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Reference SNP (refSNP) Cluster Report: rs1735970                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:89/151
Map to Genome Build:108/Weight 1
Validation Status:byClusterbyFreqbySubmitterwithHapMapFreqWith1000GenomeData
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:A/G (FWD)
Allele Origin:
Ancestral Allele:G
Variation Viewer:link to VariationViewer
Clinical Significance:NA
MAF/MinorAlleleCount:A=0.1963/983 (1000 Genomes)
A=0.2341/29397 (TOPMED)
HGVS Names
  • CM000683.2:g.21751769A>G
  • NC_000021.8:g.23124089A>G
  • NC_000021.9:g.21751769A>G
  • NR_109958.1:n.349+3085A>G
  • XR_244296.1:n.349+3085A>G
Links , Linkout
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss283493334 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs1735970 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss2577087SC_JCM|AF241725.1_158895fwd/TA/Gaacctctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtcttattga11/03/0010/10/0389Genomicunknown
ss4003227PERLEGEN|P00198837byFreqfwd/TA/Gaacctctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtcttattga09/26/0104/07/04100Genomicunknown
ss14162478BCM_SSAHASNP|chr21.NT_011512.9_8785960byFreqfwd/TA/Gaacctctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtcttattga11/05/0304/07/04119Genomicunknown
ss14440467WUGSC_SSAHASNP|chr21.NT_011512.9_8785960fwd/TA/Gaacctctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtcttattga11/05/0311/22/03119Genomicunknown
ss16911709CSHL-HAPMAP|CSHL-HuAA-200402.chr21.NT_011512.9_8785960fwd/TA/Gaacctctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtcttattga02/17/0403/04/04120Genomicunknown
ss17708660CSHL-HAPMAP|CSHL-HuCC-200402.chr21.NT_011512.9_8785960fwd/TA/Gaacctctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtcttattga02/19/0403/04/04120Genomicunknown
ss21805388SSAHASNP|WGSA-200403-chr21.chr21.NT_011512.9_8785960fwd/TA/Gaacctctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtcttattga03/20/0403/20/04121Genomicunknown
ss24559218PERLEGEN|afd0026824byFreqfwd/TA/Gaacctctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtcttattga08/10/0409/13/04123Genomicunknown
ss41476865ABI|hCV2450992fwd/TA/Gaacctctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtcttattga07/17/0507/17/05126Genomicunknown
ss66673526ILLUMINA|HumanHap300v1.1_rs1735970fwd/BA/Gaacctctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtcttattga11/09/0611/09/06127Genomicunknown
ss67184688ILLUMINA|HumanHap550v1.1_rs1735970fwd/TA/Gaacctctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtcttattga11/14/0611/14/06127Genomicunknown
ss67557484ILLUMINA|HumanHap650Yv1.0_rs1735970fwd/TA/Gaacctctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtcttattga11/14/0611/14/06127Genomicunknown
ss70662741ILLUMINA|HumanHap550v3.0__rs1735970rev/BC/Ttcaataagaccactttaccttcatgggtttgttcacgtatctaaacctataacagaggtt04/20/0703/30/08130Genomicunknown
ss71224156ILLUMINA|HumanHap650Yv3.0_rs1735970fwd/TA/Gaacctctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtcttattga04/23/0704/23/07127Genomicunknown
ss75570910ILLUMINA|ILMN_Human_1M_rs1735970fwd/TA/Gaacctctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtcttattga08/28/0708/29/07129Genomicunknown
ss77606558HGSV|Cor12156_SNV_20070510.chr21_22045960fwd/TA/Gaacctctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtcttattga10/09/0710/13/07129Genomicunknown
ss79090622ILLUMINA|HumanHap300v2.0_rs1735970fwd/TA/Gaacctctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtcttattga04/18/0711/18/07130Genomicunknown
ss83867805KRIBB_YJKIM|KHS560951fwd/TA/Gaacctctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtcttattga12/04/0712/05/07130Genomicunknown
ss91795816BCMHGSC_JDW|JWB-1479554fwd/TA/Gaacctctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtcttattga02/26/0803/02/08129Genomicunknown
ss96159856HUMANGENOME_JCVI|1103643088747fwd/TA/Gaacctctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtcttattga03/25/0803/25/08130Genomicunknown
ss103800886BGI|BGI_rs1735970fwd/TA/Gaacctctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtcttattga06/07/0806/18/09131Genomicunknown
ss1123601001000GENOMES|CEU.trio.12.15.2008_3740304_chr21_22045960fwd/TA/Gaacctctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtcttattga12/17/0812/17/08130Genomicunknown
ss1136979071000GENOMES|NA19240_2008_12_16_3379274_chr21_22045960fwd/TA/Gaacctctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtcttattga12/18/0812/18/08130Genomicunknown
ss117474697ILLUMINA-UK|NA18507_000013851_NCBI36.1_chr21_22045960fwd/TA/Gaacctctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtcttattga01/19/0901/19/09130Genomic99 %
ss121795334ILLUMINA|HumanCNV370v1_C_rs1735970fwd/TA/Gaacctctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtcttattga04/14/0904/14/09131Genomicunknown
ss135635384ENSEMBL|ENSSNP1954825fwd/TA/Gaacctctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtcttattga12/08/0810/14/09131Genomicunknown
ss138295674ENSEMBL|ENSSNP6152121fwd/TA/Gaacctctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtcttattga05/15/0905/17/09131Genomicunknown
ss153670203ILLUMINA|Human610_Quadv1_B_rs1735970-128_B_R_1501686073rev/BC/Ttcaataagaccactttaccttcatgggtttgttcacgtatctaaacctataacagaggtt06/18/0906/19/09131Genomicunknown
ss156757655GMI|GMI_SNP_118925684fwd/TA/Gaacctctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtcttattga06/24/0906/25/09131Genomicunknown
ss159316776ILLUMINA|Human660W-Quad_v1_A_rs1735970-128_B_R_1501686073rev/BC/Ttcaataagaccactttaccttcatgggtttgttcacgtatctaaacctataacagaggtt07/06/0907/06/09131Genomicunknown
ss160440921ILLUMINA|HumanOmni1-Quad_v1-0_B_rs1735970-128_B_R_1501686073rev/BC/Ttcaataagaccactttaccttcatgggtttgttcacgtatctaaacctataacagaggtt08/04/0910/02/09131Genomicunknown
ss169074299COMPLETE_GENOMICS|NA19240_36_chr21_22045960fwd/TA/Gaacctctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtcttattga10/01/0910/01/09132Genomicunknown
ss170777410ILLUMINA|HumanCNV370-Quadv3_C_rs1735970-128_B_R_1501686073rev/BC/Ttcaataagaccactttaccttcatgggtttgttcacgtatctaaacctataacagaggtt10/01/0910/03/09132Genomicunknown
ss171887736COMPLETE_GENOMICS|NA20431_36_chr21_22045960fwd/TA/Gaacctctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtcttattga10/01/0910/01/09132Genomicunknown
ss172816456ILLUMINA|Human1M-Duov3_B_rs1735970-128_B_R_1501686073rev/BC/Ttcaataagaccactttaccttcatgggtttgttcacgtatctaaacctataacagaggtt10/01/0910/02/09132Genomicunknown
ss203975797BUSHMAN|BUSHMAN-chr21-22045959fwd/TA/Gaacctctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtcttattga02/16/1003/10/10132Genomicunknown
ss208786343BCM-HGSC-SUB|BCM_CMT_1011-3241776fwd/TA/Gaacctctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtcttattga03/15/1003/20/10132Genomicunknown
ss2284926481000GENOMES|pilot_1_YRI_10302331_chr21_22045960fwd/A/Gaacctctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtcttattga04/22/1004/22/10132Genomicunknown
ss2379314231000GENOMES|pilot_1_CEU_7536052_chr21_22045960fwd/A/Gaacctctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtcttattga05/01/1005/01/10132Genomicunknown
ss2440811101000GENOMES|pilot_1_CHB+JPT_5966187_chr21_22045960fwd/A/Gaacctctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtcttattga05/01/1005/01/10132Genomicunknown
ss255874150BL|SNP16438_21_22045960fwd/TA/Gaacctctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtcttattga08/20/1008/20/10134Genomicunknown
ss283493334GMI|GMI_AK_SNP_7813755fwd/A/Gaacctctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtcttattga12/16/1012/16/10137Genomicunknown
ss287507553GMI|GMI_NA10851_SNP_3520344fwd/A/Gaacctctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtcttattga12/17/1012/17/10138Genomicunknown
ss292687497PJP|SNP_2193855_chr21_22045960fwd/A/Gaacctctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtcttattga01/21/1101/21/11134Genomicunknown
ss480232422ILLUMINA|HumanOmni2.5-4v1_B_rs1735970-128_B_R_1772813155fwd/TA/Gctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtctt01/30/1210/28/16137Genomicunknown
ss480243170ILLUMINA|HumanOmniExpress-12v1_C_rs1735970-131_B_R_1856961730fwd/TA/Gctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtctt01/30/1210/27/16137Genomicunknown
ss480979842ILLUMINA|HumanOmni1-Quad_v1-0_C_rs1735970-131_B_R_1865221030fwd/TA/Gctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtctt01/30/1208/28/15146Genomicunknown
ss484914229ILLUMINA|HumanOmni2.5-4v1_D_rs1735970-131_B_R_1856961730fwd/TA/Gctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtctt01/30/1210/28/16137Genomicunknown
ss536965907ILLUMINA|HumanOmni5-4v1_B_rs1735970-131_B_R_1891283603fwd/TA/Gctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtctt06/22/1208/29/15146Genomicunknown
ss566414180TISHKOFF|snp_chr21_23124089fwd/TA/Gctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtctt11/22/1211/23/12138Genomicunknown
ss662324807SSMP|21_23124089fwd/TA/Gctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtctt12/14/1202/14/15138Genomicunknown
ss778460326ILLUMINA|HumanOmni25Exome-8v1_A_rs1735970-131_B_R_1865221030fwd/TA/Gctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtctt05/30/1307/10/15146Genomicunknown
ss782903424ILLUMINA|HumanOmni2.5-4v1_H_rs1735970-131_B_R_1856961730fwd/TA/Gctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtctt05/30/1307/29/15146Genomicunknown
ss783866741ILLUMINA|HumanOmniExpressExome-8v1_A_rs1735970-131_B_R_1891283603fwd/TA/Gctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtctt05/31/1306/19/15146Genomicunknown
ss825421140ILLUMINA|HumanCNV370v1_C_rs1735970-126_B_R_IFB1135791159:0fwd/TA/Gctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtctt06/24/1311/21/14144Genomicunknown
ss832158253ILLUMINA|HumanOmniExpress-12v1_H_rs1735970-131_B_R_1856961730fwd/TA/Gctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtctt09/17/1306/18/15146Genomicunknown
ss833916027ILLUMINA|HumanOmni2.5-8v1_A_rs1735970-131_B_R_1865221030fwd/TA/Gctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtctt09/18/1307/29/15146Genomicunknown
ss994990921EVA-GONL|EVA-GONL_rs1735970fwd/TA/Gctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtctt04/23/1405/01/14142Genomicunknown
ss1082398214JMKIDD_LAB|HGDP_WGS_chr21_23124089fwd/TA/Gctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtctt07/10/1407/12/14142Genomicunknown
ss13658150221000GENOMES|PHASE3_V1_79646548fwd/A/Gctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtctt08/16/1408/16/14142Genomicunknown
ss1397776277HAMMER_LAB|HAMMER_LAB_rs1735970fwd/TA/Gctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtctt09/30/1407/15/15146Genomicunknown
ss1429145388DDI|DDI_rs1735970fwd/TA/Gctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtctt11/04/1411/04/14144Genomicunknown
ss1579611486EVA_GENOME_DK|EVA_GENOME_DK_snv_rs1735970fwd/TA/Gctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtctt02/19/1502/20/15144Genomicunknown
ss1639307856EVA_UK10K_ALSPAC|EVA_UK10K_ALSPAC_21_23124089_43888398fwd/A/Gctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtctt03/04/1503/04/15144Genomicunknown
ss1682301889EVA_UK10K_TWINSUK|EVA_UK10K_TWINSUK_21_23124089_43888398fwd/A/Gctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtctt03/04/1503/04/15144Genomicunknown
ss1699055620EVA_DECODE|EVA_DECODE_21_22045960_75667_rs1735970fwd/TA/Gctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtctt03/02/1503/05/15144Genomicunknown
ss1713713817EVA_SVP|EVA_SVP_1407896fwd/TA/Gctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtctt03/12/1503/12/15144Genomicunknown
ss1752402313ILLUMINA|OmniExpressExome-8v1-1_B_rs1735970-131_B_R_1891283603fwd/TA/Gctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtctt05/27/1506/09/15146Genomicunknown
ss1809626511HAMMER_LAB|Hsieh_8657795fwd/TA/Gctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtctt07/15/1507/16/15146Genomicunknown
ss1938542496WEILL_CORNELL_DGM|SNV:chr21:23124089fwd/TA/Gctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtctt10/16/1510/19/15147Genomicunknown
ss1946559225ILLUMINA|HumanCoreExome-12v1-0_C_rs1735970-131_B_R_1891283603fwd/TA/Gctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtctt10/29/1510/29/15147Genomicunknown
ss1959943115ILLUMINA|rs1735970-131_B_R_1891283603fwd/TA/Gctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtctt11/13/1511/13/15147Genomicunknown
ss1969193403GENOMED|rs1735970fwd/TA/Gctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtctt02/16/1602/16/16147Genomicunknown
ss2030041031JJLAB|SNP10543586fwd/TA/Gctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtctt08/29/1608/31/16149Genomicunknown
ss2158641498USC_VALOUEV|NC_000021.8:g.23124089A>Gfwd/A/Gctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtctt11/17/1611/17/16150Genomicunknown
ss2244817087HUMAN_LONGEVITY|HLI-21-21751769-A-Gfwd/A/Gctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtctt11/18/1611/18/16150Genomicunknown
ss2411433838TOPMED|21_23124089_A/Gfwd/A/Gctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtctt11/19/1611/19/16150Genomicunknown
ss2629518328SYSTEMSBIOZJU|SYSTEMSBIOZJU_SNV6725854fwd/A/Gctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtctt01/06/1701/06/17151Genomicunknown
ss2633833287ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_rs1735970-131_B_R_18912836fwd/A/Gctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtctt02/02/1702/02/17151Genomicunknown
ss2704368024GRF|rs1735970fwd/A/Gctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtctt02/13/1702/13/17151Genomicunknown
ss2710947635ILLUMINA|Consortium-OncoArray_15047405_A_rs1735970-131_B_R_1891283603fwd/A/Gctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtctt03/22/1703/22/17151Genomicunknown
ss2970485630GNOMAD|rs1735970fwd/A/Gctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtctt05/23/1705/23/17151Genomicunknown
ss3018699945SWEGEN|NC_000021.8:g.23124089A>Gfwd/A/Gctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtctt05/30/1705/30/17151Genomicunknown
ss3022148164ILLUMINA|MEGA_Consortium_v2_15070954_A2_rs1735970-138_B_R_2276462181fwd/A/Gctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtctt06/28/1706/28/17151Genomicunknown
ss3028856535BIOINF_KMB_FNS_UNIBA|21.21751769A>Gfwd/A/Gctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtctt07/05/1707/05/17151Genomicunknown
ss3352660709CSHL|rs1735970fwd/A/Gctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtctt10/02/1710/02/17151Genomicunknown
ss3367796066TOPMED|TOPMed_freeze_5?chr21:21,751,769fwd/A/Gctgttataggtttagatacgtgaacaaacccatgaaggtaaagtggtctt10/03/1710/03/17151Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs1735970|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='A/G'|mol=Genomic|build=151
 TTGAACAGCC ATTAGGCGAA GCACTTTCTC TATCAACTGT GCTAAGCATT TTCTATAGAG
 TAACTCATTT AATATTCTCA GCAACTCTTG AGGTAGGTGA GATTTTACCC TGTTATATAA
 ATGAGAAACC TTAGGTTCAA AAAAATTAAG CCACTTCCTC ACGTTATTCA GATGATGAGT
 GTGAGCTATA ATTCCCATGG AGAGCTTGCT CTCCCAGGCC CCCTAGTAGA CAGCATGATA
 TGAAGGAGAA AAATTAGGCA GGCAGCAAAT GTTAGCTCTT TCCCTGACTG TTACAGTGGC
 TTTTGAACTT TGGCAGGTCA CCAGTATCTG AAGAACTTCT TGAAATGTGG ATTGCTGGGC
 TTTTCCCCCA GGTTTCTGAT TAATTAAGAC TGGAAGAAGG CCCCAAATGA ACATTTCTAG
 CAAGTTCCCA GGTGACACTG CTGCATCTTG TCCAAGGCTC ACACTTTGAG AACCTCTGTT
 ATAGGTTTAG ATACGTGAAC
 R
 AAACCCATGA AGGTAAAGTG GTCTTATTGA AGGAAGTGTC GGCACTATTT ATACTTGGAT
 AAGGGCATGT GATCATCTAA TTTGATCATA TCTATTCACA CAGTTACGAC CACTTCTGTA
 TACATAAATA TAATATAAAG ATGAAATATA TGGTGCTTGT TGTTAAGAAC CTTAAAATCT
 GGAGAATGAA GGCAAATCTA TAAGCAAATA AGGCACCAAA GCTTATACAT GTTTTGCAAA
 AAGGCAAAAA TGTATATATG GCATAAAAAC AAAGTATAAA TTTTCTACTT GAATTGGAGT
 ATGCAGTGGG GAGTAAGATA GAAAAGTTAG ATAGAGAATT TGATGTCTTA GCTAAATGCT
 GAAAACCAAG AAGATTTGCA CTAATCACTA ATCACATAGA ACAAGGGCTT AGGATAAAGT
 GTGGGATGGA GGGAGAATGA TGTTATAGAT AGTGAAGAAT GTGAAAGCAC CAGATTAACA
 TAGTCATGTA TTTAACTAAA

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_011512 ABBA01057163 AF236874 AP000475
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) . See additional population frequency from 1000Genome [here] back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceA/A
A/G
G/G
HWPA
G
ss117474697YRI 2IG 1.00000000 1.00000000
ss135635384ENSEMBL_Venter 2IG 1.00000000 0.500000000.50000000
ENSEMBL_celera 4IG 1.00000000 1.00000000
ss1365815022EAS 1008AF 0.145799990.85420001
EUR 1006AF 0.295199990.70480001
AFR 1322AF 0.118800010.88120002
AMR 694AF 0.283899990.71609998
SAS 978AF 0.189200000.81080002
ss138295674ENSEMBL_Watson 2IG 1.00000000 1.00000000
ss14162478HapMap-CEUEuropean 226IG0.123893800.336283180.539823000.050043000.292035400.70796460
HapMap-HCBAsian 86IG0.023255810.186046510.790697690.583882000.116279070.88372093
HapMap-JPTAsian 172IG 0.162790700.837209280.751830000.081395350.91860467
HapMap-YRISub-Saharan African 226IG 0.168141590.831858400.751830000.084070790.91592920
HAPMAP-ASW 98IG0.040816330.244897960.714285730.479500000.163265300.83673471
HAPMAP-CHBAsian 82IG 0.243902440.756097560.751830000.121951220.87804878
HAPMAP-CHD 170IG0.011764710.223529410.764705901.000000000.123529410.87647057
HAPMAP-GIH 176IG0.034090910.306818190.659090941.000000000.187500000.81250000
HAPMAP-LWK 180IG0.022222220.155555560.822222230.200325000.100000000.89999998
HAPMAP-MEX 100IG0.100000000.319999990.579999980.250592000.259999990.74000001
HAPMAP-MKK 286IG0.013986010.293706300.692307710.294266000.160839160.83916086
HAPMAP-TSI 176IG0.147727270.397727280.454545470.254213000.346590910.65340906
ss169074299YRISub-Saharan African 2IG 1.00000000 0.500000000.50000000
ss171887736PGP 2IG 1.00000000 0.500000000.50000000
ss228492648pilot_1_YRI_low_coverage_panel 118AF 0.110169490.88983053
ss237931423pilot_1_CEU_low_coverage_panel 120AF 0.316666660.68333334
ss244081110pilot_1_CHB+JPT_low_coverage_panel 120AF 0.108333330.89166665
ss24559218AFD_EUR_PANELEuropean 46IG0.173913050.478260870.347826091.000000000.413043470.58695650
AFD_AFR_PANELAfrican American 46IG0.043478260.260869560.695652190.751830000.173913050.82608694
AFD_CHN_PANELAsian 46IG 0.217391300.782608691.000000000.108695650.89130437
ss4003227NCBI|NIHPDR 20AF 0.300000010.69999999
ss96159856J. Craig Venter 2IG 1.00000000 0.500000000.50000000

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
Additional Freq. Data
0.316+/-0.2410000ALFRED: The Allele Frequency Database

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqbySubmitterwithHapMapFreqWith1000GenomeData
Validated by: PERLEGEN
UNKNOWNUNKNOWNUNKNOWN

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