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Reference SNP (refSNP) Cluster Report: rs2405657                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:100/151
Map to Genome Build:108/Weight 1
Validation Status:byClusterbyFreqbySubmitterwith2hitwithHapMapFreqWith1000GenomeData
Citation:PubMedLitVarNEW
Association:NHGRI GWAS
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:A/G (FWD)
Allele Origin:
Ancestral Allele:G
Variation Viewer:link to VariationViewer
Clinical Significance:NA
MAF/MinorAlleleCount:A=0.4016/2011 (1000 Genomes)
A=0.3494/43879 (TOPMED)
HGVS Names
  • CM000673.2:g.97811564A>G
  • NC_000011.9:g.97682564A>G
Links , Linkout
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss281131071 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs2405657 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss3370714TSC-CSHL|TSC1638993fwd/TA/Gtccctcattaaaatatttatatcatttcattctataccacccaattcagtatttaaatat09/20/0110/25/06100Genomicunknown
ss15622419SC_SNP|NT_033899.6_1226416fwd/TA/Gtccctcattaaaatatttatatcatttcattctataccacccaattcagtatttaaatat11/17/0311/22/03120Genomicunknown
ss17426957CSHL-HAPMAP|CSHL-HuCC-200402.chr11.NT_033899.6_1226416fwd/TA/Gtccctcattaaaatatttatatcatttcattctataccacccaattcagtatttaaatat02/19/0403/04/04120Genomicunknown
ss20825501SSAHASNP|WGSA-200403-chr11.chr11.NT_033899.6_1226416fwd/TA/Gtccctcattaaaatatttatatcatttcattctataccacccaattcagtatttaaatat03/19/0403/19/04121Genomicunknown
ss24066075PERLEGEN|afd1735745byFreqfwd/TA/Gtccctcattaaaatatttatatcatttcattctataccacccaattcagtatttaaatat08/10/0409/13/04123Genomicunknown
ss38775314ABI|hCV27132457byFreqfwd/TA/Gtccctcattaaaatatttatatcatttcattctataccacccaattcagtatttaaatat07/16/0511/02/06126Genomicunknown
ss66645402ILLUMINA|HumanHap300v1.1_rs2405657fwd/TA/Gtccctcattaaaatatttatatcatttcattctataccacccaattcagtatttaaatat11/09/0611/09/06127Genomicunknown
ss67252240ILLUMINA|HumanHap550v1.1_rs2405657fwd/TA/Gtccctcattaaaatatttatatcatttcattctataccacccaattcagtatttaaatat11/14/0611/14/06127Genomicunknown
ss67650086ILLUMINA|HumanHap650Yv1.0_rs2405657fwd/TA/Gtccctcattaaaatatttatatcatttcattctataccacccaattcagtatttaaatat11/14/0611/14/06127Genomicunknown
ss70730587ILLUMINA|HumanHap550v3.0__rs2405657fwd/TA/Gtccctcattaaaatatttatatcatttcattctataccacccaattcagtatttaaatat04/20/0703/30/08130Genomicunknown
ss71300008ILLUMINA|HumanHap650Yv3.0_rs2405657fwd/TA/Gtccctcattaaaatatttatatcatttcattctataccacccaattcagtatttaaatat04/23/0704/23/07127Genomicunknown
ss75535170ILLUMINA|ILMN_Human_1M_rs2405657fwd/TA/Gtccctcattaaaatatttatatcatttcattctataccacccaattcagtatttaaatat08/28/0708/29/07129Genomicunknown
ss78600905HGSV|Cor18507_SNV_20070510.chr11_97187774fwd/TA/Gtccctcattaaaatatttatatcatttcattctataccacccaattcagtatttaaatat10/19/0710/20/07129Genomicunknown
ss79133735ILLUMINA|HumanHap300v2.0_rs2405657fwd/TA/Gtccctcattaaaatatttatatcatttcattctataccacccaattcagtatttaaatat04/18/0711/18/07130Genomicunknown
ss81492363HGSV|Cor18555_SNV_20070510.chr11_97187774fwd/TA/Gtccctcattaaaatatttatatcatttcattctataccacccaattcagtatttaaatat11/27/0711/30/07130Genomicunknown
ss84046143KRIBB_YJKIM|KHS613393fwd/TA/Gtccctcattaaaatatttatatcatttcattctataccacccaattcagtatttaaatat12/04/0712/06/07130Genomicunknown
ss84468143HGSV|Cor18517_SNV_20070510.chr11_97187774fwd/TA/Gtccctcattaaaatatttatatcatttcattctataccacccaattcagtatttaaatat12/06/0712/07/07130Genomicunknown
ss88720190BCMHGSC_JDW|JWB-0464718fwd/TA/Gtccctcattaaaatatttatatcatttcattctataccacccaattcagtatttaaatat02/26/0802/27/08129Genomicunknown
ss97410182HUMANGENOME_JCVI|1103649765846fwd/TA/Gtccctcattaaaatatttatatcatttcattctataccacccaattcagtatttaaatat03/29/0803/29/08130Genomicunknown
ss102990931BGI|BGI_rs2405657fwd/TA/Gtccctcattaaaatatttatatcatttcattctataccacccaattcagtatttaaatat06/05/0810/20/09131Genomicunknown
ss1109015611000GENOMES|CEU.trio.12.15.2008_2601936_chr11_97187774fwd/TA/Gtccctcattaaaatatttatatcatttcattctataccacccaattcagtatttaaatat12/17/0812/17/08130Genomicunknown
ss119940357ILLUMINA-UK|NA18507_000124923_NCBI36.1_chr11_97187774fwd/TA/Gtccctcattaaaatatttatatcatttcattctataccacccaattcagtatttaaatat01/21/0902/06/09131Genomic99 %
ss122027703ILLUMINA|HumanCNV370v1_C_rs2405657fwd/TA/Gtccctcattaaaatatttatatcatttcattctataccacccaattcagtatttaaatat04/14/0904/15/09131Genomicunknown
ss132752618ENSEMBL|ENSSNP6446288fwd/TA/Gtccctcattaaaatatttatatcatttcattctataccacccaattcagtatttaaatat05/11/0905/14/09131Genomicunknown
ss137602409ENSEMBL|ENSSNP649333fwd/TA/Gtccctcattaaaatatttatatcatttcattctataccacccaattcagtatttaaatat12/08/0810/15/09131Genomicunknown
ss153910096ILLUMINA|Human610_Quadv1_B_rs2405657-127_T_F_1501725062fwd/TA/Gtccctcattaaaatatttatatcatttcattctataccacccaattcagtatttaaatat06/18/0906/20/09131Genomicunknown
ss156665214GMI|GMI_SNP_70319116fwd/TA/Gtccctcattaaaatatttatatcatttcattctataccacccaattcagtatttaaatat06/24/0906/25/09131Genomicunknown
ss159387933ILLUMINA|Human660W-Quad_v1_A_rs2405657-128_T_F_1501725062fwd/TA/Gtccctcattaaaatatttatatcatttcattctataccacccaattcagtatttaaatat07/06/0907/07/09131Genomicunknown
ss170691491COMPLETE_GENOMICS|NA19240_36_chr11_97187774fwd/TA/Gtccctcattaaaatatttatatcatttcattctataccacccaattcagtatttaaatat10/01/0910/01/09132Genomicunknown
ss171243530ILLUMINA|HumanCNV370-Quadv3_C_rs2405657-127_T_F_1501725062fwd/TA/Gtccctcattaaaatatttatatcatttcattctataccacccaattcagtatttaaatat10/01/0910/03/09132Genomicunknown
ss173329677ILLUMINA|Human1M-Duov3_B_rs2405657-127_T_F_1501725062fwd/TA/Gtccctcattaaaatatttatatcatttcattctataccacccaattcagtatttaaatat10/01/0910/03/09132Genomicunknown
ss207537231BCM-HGSC-SUB|BCM_CMT_1011-2135853fwd/TA/Gtccctcattaaaatatttatatcatttcattctataccacccaattcagtatttaaatat03/15/1003/19/10132Genomicunknown
ss2111810871000GENOMES|YRI.trio.3.2010_1051277_chr11_97187774fwd/TA/Gtccctcattaaaatatttatatcatttcattctataccacccaattcagtatttaaatat03/29/1003/30/10132Genomicunknown
ss2254076701000GENOMES|pilot_1_YRI_7217353_chr11_97187774fwd/A/Gtccctcattaaaatatttatatcatttcattctataccacccaattcagtatttaaatat04/22/1004/22/10132Genomicunknown
ss2356780061000GENOMES|pilot_1_CEU_5282635_chr11_97187774fwd/A/Gtccctcattaaaatatttatatcatttcattctataccacccaattcagtatttaaatat05/01/1005/01/10132Genomicunknown
ss2422849181000GENOMES|pilot_1_CHB+JPT_4169995_chr11_97187774fwd/A/Gtccctcattaaaatatttatatcatttcattctataccacccaattcagtatttaaatat05/01/1005/01/10132Genomicunknown
ss281131071GMI|GMI_AK_SNP_5451460fwd/A/Gtccctcattaaaatatttatatcatttcattctataccacccaattcagtatttaaatat12/16/1012/16/10137Genomicunknown
ss291117503PJP|SNP_623861_chr11_97187774fwd/A/Gtccctcattaaaatatttatatcatttcattctataccacccaattcagtatttaaatat01/21/1101/21/11134Genomicunknown
ss479566762ILLUMINA|HumanOmni2.5-4v1_D_kgp11112667-0_T_F_1798313651fwd/TA/Gcattaaaatatttatatcatttcattctataccacccaattcagtattta01/30/1210/27/16137Genomicunknown
ss482946938ILLUMINA|HumanOmni2.5-4v1_B_SNP11-97187774-0_T_F_1618574402fwd/TA/Gcattaaaatatttatatcatttcattctataccacccaattcagtattta01/30/1210/28/16137Genomicunknown
ss491457899EXOME_CHIP|.GWAS._174125_chr_11_97682564fwd/TA/Gtccctcattaaaatatttatatcatttcattctataccacccaattcagtatttaaatat03/05/1203/05/12137Genomicunknown
ss533095426ILLUMINA|HumanOmni5-4v1_B_kgp11112667-0_T_F_1798313651fwd/TA/Gcattaaaatatttatatcatttcattctataccacccaattcagtattta06/22/1208/29/15146Genomicunknown
ss562762923TISHKOFF|snp_chr11_97682564fwd/TA/Gcattaaaatatttatatcatttcattctataccacccaattcagtattta11/22/1211/23/12138Genomicunknown
ss658281950SSMP|11_97682564fwd/TA/Gcattaaaatatttatatcatttcattctataccacccaattcagtattta12/14/1202/13/15138Genomicunknown
ss779610638ILLUMINA|HumanOmni25Exome-8v1_A_kgp11112667-0_T_F_1798313651fwd/TA/Gcattaaaatatttatatcatttcattctataccacccaattcagtattta05/30/1307/10/15142Genomicunknown
ss780683434ILLUMINA|HumanOmni25Exome-8v1_A_exm-rs2405657-131_T_F_1990490386fwd/TA/Gcattaaaatatttatatcatttcattctataccacccaattcagtattta05/30/1307/10/15142Genomicunknown
ss781013490ILLUMINA|HumanOmni2.5-4v1_H_kgp11112667-0_T_F_1798313651fwd/TA/Gcattaaaatatttatatcatttcattctataccacccaattcagtattta05/30/1307/29/15142Genomicunknown
ss783356830ILLUMINA|HumanOmniExpressExome-8v1_A_exm-rs2405657-131_T_F_1990490386fwd/TA/Gcattaaaatatttatatcatttcattctataccacccaattcagtattta05/31/1306/18/15142Genomicunknown
ss825464253ILLUMINA|HumanCNV370v1_C_rs2405657-126_T_F_IFB1135614049:0fwd/TA/Gcattaaaatatttatatcatttcattctataccacccaattcagtattta06/24/1311/21/14144Genomicunknown
ss832899692ILLUMINA|Human660W-Quad_v1_C_rs2405657-131_T_F_1863990462fwd/TA/Gcattaaaatatttatatcatttcattctataccacccaattcagtattta09/18/1307/02/15142Genomicunknown
ss833490522ILLUMINA|Human660W-Quad_v1_H_rs2405657-131_T_F_1863990462fwd/TA/Gcattaaaatatttatatcatttcattctataccacccaattcagtattta09/18/1307/02/15142Genomicunknown
ss835082838ILLUMINA|HumanOmni2.5-8v1_A_kgp11112667-0_T_F_1798313651fwd/TA/Gcattaaaatatttatatcatttcattctataccacccaattcagtattta09/18/1307/29/15142Genomicunknown
ss988857139EVA-GONL|EVA-GONL_rs2405657fwd/TA/Gcattaaaatatttatatcatttcattctataccacccaattcagtattta04/23/1404/25/14142Genomicunknown
ss1077966454JMKIDD_LAB|HGDP_WGS_chr11_97682564fwd/TA/Gcattaaaatatttatatcatttcattctataccacccaattcagtattta07/10/1407/12/14142Genomicunknown
ss13425736371000GENOMES|PHASE3_V1_55433732fwd/A/Gcattaaaatatttatatcatttcattctataccacccaattcagtattta08/16/1408/16/14142Genomicunknown
ss1426728482DDI|DDI_rs2405657fwd/TA/Gcattaaaatatttatatcatttcattctataccacccaattcagtattta11/04/1411/04/14144Genomicunknown
ss1575887941EVA_GENOME_DK|EVA_GENOME_DK_snv_rs2405657fwd/TA/Gcattaaaatatttatatcatttcattctataccacccaattcagtattta02/19/1502/19/15144Genomicunknown
ss1598520478EVA_DECODE|EVA_DECODE_11_97187774_730276_rs2405657fwd/TA/Gcattaaaatatttatatcatttcattctataccacccaattcagtattta03/02/1503/04/15144Genomicunknown
ss1627253544EVA_UK10K_ALSPAC|EVA_UK10K_ALSPAC_11_97682564_30602016fwd/A/Gcattaaaatatttatatcatttcattctataccacccaattcagtattta03/04/1503/04/15144Genomicunknown
ss1670247577EVA_UK10K_TWINSUK|EVA_UK10K_TWINSUK_11_97682564_30602016fwd/A/Gcattaaaatatttatatcatttcattctataccacccaattcagtattta03/04/1503/04/15144Genomicunknown
ss1713277185EVA_SVP|EVA_SVP_971552fwd/TA/Gcattaaaatatttatatcatttcattctataccacccaattcagtattta03/12/1503/12/15144Genomicunknown
ss1752040640ILLUMINA|OmniExpressExome-8v1-1_B_exm-rs2405657-131_T_F_1990490386fwd/TA/Gcattaaaatatttatatcatttcattctataccacccaattcagtattta05/27/1506/09/15146Genomicunknown
ss1806952081HAMMER_LAB|Hsieh_5972225fwd/TA/Gcattaaaatatttatatcatttcattctataccacccaattcagtattta07/15/1507/16/15146Genomicunknown
ss1917865345ILLUMINA|HumanExome-12v1-1_B_exm-rs2405657-131_T_F_1990490386fwd/TA/Gcattaaaatatttatatcatttcattctataccacccaattcagtattta10/16/1510/16/15147Genomicunknown
ss1932219907WEILL_CORNELL_DGM|SNV:chr11:97682564fwd/TA/Gcattaaaatatttatatcatttcattctataccacccaattcagtattta10/16/1510/17/15147Genomicunknown
ss1946320117ILLUMINA|HumanCoreExome-12v1-0_C_exm-rs2405657-131_T_F_1990490386fwd/TA/Gcattaaaatatttatatcatttcattctataccacccaattcagtattta10/29/1510/29/15147Genomicunknown
ss1959378034ILLUMINA|exm-rs2405657-131_T_F_1990490386fwd/TA/Gcattaaaatatttatatcatttcattctataccacccaattcagtattta11/13/1511/13/15147Genomicunknown
ss1967431710GENOMED|rs2405657fwd/TA/Gcattaaaatatttatatcatttcattctataccacccaattcagtattta02/16/1602/16/16147Genomicunknown
ss2026851855JJLAB|SNP7354410fwd/TA/Gcattaaaatatttatatcatttcattctataccacccaattcagtattta08/29/1608/30/16149Genomicunknown
ss2094791672ILLUMINA|Immuno_BeadChip_11419691_B_rs2405657-131_T_F_1863990462fwd/TA/Gcattaaaatatttatatcatttcattctataccacccaattcagtattta09/27/1609/27/16150Genomicunknown
ss2095025351ILLUMINA|InfiniumImmunoArray-24v2-0_A_rs2405657-131_T_F_1863990462fwd/TA/Gcattaaaatatttatatcatttcattctataccacccaattcagtattta09/27/1609/27/16150Genomicunknown
ss2155163930USC_VALOUEV|NC_000011.9:g.97682564A>Gfwd/A/Gcattaaaatatttatatcatttcattctataccacccaattcagtattta11/17/1611/17/16150Genomicunknown
ss2184892948HUMAN_LONGEVITY|HLI-11-97811564-A-Gfwd/A/Gcattaaaatatttatatcatttcattctataccacccaattcagtattta11/18/1611/18/16150Genomicunknown
ss2348469558TOPMED|11_97682564_A/Gfwd/A/Gcattaaaatatttatatcatttcattctataccacccaattcagtattta11/19/1611/19/16150Genomicunknown
ss2627899027SYSTEMSBIOZJU|SYSTEMSBIOZJU_SNV4668600fwd/A/Gcattaaaatatttatatcatttcattctataccacccaattcagtattta01/06/1701/06/17151Genomicunknown
ss2632875680ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_kgp11112667-0_T_F_17983136fwd/A/Gcattaaaatatttatatcatttcattctataccacccaattcagtattta02/02/1702/02/17151Genomicunknown
ss2632875681ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_rs2405657-131_T_F_18854711fwd/A/Gcattaaaatatttatatcatttcattctataccacccaattcagtattta02/02/1702/02/17151Genomicunknown
ss2632875682ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_seq-rs2405657-131_T_F_2130fwd/A/Gcattaaaatatttatatcatttcattctataccacccaattcagtattta02/02/1702/02/17151Genomicunknown
ss2699467192GRF|rs2405657fwd/A/Gcattaaaatatttatatcatttcattctataccacccaattcagtattta02/13/1702/13/17151Genomicunknown
ss2903350930GNOMAD|rs2405657fwd/A/Gcattaaaatatttatatcatttcattctataccacccaattcagtattta05/22/1705/22/17151Genomicunknown
ss2984954102AFFY|Axiom_PsorMich_Affx-6495781fwd/A/Gcattaaaatatttatatcatttcattctataccacccaattcagtattta05/24/1705/24/17151Genomicunknown
ss3008620682SWEGEN|NC_000011.9:g.97682564A>Gfwd/A/Gcattaaaatatttatatcatttcattctataccacccaattcagtattta05/30/1705/30/17151Genomicunknown
ss3021367294ILLUMINA|MEGA_Consortium_v2_15070954_A2_exm-rs2405657-131_T_F_1990490386fwd/A/Gcattaaaatatttatatcatttcattctataccacccaattcagtattta06/28/1706/28/17151Genomicunknown
ss3027223109BIOINF_KMB_FNS_UNIBA|11.97811564A>Gfwd/A/Gcattaaaatatttatatcatttcattctataccacccaattcagtattta07/05/1707/05/17151Genomicunknown
ss3153856728TOPMED|TOPMed_freeze_5?chr11:97,811,564fwd/A/Gcattaaaatatttatatcatttcattctataccacccaattcagtattta09/30/1709/30/17151Genomicunknown
ss3349746111CSHL|rs2405657fwd/A/Gcattaaaatatttatatcatttcattctataccacccaattcagtattta10/02/1710/02/17151Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs2405657|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='A/G'|mol=Genomic|build=151
 CTAACTCATT ACCCAGACAT CTATTTGGGC TTTTGTTGAC TAAATATCAT GAACTGTGCT
 CTGTGCTAGT TTTTAAGTAT ACAAAGATTT TTTGAAGATG GAATAGGCCT TGTGCTCAAA
 AAGATTTAGT CGTTTGGAGA TATTATACTC ACATATACAC AAACATACAA TTGCTGTGGC
 AAAAATAAGG AATCAACAGG GCCACACCAA GACATGGACA TTGCTAACAA GGAGCCACTC
 CTGTTAAAAC TAGGGGAATA GATAAGAAAG AGTCAATCTG GGCCATATAA TCAGTTAAGA
 TTATGCAGGA TCTGGGAAGG AAATAAGATG GCAATTATCT CTGTGGAACA TACTTGGGGA
 AATAGAAGTA TGAGGACTAT GATGTTTTCT ATGCTTTTCC CAATTTTATG CAAATGTTGT
 GCAATTGGCC AAGTCTCACC AACTCTATTG GACTCCAGCC CTTGTTTATG TCCCTCATTA
 AAATATTTAT ATCATTTCAT
 R
 TCTATACCAC CCAATTCAGT ATTTAAATAT ATTCTAATTT GTAGTGCATA TTTTTACACA
 TCTTTTTTAT ACCCCAAAAA TTCTAATGTC CATAAAAGAC AAGGTCATAT TGTATTTCTT
 TTTATGCAGT GAGACTGAGG TCATGAGGAA AGCCTGTACA TTAGGATCAC ACAGAAGAAT
 ATTTGCATCT TGGGTTGTAT TCTTTCTATC TTCATTACCT TGAGTAAGTT ACTTATGCTT
 AATAAACCTT GAATTACTTA ACCACAAAAT GACTGGCTCT AAGGGTGCTG AATAAATATA
 ATCATTGCTA AGTTCAATGT AAGGTGTATT AGCAAGAGAC TTCTGAAACT TTTCTTTTGA
 AAAATAAATC ATACAAAAAC ACCTGAAAGA AATATTTGGT AAGGGTAATT ATAGTGCCAT
 ATAGAAAACT ATAGCCAACA TCTGTTCATA CATCCACAAA TCCCTCTTCA AAACACAGCA
 TCATATAAAT ATTATCTCAG

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_033899 ABBA01039991
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) . See additional population frequency from 1000Genome [here] back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceA/A
A/G
G/G
HWPA
G
ss119940357YRI 2IG 1.00000000 1.00000000
ss132752618ENSEMBL_Watson 2IG 1.00000000 1.00000000
ss1342573637EAS 1008AF 0.548599960.45140001
EUR 1006AF 0.381700010.61830002
AFR 1322AF 0.261000010.73900002
AMR 694AF 0.396299990.60369998
SAS 978AF 0.464200020.53579998
ss137602409ENSEMBL_Venter 2IG 1.00000000 1.00000000
ENSEMBL_celera 2IG 1.00000000 1.00000000
ss170691491YRISub-Saharan African 2IG 1.00000000 0.500000000.50000000
ss225407670pilot_1_YRI_low_coverage_panel 118AF 0.262711850.73728812
ss235678006pilot_1_CEU_low_coverage_panel 120AF 0.300000010.69999999
ss24066075AFD_EUR_PANELEuropean 48IG0.125000000.541666690.333333340.527089000.395833340.60416669
AFD_AFR_PANELAfrican American 44IG0.090909090.318181810.590909060.479500000.250000000.75000000
AFD_CHN_PANELAsian 48IG0.333333340.375000000.291666660.250592000.520833310.47916666
ss242284918pilot_1_CHB+JPT_low_coverage_panel 120AF 0.574999990.42500001
ss38775314HapMap-CEUEuropean 226IG0.088495570.433628320.477876101.000000000.305309740.69469029
HapMap-HCBAsian 86IG0.302325580.581395330.116279070.200325000.593023240.40697673
HapMap-JPTAsian 172IG0.302325580.523255830.174418600.583882000.563953460.43604651
HapMap-YRISub-Saharan African 226IG0.044247790.336283180.619469051.000000000.212389380.78761059
HAPMAP-ASW 96IG0.104166660.416666660.479166661.000000000.312500000.68750000
HAPMAP-CHBAsian 76IG0.368421050.447368410.184210520.654721000.592105270.40789473
HAPMAP-CHD 166IG0.265060250.602409660.132530120.050043000.566265050.43373495
HAPMAP-GIH 176IG0.238636360.454545470.306818190.438578000.465909090.53409094
HAPMAP-LWK 180IG0.111111110.477777780.411111120.654721000.349999990.64999998
HAPMAP-MEX 100IG0.220000000.460000010.319999990.654721000.449999990.55000001
HAPMAP-MKK 284IG0.063380280.394366200.542253491.000000000.260563370.73943663
HAPMAP-TSI 176IG0.147727270.511363630.340909090.583882000.403409090.59659094
ss97410182J. Craig Venter 2IG 1.00000000 1.00000000

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
Additional Freq. Data
0.481+/-0.0970000ALFRED: The Allele Frequency Database

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqbySubmitterwith2hitwithHapMapFreqWith1000GenomeData
Validated by: PERLEGEN
DoubleHit found by:  BCM_SSAHASNPNCBI
UNKNOWNUNKNOWNUNKNOWN

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