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Reference SNP (refSNP) Cluster Report: rs2823962                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:100/151
Map to Genome Build:108/Weight 1
Validation Status:byClusterbyFreqbySubmitterwith2hitwithHapMapFreqWith1000GenomeData
Citation:PubMedLitVarNEW
Association:NHGRI GWAS
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:A/G (FWD)
Allele Origin:
Ancestral Allele:A
Variation Viewer:link to VariationViewer
Clinical Significance:NA
MAF/MinorAlleleCount:A=0.4403/2205 (1000 Genomes)
G=0.4798/60247 (TOPMED)
HGVS Names
  • CM000683.2:g.16673913A>G
  • NC_000021.8:g.18046232A>G
Links , Linkout
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss283474711 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs2823962 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss3998911PERLEGEN|P00204504byFreqfwd/TA/Gacacctaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactgaaact09/26/0104/07/04100Genomicunknown
ss10989535BCM_SSAHASNP|chr21.NT_011512.8_3708103byFreqfwd/TA/Gacacctaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactgaaact06/30/0304/07/04116Genomicunknown
ss13414359SC_SNP|NT_011512.8_3708103fwd/TA/Gacacctaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactgaaact10/23/0310/31/03119Genomicunknown
ss17708533CSHL-HAPMAP|CSHL-HuCC-200402.chr21.NT_011512.9_3708103fwd/TA/Gacacctaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactgaaact02/19/0403/04/04120Genomicunknown
ss21804700SSAHASNP|WGSA-200403-chr21.chr21.NT_011512.9_3708103fwd/TA/Gacacctaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactgaaact03/20/0403/20/04121Genomicunknown
ss24720459PERLEGEN|afd0012468byFreqfwd/TA/Gacacctaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactgaaact08/10/0409/13/04123Genomicunknown
ss44266380ABI|hCV16126639fwd/TA/Gacacctaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactgaaact07/18/0507/18/05126Genomicunknown
ss66098445AFFY|SNP_A-1969133fwd/TA/Gaatttctatgcaggaaggatatagcatcaaca10/27/0610/27/06127Genomicunknown
ss66712557ILLUMINA|HumanHap300v1.1_rs2823962fwd/TA/Gacacctaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactgaaact11/09/0611/09/06127Genomicunknown
ss67275544ILLUMINA|HumanHap550v1.1_rs2823962fwd/TA/Gacacctaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactgaaact11/14/0611/14/06127Genomicunknown
ss67676939ILLUMINA|HumanHap650Yv1.0_rs2823962fwd/TA/Gacacctaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactgaaact11/14/0611/14/06127Genomicunknown
ss70754048ILLUMINA|HumanHap550v3.0__rs2823962fwd/TA/Gacacctaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactgaaact04/20/0703/30/08130Genomicunknown
ss71326995ILLUMINA|HumanHap650Yv3.0_rs2823962fwd/TA/Gacacctaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactgaaact04/23/0704/23/07127Genomicunknown
ss75635884ILLUMINA|ILMN_Human_1M_rs2823962fwd/TA/Gacacctaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactgaaact08/28/0708/29/07129Genomicunknown
ss76061999AFFY|AFFY_6_1M_SNP_A-1969133fwd/TA/Gaatttctatgcaggaaggatatagcatcaaca08/28/0708/29/07129Genomicunknown
ss79148451ILLUMINA|HumanHap300v2.0_rs2823962fwd/TA/Gacacctaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactgaaact04/18/0711/18/07130Genomicunknown
ss84092622KRIBB_YJKIM|KHS633352fwd/TA/Gacacctaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactgaaact12/04/0712/06/07130Genomicunknown
ss91777894BCMHGSC_JDW|JWB-1472373fwd/TA/Gacacctaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactgaaact02/26/0803/02/08129Genomicunknown
ss96135814HUMANGENOME_JCVI|1103643077978fwd/TA/Gacacctaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactgaaact03/25/0803/25/08130Genomicunknown
ss106201624BGI|BGI_rs2823962fwd/TA/Gacacctaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactgaaact09/13/0806/18/09130Genomicunknown
ss1122890291000GENOMES|CEU.trio.12.15.2008_3730256_chr21_16968103fwd/TA/Gacacctaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactgaaact12/17/0812/17/08130Genomicunknown
ss1136246861000GENOMES|NA19240_2008_12_16_3370018_chr21_16968103fwd/TA/Gacacctaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactgaaact12/18/0812/18/08130Genomicunknown
ss117457616ILLUMINA-UK|NA18507_000004981_NCBI36.1_chr21_16968103fwd/TA/Gacacctaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactgaaact01/19/0901/19/09130Genomic99 %
ss122113347ILLUMINA|HumanCNV370v1_C_rs2823962fwd/TA/Gacacctaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactgaaact04/14/0904/15/09131Genomicunknown
ss138287174ENSEMBL|ENSSNP7318759fwd/TA/Gacacctaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactgaaact05/15/0905/17/09131Genomicunknown
ss144152010ENSEMBL|ENSSNP5554961fwd/TA/Gacacctaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactgaaact12/08/0810/17/09131Genomicunknown
ss154236773ILLUMINA|Human610_Quadv1_B_rs2823962-128_T_F_1501761978fwd/TA/Gacacctaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactgaaact06/18/0906/20/09131Genomicunknown
ss156703514GMI|GMI_SNP_72412261fwd/TA/Gacacctaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactgaaact06/24/0906/25/09131Genomicunknown
ss159413178ILLUMINA|Human660W-Quad_v1_A_rs2823962-128_T_F_1501761978fwd/TA/Gacacctaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactgaaact07/06/0907/07/09131Genomicunknown
ss160582870ILLUMINA|HumanOmni1-Quad_v1-0_B_rs2823962-128_T_F_1512110840fwd/TA/Gacacctaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactgaaact08/04/0910/03/09131Genomicunknown
ss167693182COMPLETE_GENOMICS|NA07022_36_chr21_16968103fwd/TA/Gacacctaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactgaaact09/30/0909/30/09132Genomicunknown
ss168922547COMPLETE_GENOMICS|NA19240_36_chr21_16968103fwd/TA/Gacacctaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactgaaact10/01/0910/01/09132Genomicunknown
ss171399426ILLUMINA|HumanCNV370-Quadv3_C_rs2823962-128_T_F_1501761978fwd/TA/Gacacctaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactgaaact10/01/0910/03/09132Genomicunknown
ss171838881COMPLETE_GENOMICS|NA20431_36_chr21_16968103fwd/TA/Gacacctaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactgaaact10/01/0910/01/09132Genomicunknown
ss173476211ILLUMINA|Human1M-Duov3_B_rs2823962-128_T_F_1501761978fwd/TA/Gacacctaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactgaaact10/01/0910/03/09132Genomicunknown
ss203961464BUSHMAN|BUSHMAN-chr21-16968102byFreqfwd/TA/Gacacctaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactgaaact02/16/1009/05/14132Genomicunknown
ss2284680471000GENOMES|pilot_1_YRI_10277730_chr21_16968103fwd/A/Gacacctaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactgaaact04/22/1004/22/10132Genomicunknown
ss2379139771000GENOMES|pilot_1_CEU_7518606_chr21_16968103fwd/A/Gacacctaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactgaaact05/01/1005/01/10132Genomicunknown
ss2440666241000GENOMES|pilot_1_CHB+JPT_5951701_chr21_16968103fwd/A/Gacacctaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactgaaact05/01/1005/01/10132Genomicunknown
ss283474711GMI|GMI_AK_SNP_7795132fwd/A/Gacacctaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactgaaact12/16/1012/16/10137Genomicunknown
ss292678568PJP|SNP_2184926_chr21_16968103fwd/A/Gacacctaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactgaaact01/21/1101/21/11134Genomicunknown
ss481545648ILLUMINA|HumanOmni1-Quad_v1-0_C_rs2823962-131_T_F_1859433943fwd/TA/Gtaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactg01/30/1208/28/15146Genomicunknown
ss491564459EXOME_CHIP|.GWAS._280685_chr_21_18046232fwd/TA/Gacacctaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactgaaact03/05/1203/06/12137Genomicunknown
ss537130759ILLUMINA|HumanOmni5-4v1_B_rs2823962-131_T_F_1885471849fwd/TA/Gtaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactg06/22/1208/29/15146Genomicunknown
ss566388255TISHKOFF|snp_chr21_18046232fwd/TA/Gtaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactg11/22/1211/23/12138Genomicunknown
ss662294003SSMP|21_18046232fwd/TA/Gtaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactg12/14/1202/14/15138Genomicunknown
ss780683900ILLUMINA|HumanOmni25Exome-8v1_A_exm-rs2823962-131_T_F_1990490949fwd/TA/Gtaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactg05/30/1307/10/15142Genomicunknown
ss783357319ILLUMINA|HumanOmniExpressExome-8v1_A_exm-rs2823962-131_T_F_1990490949fwd/TA/Gtaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactg05/31/1306/19/15142Genomicunknown
ss825478969ILLUMINA|HumanCNV370v1_C_rs2823962-126_T_F_IFB1136002950:0fwd/TA/Gtaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactg06/24/1311/21/14144Genomicunknown
ss832924846ILLUMINA|Human660W-Quad_v1_C_rs2823962-131_T_F_1859433943fwd/TA/Gtaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactg09/18/1307/02/15142Genomicunknown
ss833515676ILLUMINA|Human660W-Quad_v1_H_rs2823962-131_T_F_1859433943fwd/TA/Gtaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactg09/18/1307/02/15142Genomicunknown
ss994945326EVA-GONL|EVA-GONL_rs2823962fwd/TA/Gtaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactg04/23/1405/01/14142Genomicunknown
ss1082362267JMKIDD_LAB|HGDP_WGS_chr21_18046232fwd/TA/Gtaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactg07/10/1407/12/14142Genomicunknown
ss13656549761000GENOMES|PHASE3_V1_79479021fwd/A/Gtaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactg08/16/1408/16/14142Genomicunknown
ss1429131167DDI|DDI_rs2823962fwd/TA/Gtaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactg11/04/1411/04/14144Genomicunknown
ss1579592387EVA_GENOME_DK|EVA_GENOME_DK_snv_rs2823962fwd/TA/Gtaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactg02/19/1502/20/15144Genomicunknown
ss1639224284EVA_UK10K_ALSPAC|EVA_UK10K_ALSPAC_21_18046232_43796058fwd/A/Gtaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactg03/04/1503/04/15144Genomicunknown
ss1682218317EVA_UK10K_TWINSUK|EVA_UK10K_TWINSUK_21_18046232_43796058fwd/A/Gtaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactg03/04/1503/04/15144Genomicunknown
ss1699008818EVA_DECODE|EVA_DECODE_21_16968103_28865_rs2823962fwd/TA/Gtaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactg03/02/1503/05/15144Genomicunknown
ss1713710784EVA_SVP|EVA_SVP_1404863fwd/TA/Gtaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactg03/12/1503/12/15144Genomicunknown
ss1752400731ILLUMINA|OmniExpressExome-8v1-1_B_exm-rs2823962-131_T_F_1990490949fwd/TA/Gtaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactg05/27/1506/09/15146Genomicunknown
ss1809605689HAMMER_LAB|Hsieh_8636890fwd/TA/Gtaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactg07/15/1507/16/15146Genomicunknown
ss1917950262ILLUMINA|HumanExome-12v1-1_B_exm-rs2823962-131_T_F_1990490949fwd/TA/Gtaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactg10/16/1510/16/15147Genomicunknown
ss1938497426WEILL_CORNELL_DGM|SNV:chr21:18046232fwd/TA/Gtaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactg10/16/1510/19/15147Genomicunknown
ss1946558524ILLUMINA|HumanCoreExome-12v1-0_C_exm-rs2823962-131_T_F_1990490949fwd/TA/Gtaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactg10/29/1510/29/15147Genomicunknown
ss1959940176ILLUMINA|exm-rs2823962-131_T_F_1990490949fwd/TA/Gtaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactg11/13/1511/13/15147Genomicunknown
ss1969181418GENOMED|rs2823962fwd/TA/Gtaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactg02/16/1602/16/16147Genomicunknown
ss2030017446JJLAB|SNP10520001fwd/TA/Gtaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactg08/29/1608/31/16149Genomicunknown
ss2158617046USC_VALOUEV|NC_000021.8:g.18046232A>Gfwd/A/Gtaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactg11/17/1611/17/16150Genomicunknown
ss2244485548HUMAN_LONGEVITY|HLI-21-16673913-A-Gfwd/A/Gtaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactg11/18/1611/18/16150Genomicunknown
ss2411084090TOPMED|21_18046232_A/Gfwd/A/Gtaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactg11/19/1611/19/16150Genomicunknown
ss2629505176SYSTEMSBIOZJU|SYSTEMSBIOZJU_SNV6709004fwd/A/Gtaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactg01/06/1701/06/17151Genomicunknown
ss2633828540ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_rs2823962-131_T_F_18854718fwd/A/Gtaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactg02/02/1702/02/17151Genomicunknown
ss2633828541ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_seq-rs2823962-131_T_F_2130fwd/A/Gtaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactg02/02/1702/02/17151Genomicunknown
ss2704340543GRF|rs2823962fwd/A/Gtaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactg02/13/1702/13/17151Genomicunknown
ss2970037310GNOMAD|rs2823962fwd/A/Gtaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactg05/23/1705/23/17151Genomicunknown
ss2985223989AFFY|Axiom_PsorMich_Affx-17385043fwd/A/Gtaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactg05/24/1705/24/17151Genomicunknown
ss3018632047SWEGEN|NC_000021.8:g.18046232A>Gfwd/A/Gtaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactg05/30/1705/30/17151Genomicunknown
ss3022144771ILLUMINA|MEGA_Consortium_v2_15070954_A2_exm-rs2823962-131_T_F_1990490949fwd/A/Gtaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactg06/28/1706/28/17151Genomicunknown
ss3028843350BIOINF_KMB_FNS_UNIBA|21.16673913A>Gfwd/A/Gtaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactg07/05/1707/05/17151Genomicunknown
ss3352640364CSHL|rs2823962fwd/A/Gtaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactg10/02/1710/02/17151Genomicunknown
ss3366770011TOPMED|TOPMed_freeze_5?chr21:16,673,913fwd/A/Gtaacagatgaatttctatgcaggaaggatatagcatcaacaatcatactg10/03/1710/03/17151Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs2823962|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='A/G'|mol=Genomic|build=151
 TCACAATATT AATATTTCAG AGAAGGTAAA ATCTAAAGGA AAAAGCACTA AACAACATAA
 AGTGTACCAC TATATAATAA TGACTTAATC CATTCAGGCT GCTATAACAA AATAACTTAG
 ACTGGGTAGA TCATAAGCAA TAGAAACCTA TTTCTCAGAG TTCTAGAGGC TGGAAAGCTG
 AGATTAAGAC ACAGATTCAG TACATGATGA GGGCCAGTTT CCTGGGTCAT AGATGGCACC
 TTCTCACTGC CTCCTTGCAT GGTGGAAGAG GCTAATGAGC TCCCTTGGGC CTCTTTTATA
 AGGGCACCAA TCCCATTCAT GAGGACACTG TCCTTATGAT CTAATCACGT CCCAAAGGTC
 CTACCTCTTA ATACCATCAC CTTGGGGGTT AGGATGTGAA CGTATAAATT TGGGGGAGGG
 GACACAAATA TATCCACTAA AGCAATGAAT AAGGATAAAA TCCACAGTCA ACACCTAACA
 GATGAATTTC TATGCAGGAA
 R
 GGATATAGCA TCAACAATCA TACTGAAACT AATTTTAAAA ACACTTGAAG AAAGTTATAT
 GAATACATTA GTAGTAACTT TTATTTTCCT AAGTGCATAA TAGATCAAGC AGTCATAAAA
 TCAGTACCTA TATAAAAGAC CGAAGTATCA TAATTAATGA GATAGTAATA ATTAGTATTA
 ATTTAACTTT GTTCCCTGAA TATAAAGAGC AAGTCTAGTT TTCTGGTATC CTCAGAACAT
 TCACATTAGG ACACACACAC GCACACACAC AACCCTTGGG CTGAAACCAG AGTAGTAAGT
 AAATGAACAG CCGTTATTAT CCTGAGGGAA ATGTTGTTAT TGGAAACTGA AGTTTTGAGG
 AAATTAGTGG CCAACCCATG TGGGTCTTCA CAAGACATAC AGCTAAGCCT GAAAGCCCTG
 CACAAAGCTG GGAATATCTA AGATACTATA AACTCAATGA GAGTCTTAGT TATAACAACA
 AATATGCCCA CAAATGGAAC

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_011512 ABBA01057103
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) . See additional population frequency from 1000Genome [here] back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceA/A
A/G
G/G
HWPA
G
ss10989535HapMap-CEUEuropean 226IG0.451327440.415929200.132743360.438578000.659292040.34070796
HapMap-HCBAsian 86IG0.093023260.325581400.581395330.342782000.255813960.74418604
HapMap-JPTAsian 172IG0.069767450.465116290.465116290.342782000.302325580.69767439
HapMap-YRISub-Saharan African 224IG0.151785720.491071430.357142871.000000000.397321430.60267860
HAPMAP-ASW 98IG0.204081640.469387770.326530610.751830000.438775510.56122446
HAPMAP-CHBAsian 82IG0.097560970.390243890.512195110.751830000.292682920.70731705
HAPMAP-CHD 170IG0.011764710.400000010.588235320.099721000.211764710.78823531
HAPMAP-GIH 176IG0.147727270.511363630.340909090.583882000.403409090.59659094
HAPMAP-LWK 180IG0.211111110.488888890.300000011.000000000.455555560.54444444
HAPMAP-MEX 100IG0.579999980.340000000.080000000.527089000.750000000.25000000
HAPMAP-MKK 286IG0.195804190.489510480.314685311.000000000.440559450.55944055
HAPMAP-TSI 176IG0.318181810.352272720.329545470.010028000.494318190.50568181
ss117457616YRI 2IG 1.00000000 0.500000000.50000000
ss1365654976EAS 1008AF 0.236100000.76390004
EUR 1006AF 0.613300030.38670000
AFR 1322AF 0.382800010.61720002
AMR 694AF 0.678699970.32130000
SAS 978AF 0.381399990.61860001
ss138287174ENSEMBL_Watson 2IG 1.00000000 1.00000000
ss144152010ENSEMBL_Venter 2IG 1.00000000 1.00000000
ss167693182CEUEuropean 2IG 1.00000000 0.500000000.50000000
ss168922547YRISub-Saharan African 2IG 1.00000000 0.500000000.50000000
ss171838881PGP 2IG 1.00000000 1.00000000
ss203961464BUSHMAN_POP2 2IG 1.00000000 0.500000000.50000000
BANTU 2IG 1.00000000 0.500000000.50000000
ss228468047pilot_1_YRI_low_coverage_panel 118AF 0.415254240.58474576
ss237913977pilot_1_CEU_low_coverage_panel 120AF 0.666666690.33333334
ss244066624pilot_1_CHB+JPT_low_coverage_panel 120AF 0.291666660.70833331
ss24720459AFD_EUR_PANELEuropean 48IG0.291666660.666666690.041666670.050043000.625000000.37500000
AFD_AFR_PANELAfrican American 46IG0.130434780.304347810.565217380.250592000.282608690.71739131
AFD_CHN_PANELAsian 48IG0.041666670.333333340.625000001.000000000.208333330.79166669
ss3998911NCBI|NIHPDR 17AF 0.882352950.11764706
ss76061999ICMHP 2IG 1.00000000 1.00000000
ss96135814J. Craig Venter 2IG 1.00000000 1.00000000

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
Additional Freq. Data
0.493+/-0.0590000ALFRED: The Allele Frequency Database

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqbySubmitterwith2hitwithHapMapFreqWith1000GenomeData
Validated by: PERLEGEN
DoubleHit found by:  BCM_SSAHASNP
UNKNOWNUNKNOWNUNKNOWN

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