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Reference SNP (refSNP) Cluster Report: rs294636                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:79/151
Map to Genome Build:108/Weight 1
Validation Status:byClusterbyFreqwith2hitwithHapMapFreqWith1000GenomeData
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:A/C (REV)
Allele Origin:
Ancestral Allele:A
Variation Viewer:link to VariationViewer
Clinical Significance:NA
MAF/MinorAlleleCount:G=0.1134/568 (1000 Genomes)
G=0.1445/18141 (TOPMED)
HGVS Names
  • CM000665.2:g.14858271G>T
  • NC_000003.11:g.14899778G>T
  • NC_000003.12:g.14858271G>T
  • NM_001320276.1:c.2526-5857G>T
  • NM_152536.3:c.2526-5857G>T
Links , Linkout
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss277024074 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs294636 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss381160KWOK|OVLP-000621-193308fwd/TA/Cccatccttccatctactcactcagccatcctccttctcacccatcccctcacactcactc06/30/0010/10/0379Genomic99 %
ss1129522KWOK|OVLP-000804-357510fwd/TA/Cccatccttccatctactcactcagccatcctccttctcacccatcccctcacactcactc09/02/0010/10/0386Genomic99 %
ss2517606SC_JCM|AC024545.3_100209fwd/TA/Cccatccttccatctactcactcagccatcctccttctcacccatcccctcacactcactc11/03/0010/10/0392Genomicunknown
ss3720332SC_JCM|AC025163.16_95967fwd/TA/Cccatccttccatctactcactcagccatcctccttctcacccatcccctcacactcactc09/25/0110/10/03100Genomicunknown
ss10085266BCM_SSAHASNP|chr3.NT_005927.15_14828631rev/BG/Tgagtgagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaaggatgg06/27/0310/10/03116Genomicunknown
ss14203304BCM_SSAHASNP|chr3.NT_022517.16_14839782byFreqrev/BG/Tgagtgagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaaggatgg11/05/0310/25/06119Genomicunknown
ss16962517CSHL-HAPMAP|CSHL-HuAA-200402.chr3.NT_022517.16_14839782rev/BG/Tgagtgagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaaggatgg02/17/0403/04/04120Genomicunknown
ss22030639SSAHASNP|WGSA-200403-chr3.chr3.NT_022517.16_14839782rev/BG/Tgagtgagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaaggatgg03/20/0403/20/04121Genomicunknown
ss41852720ABI|hCV521851rev/BG/Tgagtgagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaaggatgg07/17/0507/17/05126Genomicunknown
ss66615500ILLUMINA|HumanHap300v1.1_rs294636fwd/BA/Cccatccttccatctactcactcagccatcctccttctcacccatcccctcacactcactc11/09/0611/09/06127Genomicunknown
ss67284560ILLUMINA|HumanHap550v1.1_rs294636fwd/TA/Cccatccttccatctactcactcagccatcctccttctcacccatcccctcacactcactc11/14/0611/14/06127Genomicunknown
ss67687163ILLUMINA|HumanHap650Yv1.0_rs294636fwd/TA/Cccatccttccatctactcactcagccatcctccttctcacccatcccctcacactcactc11/14/0611/14/06127Genomicunknown
ss70763093ILLUMINA|HumanHap550v3.0__rs294636rev/BG/Tgagtgagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaaggatgg04/20/0703/30/08130Genomicunknown
ss71337245ILLUMINA|HumanHap650Yv3.0_rs294636fwd/TA/Cccatccttccatctactcactcagccatcctccttctcacccatcccctcacactcactc04/23/0704/23/07127Genomicunknown
ss75470545ILLUMINA|ILMN_Human_1M_rs294636fwd/TA/Cccatccttccatctactcactcagccatcctccttctcacccatcccctcacactcactc08/28/0708/29/07129Genomicunknown
ss78975967HGSV|Cor18507_SNV_20070510.chr3_14874782rev/BG/Tgagtgagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaaggatgg10/19/0710/21/07129Genomicunknown
ss79154686ILLUMINA|HumanHap300v2.0_rs294636fwd/TA/Cccatccttccatctactcactcagccatcctccttctcacccatcccctcacactcactc04/18/0711/18/07130Genomicunknown
ss83416935KRIBB_YJKIM|KHS456643fwd/TA/Cccatccttccatctactcactcagccatcctccttctcacccatcccctcacactcactc12/04/0712/05/07130Genomicunknown
ss83709863HGSV|Cor19240_SNV_20070510.chr3_14874782rev/BG/Tgagtgagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaaggatgg11/30/0712/05/07130Genomicunknown
ss85407195HGSV|Cor19129_SNV_20070510.chr3_14874782rev/BG/Tgagtgagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaaggatgg12/06/0712/09/07130Genomicunknown
ss85531512HGSV|Cor18517_SNV_20070510.chr3_14874782rev/BG/Tgagtgagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaaggatgg12/06/0712/09/07130Genomicunknown
ss99077458HUMANGENOME_JCVI|1103656031404rev/BG/Tgagtgagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaaggatgg04/02/0804/02/08130Genomicunknown
ss106243502BGI|BGI_rs294636rev/BG/Tgagtgagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaaggatgg09/13/0806/18/09130Genomicunknown
ss1113007321000GENOMES|CEU.trio.12.15.2008_649412_chr3_14874782rev/BG/Tgagtgagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaaggatgg12/17/0812/17/08130Genomicunknown
ss1121240761000GENOMES|NA19240_2008_12_16_582570_chr3_14874782rev/BG/Tgagtgagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaaggatgg12/17/0812/17/08130Genomicunknown
ss116986271ILLUMINA-UK|NA18507_000026597_NCBI36.1_chr3_14874782rev/BG/Tgagtgagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaaggatgg01/18/0901/18/09130Genomic99 %
ss122148417ILLUMINA|HumanCNV370v1_C_rs294636fwd/TA/Cccatccttccatctactcactcagccatcctccttctcacccatcccctcacactcactc04/14/0904/15/09131Genomicunknown
ss135474510ENSEMBL|ENSSNP2059914rev/BG/Tgagtgagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaaggatgg12/08/0810/14/09131Genomicunknown
ss154247691ILLUMINA|Human610_Quadv1_B_rs294636-127_B_R_1501748933rev/BG/Tgagtgagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaaggatgg06/18/0906/20/09131Genomicunknown
ss155139175GMI|GMI_SNP_27125565rev/BG/Tgagtgagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaaggatgg06/24/0906/24/09131Genomicunknown
ss159424572ILLUMINA|Human660W-Quad_v1_A_rs294636-128_B_R_1501748933rev/BG/Tgagtgagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaaggatgg07/06/0907/07/09131Genomicunknown
ss161931487COMPLETE_GENOMICS|NA07022_36_chr3_14874782rev/BG/Tgagtgagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaaggatgg09/28/0909/28/09132Genomicunknown
ss163144324COMPLETE_GENOMICS|NA19240_36_chr3_14874782rev/BG/Tgagtgagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaaggatgg09/29/0909/29/09132Genomicunknown
ss166204618COMPLETE_GENOMICS|NA20431_36_chr3_14874782rev/BG/Tgagtgagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaaggatgg09/30/0909/30/09132Genomicunknown
ss171492708ILLUMINA|HumanCNV370-Quadv3_C_rs294636-127_B_R_1501748933rev/BG/Tgagtgagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaaggatgg10/01/0910/04/09132Genomicunknown
ss173538304ILLUMINA|Human1M-Duov3_B_rs294636-127_B_R_1501748933rev/BG/Tgagtgagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaaggatgg10/01/0910/04/09132Genomicunknown
ss202173879BUSHMAN|BUSHMAN-chr3-14874781rev/BG/Tgagtgagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaaggatgg02/16/1003/08/10132Genomicunknown
ss206019079BCM-HGSC-SUB|BCM_CMT_1011-570292rev/BG/Tgagtgagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaaggatgg03/15/1003/17/10132Genomicunknown
ss2199958341000GENOMES|pilot_1_YRI_1805517_chr3_14874782rev/G/Tgagtgagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaaggatgg04/22/1004/22/10132Genomicunknown
ss2317187661000GENOMES|pilot_1_CEU_1323395_chr3_14874782rev/G/Tgagtgagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaaggatgg05/01/1005/01/10132Genomicunknown
ss2391510511000GENOMES|pilot_1_CHB+JPT_1036128_chr3_14874782rev/G/Tgagtgagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaaggatgg05/01/1005/01/10132Genomicunknown
ss252949684BL|SNP21700_3_14874782rev/BG/Tgagtgagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaaggatgg08/18/1008/18/10134Genomicunknown
ss277024074GMI|GMI_AK_SNP_1344283rev/G/Tgagtgagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaaggatgg12/16/1012/16/10137Genomicunknown
ss284600267GMI|GMI_NA10851_SNP_613038rev/G/Tgagtgagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaaggatgg12/17/1012/17/10138Genomicunknown
ss292937786PJP|SNP_2444144_chr3_14874782rev/G/Tgagtgagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaaggatgg01/21/1101/21/11134Genomicunknown
ss491336135EXOME_CHIP|.GWAS._52362_chr_3_14899778rev/BG/Tgagtgagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaaggatgg03/05/1203/05/12137Genomicunknown
ss536284556ILLUMINA|HumanOmni5-4v1_B_kgp8458691-0_B_F_1800625432rev/BG/Tagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaag06/22/1208/28/15146Genomicunknown
ss537151351ILLUMINA|HumanOmni5-4v1_B_rs294636-131_B_R_1885470290rev/BG/Tagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaag06/22/1208/28/15146Genomicunknown
ss556444045TISHKOFF|snp_chr3_14899778rev/BG/Tagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaag11/22/1211/23/12138Genomicunknown
ss650111268SSMP|3_14899778rev/BG/Tagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaag12/14/1202/10/15138Genomicunknown
ss780684107ILLUMINA|HumanOmni25Exome-8v1_A_exm-rs294636-131_B_R_1990482157rev/BG/Tagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaag05/30/1307/09/15146Genomicunknown
ss783357537ILLUMINA|HumanOmniExpressExome-8v1_A_exm-rs294636-131_B_R_1990482157rev/BG/Tagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaag05/31/1306/19/15146Genomicunknown
ss825485204ILLUMINA|HumanCNV370v1_C_rs294636-126_B_R_IFB1135306912:0rev/BG/Tagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaag06/24/1311/21/14144Genomicunknown
ss832936206ILLUMINA|Human660W-Quad_v1_C_rs294636-131_B_R_1864022913rev/BG/Tagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaag09/18/1307/02/15142Genomicunknown
ss833527036ILLUMINA|Human660W-Quad_v1_H_rs294636-131_B_R_1864022913rev/BG/Tagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaag09/18/1307/02/15142Genomicunknown
ss978300606EVA-GONL|EVA-GONL_rs294636rev/BG/Tagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaag04/23/1404/23/14142Genomicunknown
ss1070195622JMKIDD_LAB|HGDP_WGS_chr3_14899778rev/BG/Tagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaag07/10/1407/10/14142Genomicunknown
ss13029109211000GENOMES|PHASE3_V1_14131408rev/G/Tagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaag08/16/1408/16/14142Genomicunknown
ss1429339098DDI|DDI_rs294636rev/BG/Tagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaag11/04/1411/04/14144Genomicunknown
ss1579856056EVA_GENOME_DK|EVA_GENOME_DK_snv_rs294636rev/BG/Tagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaag02/19/1502/20/15144Genomicunknown
ss1606473426EVA_UK10K_ALSPAC|EVA_UK10K_ALSPAC_3_14899778_7795902rev/G/Tagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaag03/04/1503/04/15144Genomicunknown
ss1649467459EVA_UK10K_TWINSUK|EVA_UK10K_TWINSUK_3_14899778_7795902rev/G/Tagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaag03/04/1503/04/15144Genomicunknown
ss1712556075EVA_SVP|EVA_SVP_250620rev/BG/Tagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaag03/12/1503/12/15144Genomicunknown
ss1752446113ILLUMINA|OmniExpressExome-8v1-1_B_exm-rs294636-131_B_R_1990482157rev/BG/Tagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaag05/27/1506/09/15146Genomicunknown
ss1798904852HAMMER_LAB|Hsieh_1498574rev/BG/Tagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaag07/15/1507/15/15146Genomicunknown
ss1917763774ILLUMINA|HumanExome-12v1-1_B_exm-rs294636-131_B_R_1990482157rev/BG/Tagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaag10/16/1510/16/15147Genomicunknown
ss1921553029WEILL_CORNELL_DGM|SNV:chr3:14899778rev/BG/Tagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaag10/16/1510/17/15147Genomicunknown
ss1946075541ILLUMINA|HumanCoreExome-12v1-0_C_exm-rs294636-131_B_R_1990482157rev/BG/Tagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaag10/29/1510/29/15147Genomicunknown
ss1958540336ILLUMINA|exm-rs294636-131_B_R_1990482157rev/BG/Tagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaag11/13/1511/13/15147Genomicunknown
ss1966655280AMU|chr3_14899778rev/BG/Tagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaag01/29/1601/29/16147Genomicunknown
ss1969330090GENOMED|rs294636rev/BG/Tagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaag02/16/1602/16/16147Genomicunknown
ss2021330447JJLAB|SNP1833002rev/BG/Tagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaag08/29/1608/30/16149Genomicunknown
ss2149398509USC_VALOUEV|NC_000003.11:g.14899778G>Trev/G/Tagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaag11/17/1611/17/16150Genomicunknown
ss2249293732HUMAN_LONGEVITY|HLI-3-14858271-G-Trev/G/Tagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaag11/18/1611/18/16150Genomicunknown
ss2416338993TOPMED|3_14899778_G/Trev/G/Tagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaag11/19/1611/19/16150Genomicunknown
ss2625165082SYSTEMSBIOZJU|SYSTEMSBIOZJU_SNV1148735rev/G/Tagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaag01/06/1701/06/17151Genomicunknown
ss2633915659ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_rs294636-131_B_R_188547029rev/G/Tagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaag02/02/1702/02/17151Genomicunknown
ss2704759562GRF|rs294636rev/G/Tagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaag02/13/1702/13/17151Genomicunknown
ss2789831150GNOMAD|rs294636rev/G/Tagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaag05/18/1705/18/17151Genomicunknown
ss2985248089AFFY|Axiom_PsorMich_Affx-21366501rev/G/Tagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaag05/24/1705/24/17151Genomicunknown
ss2991872467SWEGEN|NC_000003.11:g.14899778G>Trev/G/Tagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaag05/30/1705/30/17151Genomicunknown
ss3024428337BIOINF_KMB_FNS_UNIBA|3.14858271G>Trev/G/Tagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaag07/05/1707/05/17151Genomicunknown
ss3344897949CSHL|rs294636rev/G/Tagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaag10/02/1710/02/17151Genomicunknown
ss3383344944TOPMED|TOPMed_freeze_5?chr3:14,858,271rev/G/Tagtgtgaggggatgggtgagaaggaggatggctgagtgagtagatggaag10/03/1710/03/17151Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs294636|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='A/C'|mol=Genomic|build=151
 AAGATTGGGA ACACTTACAT ATCATATCTA TCTCCCCAGT CTGCCAACAG AAACCTCCGA
 GATGAGTACT CTGCTCAGTA TGGTCAAAGG AAGCCTGCAA GGCTCTATAT TTTCAGCTAT
 CTGGTGCCTG CCTGGTTTTT CATTCATTCA AAAAAATTCC TATTACGAGC CGTCTGTTCT
 AGACTCTGTA CTACAGGTAC TGAGGGTACA GTGTCTATAG TCTCTCTAGT AAAAATGCCC
 ATTATAATCA TAACTGGATG AGGTGTTATC TTCAGGTGGA TTCCTTGAGC ATACCAATAT
 ACTACATATG AGAAAGCCCT CTAACCCAAC TACCTACCCA TCCACTCATT CACCCATCTA
 TCTATTCATC TATCTATCCA TCCATCCATC CATCCATCCA TCCATCCATC CATCCACCCA
 CCCACCCGCT TCAGGACACT GGACATCTGA CCATCCACTC ACCCTTCCAG CCATCCTTCC
 ATCTACTCAC TCAGCCATCC
 M
 TCCTTCTCAC CCATCCCCTC ACACTCACTC ACCAAATATG GCTCAGCTTC TACTTCATGG
 AGCTAACACA AGGAGGGATC AAAGATGACT CAAGTACTCT CTCTGGCCTC AGACACAGTA
 CAGTGCAAAT TACTTCTGAG CCCAGAGAGA GTACAGAGTG AAGTCTTCTG AGCCTATCCT
 CTTCACCAGC ACTTTGCACT GTACTCTGGG TACTTTACTG TACTCTCTGG CCTCAGAGGT
 GGAGAGGGTG GGCTCAGACA GACTGCCTGG GTGGAATCCC AGCTGTGCCA CTTCAAGCAA
 GTTTCTTAAT CTCTCCGTGT CTCAGCTTTT TTTTTTTTCC AGTTTCATCT ATAAAACAGG
 GGTGATAGTA ATATAGGTAT AGATTATTTA GAGGATTCAT TGAAATAATG CAACAAAGGC
 ACTCAGAAGT GGCACAAAGA AGGTCCTCAT TAGATATTAG CTACTGGTGG TGTTTCCATA
 GCCTGACAGC AACAGACGAA

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_022517 ABBA01025151 AC024545 AC025163 AC025163.14 AC087591
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) . See additional population frequency from 1000Genome [here] Note: rs294636 allele is reverse to the genome back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceA
A/A
A/C
C/C
HWPA
C
ss116986271YRI 2IG 1.00000000 1.00000000
ss1302910921EAS 1008AF 0.975200000.02480000
EUR 1006AF 0.805199980.19479999
AFR 1322AF 0.915300010.08470000
AMR 694AF 0.874599990.12540001
SAS 978AF 0.848700050.15130000
ss135474510ENSEMBL_Venter 2IG 1.00000000 1.00000000
ENSEMBL_celera 2IG 1.00000000 1.00000000
ss14203304HapMap-CEUEuropean 226IG 0.646017670.300884960.053097340.479500000.796460150.20353982
HapMap-HCBAsian 86IG 0.930232580.06976745 1.000000000.965116260.03488372
HapMap-JPTAsian 88IG 1.00000000 1.00000000
HapMap-YRISub-Saharan African 226IG 0.840707960.15929204 0.751830000.920354010.07964602
HAPMAP-ASW 98IG 0.795918350.20408164 0.751830000.897959170.10204082
HAPMAP-CHBAsian 82IG 0.951219500.04878049 1.000000000.975609780.02439024
HAPMAP-CHD 170IG 0.929411770.07058824 1.000000000.964705880.03529412
HAPMAP-GIH 176IG 0.784090940.181818190.034090910.150222000.875000000.12500000
HAPMAP-LWK 180IG 0.722222210.266666680.011111110.479500000.855555530.14444445
HAPMAP-MEX 100IG 0.839999970.120000000.040000000.020022000.899999980.10000000
HAPMAP-MKK 286IG 0.825174810.153846160.020979020.150222000.902097880.09790210
HAPMAP-TSI 176IG 0.659090940.306818190.034090911.000000000.812500000.18750000
ss161931487CEUEuropean 2IG 1.00000000 0.500000000.50000000
ss163144324YRISub-Saharan African 2IG 1.00000000 1.00000000
ss166204618PGP 2IG 1.00000000 0.500000000.50000000
ss202173879BANTU 1IG1.00000000 1.00000000
ss219995834pilot_1_YRI_low_coverage_panel 118AF 0.932203410.06779661
ss231718766pilot_1_CEU_low_coverage_panel 120AF 0.766666650.23333333
ss239151051pilot_1_CHB+JPT_low_coverage_panel 120AF 0.983333350.01666667
ss99077458J. Craig Venter 2IG 1.00000000 1.00000000

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
Additional Freq. Data
0.201+/-0.2450000ALFRED: The Allele Frequency Database

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqwith2hitwithHapMapFreqWith1000GenomeData
DoubleHit found by:  BCM_SSAHASNP
UNKNOWNUNKNOWNUNKNOWN

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