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Reference SNP (refSNP) Cluster Report: rs2782931                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:100/151
Map to Genome Build:108/Weight 1
Validation Status:byClusterbyFreqwith2hitWith1000GenomeData
Association:NHGRI GWAS PheGenI
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:C/T (FWD)
Allele Origin:
Ancestral Allele:C
Variation Viewer:link to VariationViewer
Clinical Significance:NA
MAF/MinorAlleleCount:T=0.2346/1175 (1000 Genomes)
T=0.2761/34673 (TOPMED)
HGVS Names
  • CM000671.2:g.112087910C>T
  • NC_000009.11:g.114850190C>T
  • NC_000009.12:g.112087910C>T
  • NM_001282640.1:c.1475-7745G>A
  • NM_001282643.1:c.1475-7745G>A
  • NM_022486.4:c.1475-7745G>A
  • XR_242600.1:n.1537-7745G>A
  • XR_929833.1:n.1799-7745G>A
  • XR_929835.1:n.1799-7745G>A
Links , Linkout
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss280369623 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs2782931 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss2238443TSC-CSHL|TSC0640265fwd/BC/Tacctgtgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactattagat06/14/0110/25/06108Genomicunknown
ss3937305SC_JCM|AL355533.12_100169fwd/BC/Tacctgtgaaatctgacccacaacaatcaacccaaaatgtatgcaagtaaaactattagat09/25/0110/10/03100Genomicunknown
ss12933963SC_SNP|NT_008470.15_16676609byFreqfwd/BC/Tacctgtgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactattagat10/21/0310/25/06123Genomicunknown
ss43391961ABI|hCV3119319fwd/BC/Tacctgtgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactattagat07/18/0507/18/05126Genomicunknown
ss66583239ILLUMINA|HumanHap300v1.1_rs2782931fwd/TC/Tacctgtgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactattagat11/09/0611/09/06127Genomicunknown
ss67272875ILLUMINA|HumanHap550v1.1_rs2782931fwd/BC/Tacctgtgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactattagat11/14/0611/14/06127Genomicunknown
ss67673819ILLUMINA|HumanHap650Yv1.0_rs2782931fwd/BC/Tacctgtgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactattagat11/14/0611/14/06127Genomicunknown
ss70751352ILLUMINA|HumanHap550v3.0__rs2782931fwd/BC/Tacctgtgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactattagat04/20/0703/30/08130Genomicunknown
ss71323853ILLUMINA|HumanHap650Yv3.0_rs2782931fwd/BC/Tacctgtgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactattagat04/23/0704/23/07127Genomicunknown
ss74864365ILLUMINA|ILMN_Human_1M_rs2782931fwd/BC/Tacctgtgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactattagat08/28/0708/29/07129Genomicunknown
ss79146707ILLUMINA|HumanHap300v2.0_rs2782931fwd/BC/Tacctgtgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactattagat04/18/0711/18/07130Genomicunknown
ss84082256KRIBB_YJKIM|KHS631009fwd/BC/Tacctgtgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactattagat12/04/0712/06/07130Genomicunknown
ss97744100HUMANGENOME_JCVI|1103652162523fwd/BC/Tacctgtgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactattagat03/30/0803/30/08130Genomicunknown
ss1090092071000GENOMES|CEU.trio.12.15.2008_2238284_chr9_113890011fwd/BC/Tacctgtgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactattagat12/16/0812/16/08130Genomicunknown
ss122103564ILLUMINA|HumanCNV370v1_C_rs2782931fwd/BC/Tacctgtgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactattagat04/14/0904/15/09131Genomicunknown
ss134260365ENSEMBL|ENSSNP2915541fwd/BC/Tacctgtgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactattagat12/08/0810/15/09131Genomicunknown
ss154233825ILLUMINA|Human610_Quadv1_B_rs2782931-128_B_F_1501741036fwd/BC/Tacctgtgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactattagat06/18/0906/20/09131Genomicunknown
ss159410279ILLUMINA|Human660W-Quad_v1_A_rs2782931-128_B_F_1501741036fwd/BC/Tacctgtgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactattagat07/06/0907/07/09131Genomicunknown
ss160578391ILLUMINA|HumanOmni1-Quad_v1-0_B_rs2782931-128_B_F_1501741036fwd/BC/Tacctgtgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactattagat08/04/0910/03/09131Genomicunknown
ss166842060COMPLETE_GENOMICS|NA20431_36_chr9_113890011fwd/BC/Tacctgtgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactattagat09/30/0909/30/09132Genomicunknown
ss171377849ILLUMINA|HumanCNV370-Quadv3_C_rs2782931-128_B_F_1501741036fwd/BC/Tacctgtgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactattagat10/01/0910/03/09132Genomicunknown
ss173460887ILLUMINA|Human1M-Duov3_B_rs2782931-128_B_F_1501741036fwd/BC/Tacctgtgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactattagat10/01/0910/03/09132Genomicunknown
ss200780859BUSHMAN|BUSHMAN-chr9-113890010fwd/BC/Tacctgtgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactattagat02/16/1003/07/10132Genomicunknown
ss206740063BCM-HGSC-SUB|BCM_CMT_1011-1861995fwd/BC/Tacctgtgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactattagat03/15/1003/18/10132Genomicunknown
ss2244110971000GENOMES|pilot_1_YRI_6220780_chr9_113890011fwd/C/Tacctgtgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactattagat04/22/1004/22/10132Genomicunknown
ss2349407181000GENOMES|pilot_1_CEU_4545347_chr9_113890011fwd/C/Tacctgtgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactattagat05/01/1005/01/10132Genomicunknown
ss2416929381000GENOMES|pilot_1_CHB+JPT_3578015_chr9_113890011fwd/C/Tacctgtgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactattagat05/01/1005/01/10132Genomicunknown
ss280369623GMI|GMI_AK_SNP_4689940fwd/C/Tacctgtgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactattagat12/16/1012/16/10137Genomicunknown
ss286079344GMI|GMI_NA10851_SNP_2092125fwd/C/Tacctgtgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactattagat12/17/1012/17/10138Genomicunknown
ss294355394PJP|SNP_3861752_chr9_113890011fwd/C/Tacctgtgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactattagat01/21/1101/21/11134Genomicunknown
ss480661290ILLUMINA|HumanOmni2.5-4v1_B_rs2782931-128_B_F_1782913233fwd/BC/Ttgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactat01/30/1210/29/16137Genomicunknown
ss480676767ILLUMINA|HumanOmniExpress-12v1_C_rs2782931-131_B_F_1857313146fwd/BC/Ttgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactat01/30/1210/27/16137Genomicunknown
ss481527637ILLUMINA|HumanOmni1-Quad_v1-0_C_rs2782931-131_B_F_1865405018fwd/BC/Ttgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactat01/30/1208/28/15146Genomicunknown
ss485125567ILLUMINA|HumanOmni2.5-4v1_D_rs2782931-131_B_F_1857313146fwd/BC/Ttgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactat01/30/1210/28/16137Genomicunknown
ss491426495EXOME_CHIP|.GWAS._142721_chr_9_114850190fwd/BC/Tacctgtgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactattagat03/05/1203/05/12137Genomicunknown
ss537125872ILLUMINA|HumanOmni5-4v1_B_rs2782931-131_B_F_1885472861fwd/BC/Ttgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactat06/22/1208/29/15146Genomicunknown
ss561582544TISHKOFF|snp_chr9_114850190fwd/BC/Ttgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactat11/22/1211/23/12138Genomicunknown
ss656079163SSMP|9_114850190fwd/BC/Ttgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactat12/14/1202/12/15138Genomicunknown
ss778506107ILLUMINA|HumanOmni25Exome-8v1_A_rs2782931-131_B_F_1867764084fwd/BC/Ttgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactat05/30/1307/10/15146Genomicunknown
ss780683863ILLUMINA|HumanOmni25Exome-8v1_A_exm-rs2782931-131_B_F_1990481847fwd/BC/Ttgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactat05/30/1307/10/15146Genomicunknown
ss783009120ILLUMINA|HumanOmni2.5-4v1_H_rs2782931-131_B_F_1857313146fwd/BC/Ttgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactat05/30/1307/29/15146Genomicunknown
ss783357282ILLUMINA|HumanOmniExpressExome-8v1_A_exm-rs2782931-131_B_F_1990481847fwd/BC/Ttgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactat05/31/1306/19/15146Genomicunknown
ss783969423ILLUMINA|HumanOmniExpressExome-8v1_A_rs2782931-131_B_F_1885472861fwd/BC/Ttgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactat05/31/1306/19/15146Genomicunknown
ss825477225ILLUMINA|HumanCNV370v1_C_rs2782931-126_B_F_IFB1135080178:0fwd/BC/Ttgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactat06/24/1311/21/14144Genomicunknown
ss832266435ILLUMINA|HumanOmniExpress-12v1_H_rs2782931-131_B_F_1857313146fwd/BC/Ttgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactat09/17/1306/19/15146Genomicunknown
ss833962292ILLUMINA|HumanOmni2.5-8v1_A_rs2782931-131_B_F_1867764084fwd/BC/Ttgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactat09/18/1307/29/15146Genomicunknown
ss986897468EVA-GONL|EVA-GONL_rs2782931fwd/BC/Ttgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactat04/23/1404/25/14142Genomicunknown
ss1076547863JMKIDD_LAB|HGDP_WGS_chr9_114850190fwd/BC/Ttgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactat07/10/1407/11/14142Genomicunknown
ss13351367561000GENOMES|PHASE3_V1_47695511fwd/C/Ttgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactat08/16/1408/16/14142Genomicunknown
ss1397565808HAMMER_LAB|HAMMER_LAB_rs2782931fwd/BC/Ttgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactat09/30/1409/30/14146Genomicunknown
ss1583227911EVA_GENOME_DK|EVA_GENOME_DK_snv_rs2782931fwd/BC/Ttgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactat02/19/1502/20/15144Genomicunknown
ss1596535429EVA_DECODE|EVA_DECODE_9_113890011_712061_rs2782931fwd/BC/Ttgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactat03/02/1503/03/15144Genomicunknown
ss1623390524EVA_UK10K_ALSPAC|EVA_UK10K_ALSPAC_9_114850190_26358719fwd/C/Ttgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactat03/04/1503/04/15144Genomicunknown
ss1666384557EVA_UK10K_TWINSUK|EVA_UK10K_TWINSUK_9_114850190_26358719fwd/C/Ttgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactat03/04/1503/04/15144Genomicunknown
ss1713134094EVA_SVP|EVA_SVP_828461fwd/BC/Ttgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactat03/12/1503/12/15144Genomicunknown
ss1752754747ILLUMINA|OmniExpressExome-8v1-1_B_exm-rs2782931-131_B_F_1990481847fwd/BC/Ttgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactat05/27/1506/09/15146Genomicunknown
ss1752754748ILLUMINA|OmniExpressExome-8v1-1_B_rs2782931-131_B_F_2087477502fwd/BC/Ttgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactat05/27/1506/09/15146Genomicunknown
ss1806125646HAMMER_LAB|Hsieh_5142536fwd/BC/Ttgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactat07/15/1507/16/15146Genomicunknown
ss1917839499ILLUMINA|HumanExome-12v1-1_B_exm-rs2782931-131_B_F_1990481847fwd/BC/Ttgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactat10/16/1510/16/15147Genomicunknown
ss1930212131WEILL_CORNELL_DGM|SNV:chr9:114850190fwd/BC/Ttgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactat10/16/1510/17/15147Genomicunknown
ss1946266379ILLUMINA|HumanCoreExome-12v1-0_C_exm-rs2782931-131_B_F_1990481847fwd/BC/Ttgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactat10/29/1510/29/15147Genomicunknown
ss1959208202ILLUMINA|exm-rs2782931-131_B_F_1990481847fwd/BC/Ttgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactat11/13/1511/13/15147Genomicunknown
ss1971289701GENOMED|rs2782931fwd/BC/Ttgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactat02/16/1602/16/16147Genomicunknown
ss2025826785JJLAB|SNP6329340fwd/BC/Ttgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactat08/29/1608/30/16149Genomicunknown
ss2154055280USC_VALOUEV|NC_000009.11:g.114850190C>Tfwd/C/Ttgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactat11/17/1611/17/16150Genomicunknown
ss2313760342HUMAN_LONGEVITY|HLI-9-112087910-C-Tfwd/C/Ttgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactat11/18/1611/18/16150Genomicunknown
ss2484266160TOPMED|9_114850190_C/Tfwd/C/Ttgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactat11/20/1611/20/16150Genomicunknown
ss2634906777ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_SoL-rs2782931-131_B_F_2131fwd/C/Ttgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactat02/02/1702/02/17151Genomicunknown
ss2634906778ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_rs2782931-131_B_F_20874775fwd/C/Ttgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactat02/02/1702/02/17151Genomicunknown
ss2634906779ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_seq-rs2782931-131_B_F_2130fwd/C/Ttgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactat02/02/1702/02/17151Genomicunknown
ss2635198804ILLUMINA|Cancer_BeadChip_11459870_A_rs2782931-128_B_F_1782913233fwd/C/Ttgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactat02/02/1702/02/17151Genomicunknown
ss2709933716GRF|rs2782931fwd/C/Ttgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactat02/13/1702/13/17151Genomicunknown
ss2882299913GNOMAD|rs2782931fwd/C/Ttgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactat05/19/1705/19/17151Genomicunknown
ss2985470585AFFY|Axiom_PsorMich_Affx-33079345fwd/C/Ttgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactat05/24/1705/24/17151Genomicunknown
ss3005461641SWEGEN|NC_000009.11:g.114850190C>Tfwd/C/Ttgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactat05/30/1705/30/17151Genomicunknown
ss3022956668ILLUMINA|MEGA_Consortium_v2_15070954_A2_exm-rs2782931-131_B_F_1990481847fwd/C/Ttgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactat06/28/1706/28/17151Genomicunknown
ss3026695652BIOINF_KMB_FNS_UNIBA|9.112087910C>Tfwd/C/Ttgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactat07/05/1707/05/17151Genomicunknown
ss3348823016CSHL|rs2782931fwd/C/Ttgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactat10/02/1710/02/17151Genomicunknown
ss3598490046TOPMED|TOPMed_freeze_5?chr9:112,087,910fwd/C/Ttgaaatctgacccacaacaatcaacccaaaatgtatccaagtaaaactat10/07/1710/07/17151Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs2782931|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='C/T'|mol=Genomic|build=151
 ACCTCAAGTG ATCCGCTCAC CTCGGCCTCC CAAAGTGCTG GGATTACAGG TATGAGCCAC
 TGAGCCAGGC CTAGGAAATT TAAAACTTAA AACATAAATG GACACAAAAA ATAGGGAGGA
 AATGAAACAG GTGACTAAGT TCAGGAAAAA ATAATGAAAA TACAAAATCA CATTAGAAAT
 AATAAAGACT AAATTTCATG GTGCCTAAAG AAGGGTAGAT TGAATAAAAG GCATTGAAGA
 AATATAGGAA AACAACTGAA AATAATAAAA ATGAGATCAA AAAGAAGTTA AAAGGGTCAA
 AAATAAAGTG AATGAAGTGG AATATAGGCA AAGATCCAAC ACATGTATAA TTAAATTATC
 TGAAGAAGAT AAACAAGCAT GAAACAGAAT TAGTGTTTAA AACTACAATT CAAGATAACT
 TTACAAGAAT AAAGAGACCT GAGTAGAAAT ACTAAAGGGA TACACTGGGT ACCTGTGAAA
 TCTGACCCAC AACAATCAAC
 Y
 CCAAAATGTA TCCAAGTAAA ACTATTAGAT TTTAAAGATA AAGGAAGAAA TCCTCAGGGT
 CTTCACTCAA AGAAATAAAC ATAACATCCA AGGGCAAAAG AATCAGGCTG CATCAGACTT
 CTCAAAAGCT ACATAGAAAG CAAGGCAAGA AAAGAACTGA ATCTTTTTAA GACACTCAAA
 CCAAGAAAGT GTGAATTAAG ATTTTTATAT CTAGCCAAGC TACCTTTCAA ATATCAAGGC
 TATACAGATA CAATTCTAAA TATCCAAGAA CTCAAGGAAT ACTGTGCTCT TAAGGAATCT
 ACTAGAAAAT GAGCTTCATC CAAGAGATAA ACTGAGGAAA CTTCAGTAAA AGGATTGGTG
 ATAAGCATTT GCTGTATTCA ATTGTAGCTC TAAGACAAAA ATAAAGATGG GGCGAGGCGG
 AAGAGTGATA TATAAATGCT ATATGTTTTC ATAAAGTAGA AATAATGCAA CTGAAAAACT
 GAGAGGAAAA GGGATGCAGA

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_008470 ABBA01042717 AC010824 AL138756
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) . See additional population frequency from 1000Genome [here] back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceC/C
C/T
T/T
HWPC
T
ss12933963HapMap-CEUEuropean 226IG0.433628320.477876100.088495570.371093000.672566350.32743362
HapMap-HCBAsian 84IG0.428571430.547619040.023809520.050043000.702380960.29761904
HapMap-JPTAsian 172IG0.581395330.348837200.069767450.654721000.755813960.24418604
HapMap-YRISub-Saharan African 224IG0.750000000.25000000 0.479500000.875000000.12500000
HAPMAP-ASW 98IG0.571428600.408163280.020408160.250592000.775510190.22448979
HAPMAP-CHBAsian 82IG0.682926830.268292700.048780490.527089000.817073170.18292683
HAPMAP-CHD 170IG0.611764730.352941190.035294120.654721000.788235310.21176471
HAPMAP-GIH 176IG0.681818190.295454530.022727270.751830000.829545440.17045455
HAPMAP-LWK 180IG0.755555570.211111110.033333340.273322000.861111100.13888890
HAPMAP-MEX 100IG0.680000010.239999990.080000000.099721000.800000010.20000000
HAPMAP-MKK 286IG0.552447560.398601410.048951050.438578000.751748260.24825175
HAPMAP-TSI 176IG0.488636370.420454530.090909091.000000000.698863630.30113637
ss1335136756EAS 1008AF 0.765900020.23410000
EUR 1006AF 0.678900000.32110000
AFR 1322AF 0.807100000.19290000
AMR 694AF 0.752200010.24780001
SAS 978AF 0.806699990.19329999
ss134260365ENSEMBL_Venter 2IG 1.00000000 1.00000000
ss166842060PGP 2IG 1.00000000 1.00000000
ss200780859BANTU 2IG 1.00000000 0.500000000.50000000
ss224411097pilot_1_YRI_low_coverage_panel 118AF 0.847457650.15254237
ss234940718pilot_1_CEU_low_coverage_panel 120AF 0.691666660.30833334
ss241692938pilot_1_CHB+JPT_low_coverage_panel 120AF 0.741666670.25833333
ss97744100J. Craig Venter 2IG 1.00000000 1.00000000

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
Additional Freq. Data
0.359+/-0.2250000ALFRED: The Allele Frequency Database

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqwith2hitWith1000GenomeData
DoubleHit found by:  BCM_SSAHASNPNCBI
UNKNOWNUNKNOWNUNKNOWN

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