomicunknown
ss2635033418ILLUMINA|Cancer_BeadChip_11459870_A_rs3741845-128_B_F_1782874521rev/A/Gcaggcaaaggataaagggaaccatccccccaggttcagggttaactgttt02/02/1702/02/17151Genomicunknown
ss2699693016GRF|rs3741845rev/A/Gcaggcaaaggataaagggaaccatccccccaggttcagggttaactgttt02/13/1702/13/17151Genomicunknown
ss2739637253GNOMAD|exomes_rs3741845rev/A/Gcaggcaaaggataaagggaaccatccccccaggttcagggttaactgttt05/17/1705/17/17151Genomicunknown
ss2748814664GNOMAD|coding_rs3741845rev/A/Gcaggcaaaggataaagggaaccatccccccaggttcagggttaactgttt05/17/1705/17/17151Genomicunknown
ss2907316986GNOMAD|rs3741845rev/A/Gcaggcaaaggataaagggaaccatccccccaggttcagggttaactgttt05/22/1705/22/17151Genomicunknown
ss2984967928AFFY|Axiom_PsorMich_Affx-6855774rev/A/Gcaggcaaaggataaagggaaccatccccccaggttcagggttaactgttt05/24/1705/24/17151Genomicunknown
ss3009201773SWEGEN|NC_000012.11:g.10962115A>Grev/A/Gcaggcaaaggataaagggaaccatccccccaggttcagggttaactgttt05/30/1705/30/17151Genomicunknown
ss3021405925ILLUMINA|MEGA_Consortium_v2_15070954_A2_exm983981-0_B_R_1922590222rev/A/Gcaggcaaaggataaagggaaccatccccccaggttcagggttaactgttt06/28/1706/28/17151Genomicunknown
ss3023067412EVA_SAMSUNG_MC|EXOMES.12:g10962115a>grev/A/Gcaggcaaaggataaagggaaccatccccccaggttcagggttaactgttt07/03/1707/03/17151Genomicunknown
ss3027327122BIOINF_KMB_FNS_UNIBA|12.10809516A>Grev/A/Gcaggcaaaggataaagggaaccatccccccaggttcagggttaactgttt07/05/1707/05/17151Genomicunknown
ss3162896757TOPMED|TOPMed_freeze_5?chr12:10,809,516rev/A/Gcaggcaaaggataaagggaaccatccccccaggttcagggttaactgttt09/30/1709/30/17151Genomicunknown
ss3349922366CSHL|rs3741845rev/A/Gcaggcaaaggataaagggaaccatccccccaggttcagggttaactgttt10/02/1710/02/17151Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs3741845|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='C/T'|mol=Genomic|build=151
 GATTTGGGGA AATGGATTCA TTGTACTAGT TAACTGCATT GACTGGCTCA AAAGAAGAGA
 TATTTCCTTG ATTGACATCA TCCTGATCAG CTTGGCCATC TCCAGAATCT GTCTGCTGTG
 TGTAATATCA TTAGATGGCT TCTTTATGCT GCTCTTTCCA GGTACATATG GCAATAGCGT
 GCTAGTAAGC ATTGTGAATG TTGTCTGGAC ATTTGCCAAT AATTCAAGTC TCTGGTTTAC
 TTCTTGCCTC AGTATCTTCT ATTTACTCAA GATAGCCAAT ATATCGCACC CATTTTTCTT
 CTGGCTGAAG CTAAAGATCA ACAAGGTCAT GCTTGCGATT CTTCTGGGGT CCTTTCTTAT
 CTCTTTAATT ATTAGTGTTC CAAAGAATGA TGATATGTGG TATCACCTTT TCAAAGTCAG
 TCATGAAGAA AACATTACTT GGAAATTCAA AGTGAGTAAA ATTCCAGGTA CTTTCAAACA
 GTTAACCCTG AACCTGGGGG
 Y
 GATGGTTCCC TTTATCCTTT GCCTGATCTC ATTTTTCTTG TTACTTTTCT CCCTAGTTAG
 ACACACCAAG CAGATTCGAC TGCATGCTAC AGGGTTCAGA GACCCCAGTA CAGAGGCCCA
 CATGAGGGCC ATAAAGGCAG TGATCATCTT TCTGCTCCTC CTCATCGTGT ACTACCCAGT
 CTTTCTTGTT ATGACCTCTA GCGCTCTGAT TCCTCAGGGA AAATTAGTGT TGATGATTGG
 TGACATAGTA ACTGTCATTT TCCCATCAAG CCATTCATTC ATTCTAATTA TGGGAAATAG
 CAAGTTGAGG GAAGCTTTTC TGAAGATGTT AAGATTTGTG AAGTGTTTCC TTAGAAGAAG
 AAAGCCTTTT GTTCCATAGA GACCCCTAAA GAGTATCCTG ACTACAAGGA TGAAAGAAAT
 CAACAAAAGG CATTCTCCCT TCTCTTGTTT GCATTCATTT TCTCTTATAT GCTATTGGAA
 GTCATTAATA TCTGTCATGA

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_009714 ABBA01067807
dbSNP Blast Analysis
UniGene Cluster ID
272391

  Population Diversity (Alleles in RefSNP orientation) . See additional population frequency from 1000Genome [here] Note: rs3741845 allele is reverse to the genome back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceC
C/C
C/T
N
T
T/T
HWPC
N
T
ss1343904656EAS 1008AF 0.71829998 0.28170002
EUR 1006AF 0.68390000 0.31610000
AFR 1322AF 0.19819999 0.80180001
AMR 694AF 0.57489997 0.42510000
SAS 978AF 0.59919995 0.40079999
ss137578714ENSEMBL_Venter 2IG 1.00000000 1.00000000
ENSEMBL_celera 2IG 1.00000000 1.00000000
ss167784018CEUEuropean 2IG 1.00000000 1.00000000
ss169060319YRISub-Saharan African 2IG 1.00000000 0.50000000 0.50000000
ss1690793817ExAc_Aggregated_Populations121378AF 0.59575868 0.40424129
ss170397593PGP 2IG 1.00000000 0.50000000 0.50000000
ss203545152BUSHMAN_POP2 2IG 1.00000000 0.50000000 0.50000000
ss225604583pilot_1_YRI_low_coverage_panel 118AF 0.16949153 0.83050847
ss235821675pilot_1_CEU_low_coverage_panel 120AF 0.63333333 0.36666667
ss23788021AFD_EUR_PANELEuropean 44IG 0.363636370.59090906 0.045454550.150222000.65909094 0.34090909
AFD_AFR_PANELAfrican American 34IG 0.058823530.58823532 0.352941190.250592000.35294119 0.64705884
AFD_CHN_PANELAsian 46IG 0.478260870.52173913 0.273322000.73913044 0.26086956
ss242400984pilot_1_CHB+JPT_low_coverage_panel 120AF 0.74166667 0.25833333
ss342349871ESP_Cohort_Populations 4474GF 0.250782310.43674564 0.312472080.001000000.46915513 0.53084487
ss491660586CSAgilent 1321GF 0.386999990.49000001 0.123000000.200325000.63199997 0.36800000
ss4927851JBIC-allele 722AF 0.72500002 0.27500001
ss5230369HapMap-CEUEuropean 220IG 0.381818180.49090910 0.127272730.654721000.62727273 0.37272727
HapMap-HCBAsian 84IG 0.476190480.45238096 0.071428570.654721000.70238096 0.29761904
HapMap-JPTAsian 88IG 0.545454560.43181819 0.022727270.250592000.76136363 0.23863636
HapMap-YRISub-Saharan African 224IG 0.044642860.35714287 0.598214270.751830000.22321428 0.77678573
CHMJAsian 74IG0.58108109 0.175675680.24324325 0.581081090.175675680.24324325
HAPMAP-ASW 96IG 0.062500000.50000000 0.437500000.273322000.31250000 0.68750000
HAPMAP-CHBAsian 76IG 0.342105270.52631581 0.131578950.583882000.60526317 0.39473686
HAPMAP-CHD 170IG 0.576470610.35294119 0.070588240.654721000.75294119 0.24705882
HAPMAP-GIH 176IG 0.329545470.54545456 0.125000000.200325000.60227275 0.39772728
HAPMAP-LWK 178IG 0.011235960.38202247 0.606741550.099721000.20224719 0.79775280
HAPMAP-MEX 100IG 0.440000000.46000001 0.100000001.000000000.67000002 0.33000001
HAPMAP-MKK 284IG 0.140845080.43661973 0.422535210.583882000.35915494 0.64084506
HAPMAP-TSI 174IG 0.517241360.42528737 0.057471260.479500000.72988504 0.27011493
ss69100729HapMap-CEUEuropean 120IG 0.433333340.40000001 0.166666670.294266000.63333333 0.36666667
HapMap-HCBAsian 90IG 0.533333360.40000001 0.066666671.000000000.73333335 0.26666668
HapMap-JPTAsian 90IG 0.555555580.42222223 0.022222220.250592000.76666665 0.23333333
HapMap-YRISub-Saharan African 120IG 0.066666670.31666666 0.616666670.479500000.22499999 0.77499998
ss97206094J. Craig Venter 2IG 1.00000000 1.00000000

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
Additional Freq. Data
0.481+/-0.0950000ALFRED: The Allele Frequency Database

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqwith2hitWith1000GenomeData
DoubleHit found by:  BCM_SSAHASNP
UNKNOWNUNKNOWNUNKNOWN

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