NCBI
dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Re-designed RefSNP Report page!
Clean, modern design that makes it easy to find the information that you are looking for. Report any problems by sending us an email.
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Reference SNP (refSNP) Cluster Report: rs1541160                 **Clinical Channel**
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:88/151
Map to Genome Build:108/Weight 1
Validation Status:byClusterbyFreqwith2hitWith1000GenomeData
Citation:PubMedLitVarNEW
Association:NHGRI GWAS PheGenI
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:A/G/T (REV)
Allele Origin:
Ancestral Allele:A
Variation Viewer:link to VariationViewer
Clinical Significance:NA
MAF/MinorAlleleCount:C=0.1456/729 (1000 Genomes)
C=0.2239/28116 (TOPMED)
HGVS Names
  • CM000663.2:g.170026661C>A
  • CM000663.2:g.170026661C>T
  • NC_000001.10:g.169995802C>T
  • NC_000001.11:g.170026661C>A
  • NC_000001.11:g.170026661C>T
  • NG_012883.2:g.53078G>A
  • NG_012883.2:g.53078G>T
  • NM_001204514.1:c.608-2065G>A
  • NM_001204514.1:c.608-2065G>T
  • NM_001204516.1:c.710-2065G>A
  • NM_001204516.1:c.710-2065G>T
  • NM_001204517.1:c.722-2065G>A
  • NM_001204517.1:c.722-2065G>T
  • NM_014970.3:c.842-2065G>A
  • NM_014970.3:c.842-2065G>T
Links , Linkout
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss11345365 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs1541160 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss2383000TSC-CSHL|TSC0418964fwd/TA/Gattcctatgctccaatcaatactcaactcatatttgagggagacctctgttagaactcca10/20/0010/10/0388Genomic95 %
ss5835099SC_JCM|NT_034405.1_695899rev/BC/Ttggagttctaacagaggtctccctcaaatatgagttgagtattgattggagcataggaat01/10/0310/10/03111Genomicunknown
ss11345365WI_SSAHASNP|chr1.NT_004668.15_16366361byFreqrev/BC/Ttggagttctaacagaggtctccctcaaatatgagttgagtattgattggagcataggaat07/03/0310/25/06116Genomicunknown
ss20440668SSAHASNP|WGSA-200403-chr1.chr1.NT_004668.16_8501274rev/BC/Ttggagttctaacagaggtctccctcaaatatgagttgagtattgattggagcataggaat03/18/0403/18/04121Genomicunknown
ss44129402ABI|hCV8697056rev/BC/Ttggagttctaacagaggtctccctcaaatatgagttgagtattgattggagcataggaat07/18/0507/18/05126Genomicunknown
ss66576922ILLUMINA|HumanHap300v1.1_rs1541160fwd/BA/Gattcctatgctccaatcaatactcaactcatatttgagggagacctctgttagaactcca11/09/0611/09/06127Genomicunknown
ss67128794ILLUMINA|HumanHap550v1.1_rs1541160fwd/TA/Gattcctatgctccaatcaatactcaactcatatttgagggagacctctgttagaactcca11/14/0611/14/06127Genomicunknown
ss67468181ILLUMINA|HumanHap650Yv1.0_rs1541160fwd/TA/Gattcctatgctccaatcaatactcaactcatatttgagggagacctctgttagaactcca11/14/0611/14/06127Genomicunknown
ss70441572ILLUMINA|HumanHap300v2.0_rs1541160fwd/TA/Gattcctatgctccaatcaatactcaactcatatttgagggagacctctgttagaactcca04/18/0711/18/07127Genomicunknown
ss70630332ILLUMINA|HumanHap550v3.0__rs1541160rev/BC/Ttggagttctaacagaggtctccctcaaatatgagttgagtattgattggagcataggaat04/20/0703/30/08130Genomicunknown
ss71180284ILLUMINA|HumanHap650Yv3.0_rs1541160fwd/TA/Gattcctatgctccaatcaatactcaactcatatttgagggagacctctgttagaactcca04/23/0704/23/07127Genomicunknown
ss74946109ILLUMINA|ILMN_Human_1M_rs1541160fwd/TA/Gattcctatgctccaatcaatactcaactcatatttgagggagacctctgttagaactcca08/28/0708/29/07129Genomicunknown
ss83824860KRIBB_YJKIM|KHS551809fwd/TA/Gattcctatgctccaatcaatactcaactcatatttgagggagacctctgttagaactcca12/04/0712/05/07130Genomicunknown
ss87864253BCMHGSC_JDW|JWB-0143479rev/BC/Ttggagttctaacagaggtctccctcaaatatgagttgagtattgattggagcataggaat02/26/0802/26/08129Genomicunknown
ss97983227HUMANGENOME_JCVI|1103675257785rev/BC/Ttggagttctaacagaggtctccctcaaatatgagttgagtattgattggagcataggaat03/30/0803/30/08130Genomicunknown
ss106610328BGI|BGI_rs1541160rev/BC/Ttggagttctaacagaggtctccctcaaatatgagttgagtattgattggagcataggaat09/16/0806/16/09130Genomicunknown
ss1086884891000GENOMES|CEU.trio.12.15.2008_184028_chr1_168262426rev/BC/Ttggagttctaacagaggtctccctcaaatatgagttgagtattgattggagcataggaat12/16/0812/16/08130Genomicunknown
ss1113208421000GENOMES|NA19240_2008_12_16_169037_chr1_168262426rev/BC/Ttggagttctaacagaggtctccctcaaatatgagttgagtattgattggagcataggaat12/17/0812/17/08130Genomicunknown
ss119083684ILLUMINA-UK|NA18507_000167452_NCBI36.1_chr1_168262426rev/BC/Ttggagttctaacagaggtctccctcaaatatgagttgagtattgattggagcataggaat01/21/0901/22/09130Genomic99 %
ss121742885ILLUMINA|HumanCNV370v1_C_rs1541160fwd/TA/Gattcctatgctccaatcaatactcaactcatatttgagggagacctctgttagaactcca04/14/0904/14/09131Genomicunknown
ss138101920ENSEMBL|ENSSNP5902069rev/BC/Ttggagttctaacagaggtctccctcaaatatgagttgagtattgattggagcataggaat05/15/0905/17/09131Genomicunknown
ss139173211ENSEMBL|ENSSNP90322rev/BC/Ttggagttctaacagaggtctccctcaaatatgagttgagtattgattggagcataggaat12/08/0810/16/09131Genomicunknown
ss153502496ILLUMINA|Human610_Quadv1_B_rs1541160-128_B_R_1501675506rev/BC/Ttggagttctaacagaggtctccctcaaatatgagttgagtattgattggagcataggaat06/18/0906/19/09131Genomicunknown
ss155908969GMI|GMI_SNP_36016838rev/BC/Ttggagttctaacagaggtctccctcaaatatgagttgagtattgattggagcataggaat06/24/0906/24/09131Genomicunknown
ss159282525ILLUMINA|Human660W-Quad_v1_A_rs1541160-128_B_R_1501675506rev/BC/Ttggagttctaacagaggtctccctcaaatatgagttgagtattgattggagcataggaat07/06/0907/06/09131Genomicunknown
ss164384306COMPLETE_GENOMICS|NA19240_36_chr1_168262426rev/BC/Ttggagttctaacagaggtctccctcaaatatgagttgagtattgattggagcataggaat09/29/0909/29/09132Genomicunknown
ss165413060COMPLETE_GENOMICS|NA07022_36_chr1_168262426rev/BC/Ttggagttctaacagaggtctccctcaaatatgagttgagtattgattggagcataggaat09/28/0909/30/09132Genomicunknown
ss167262003COMPLETE_GENOMICS|NA20431_36_chr1_168262426rev/BC/Ttggagttctaacagaggtctccctcaaatatgagttgagtattgattggagcataggaat09/30/0909/30/09132Genomicunknown
ss170626363ILLUMINA|HumanCNV370-Quadv3_C_rs1541160-128_B_R_1501675506rev/BC/Ttggagttctaacagaggtctccctcaaatatgagttgagtattgattggagcataggaat10/01/0910/03/09132Genomicunknown
ss172568362ILLUMINA|Human1M-Duov3_B_rs1541160-128_B_R_1501675506rev/BC/Ttggagttctaacagaggtctccctcaaatatgagttgagtattgattggagcataggaat10/01/0910/02/09132Genomicunknown
ss199226997BUSHMAN|BUSHMAN-chr1-168262425rev/BC/Ttggagttctaacagaggtctccctcaaatatgagttgagtattgattggagcataggaat02/16/1003/06/10132Genomicunknown
ss2187101581000GENOMES|pilot_1_YRI_519841_chr1_168262426rev/C/Ttggagttctaacagaggtctccctcaaatatgagttgagtattgattggagcataggaat04/22/1004/22/10132Genomicunknown
ss2307758901000GENOMES|pilot_1_CEU_380519_chr1_168262426rev/C/Ttggagttctaacagaggtctccctcaaatatgagttgagtattgattggagcataggaat05/01/1005/01/10132Genomicunknown
ss2384149351000GENOMES|pilot_1_CHB+JPT_300012_chr1_168262426rev/C/Ttggagttctaacagaggtctccctcaaatatgagttgagtattgattggagcataggaat05/01/1005/01/10132Genomicunknown
ss253595190BL|SNP159074_1_168262426rev/BC/Ttggagttctaacagaggtctccctcaaatatgagttgagtattgattggagcataggaat08/18/1008/18/10134Genomicunknown
ss276096142GMI|GMI_AK_SNP_416309rev/C/Ttggagttctaacagaggtctccctcaaatatgagttgagtattgattggagcataggaat12/16/1012/16/10137Genomicunknown
ss284172853GMI|GMI_NA10851_SNP_185619rev/C/Ttggagttctaacagaggtctccctcaaatatgagttgagtattgattggagcataggaat12/17/1012/17/10138Genomicunknown
ss290660692PJP|SNP_167050_chr1_168262426rev/C/Ttggagttctaacagaggtctccctcaaatatgagttgagtattgattggagcataggaat01/21/1101/21/11134Genomicunknown
ss491305801EXOME_CHIP|.GWAS._22028_chr_1_169995802rev/BC/Ttggagttctaacagaggtctccctcaaatatgagttgagtattgattggagcataggaat03/05/1203/05/12137Genomicunknown
ss536890430ILLUMINA|HumanOmni5-4v1_B_rs1541160-131_B_R_1866536649rev/BC/Tttctaacagaggtctccctcaaatatgagttgagtattgattggagcata06/22/1208/28/15146Genomicunknown
ss554832126TISHKOFF|snp_chr1_169995802rev/BC/Tttctaacagaggtctccctcaaatatgagttgagtattgattggagcata11/22/1211/23/12138Genomicunknown
ss648489598SSMP|1_169995802rev/BC/Tttctaacagaggtctccctcaaatatgagttgagtattgattggagcata12/14/1202/09/15138Genomicunknown
ss780682068ILLUMINA|HumanOmni25Exome-8v1_A_exm-rs1541160-131_B_R_1990479756rev/BC/Tttctaacagaggtctccctcaaatatgagttgagtattgattggagcata05/30/1307/09/15146Genomicunknown
ss783355403ILLUMINA|HumanOmniExpressExome-8v1_A_exm-rs1541160-131_B_R_1990479756rev/BC/Tttctaacagaggtctccctcaaatatgagttgagtattgattggagcata05/31/1306/18/15146Genomicunknown
ss825410556ILLUMINA|HumanCNV370v1_C_rs1541160-126_B_R_IFB1135090616:0rev/BC/Tttctaacagaggtctccctcaaatatgagttgagtattgattggagcata06/24/1311/21/14144Genomicunknown
ss832794658ILLUMINA|Human660W-Quad_v1_C_rs1541160-131_B_R_1852847963rev/BC/Tttctaacagaggtctccctcaaatatgagttgagtattgattggagcata09/18/1307/02/15142Genomicunknown
ss833385488ILLUMINA|Human660W-Quad_v1_H_rs1541160-131_B_R_1852847963rev/BC/Tttctaacagaggtctccctcaaatatgagttgagtattgattggagcata09/18/1307/02/15142Genomicunknown
ss975798467EVA-GONL|EVA-GONL_rs1541160rev/BC/Tttctaacagaggtctccctcaaatatgagttgagtattgattggagcata04/23/1404/23/14142Genomicunknown
ss1068353675JMKIDD_LAB|HGDP_WGS_chr1_169995802rev/BC/Tttctaacagaggtctccctcaaatatgagttgagtattgattggagcata07/10/1407/10/14142Genomicunknown
ss12933619851000GENOMES|PHASE3_V1_4189661rev/C/Tttctaacagaggtctccctcaaatatgagttgagtattgattggagcata08/16/1408/16/14142Genomicunknown
ss1426013403DDI|DDI_rs1541160rev/BC/Tttctaacagaggtctccctcaaatatgagttgagtattgattggagcata11/04/1411/04/14144Genomicunknown
ss1574466535EVA_GENOME_DK|EVA_GENOME_DK_snv_rs1541160rev/BC/Tttctaacagaggtctccctcaaatatgagttgagtattgattggagcata02/19/1502/19/15144Genomicunknown
ss1585184164EVA_DECODE|EVA_DECODE_1_168262426_1054919_rs1541160rev/BC/Tttctaacagaggtctccctcaaatatgagttgagtattgattggagcata03/02/1503/02/15144Genomicunknown
ss1601447041EVA_UK10K_ALSPAC|EVA_UK10K_ALSPAC_1_169995802_2276760rev/C/Tttctaacagaggtctccctcaaatatgagttgagtattgattggagcata03/04/1503/04/15144Genomicunknown
ss1644441074EVA_UK10K_TWINSUK|EVA_UK10K_TWINSUK_1_169995802_2276760rev/C/Tttctaacagaggtctccctcaaatatgagttgagtattgattggagcata03/04/1503/04/15144Genomicunknown
ss1712380505EVA_SVP|EVA_SVP_75057rev/BC/Tttctaacagaggtctccctcaaatatgagttgagtattgattggagcata03/12/1503/12/15144Genomicunknown
ss1751880696ILLUMINA|OmniExpressExome-8v1-1_B_exm-rs1541160-131_B_R_1990479756rev/BC/Tttctaacagaggtctccctcaaatatgagttgagtattgattggagcata05/27/1506/09/15146Genomicunknown
ss1795250196HAMMER_LAB|Hsieh_438355rev/BC/Tttctaacagaggtctccctcaaatatgagttgagtattgattggagcata07/15/1507/15/15146Genomicunknown
ss1917738258ILLUMINA|HumanExome-12v1-1_B_exm-rs1541160-131_B_R_1990479756rev/BC/Tttctaacagaggtctccctcaaatatgagttgagtattgattggagcata10/16/1510/16/15147Genomicunknown
ss1919034956WEILL_CORNELL_DGM|SNV:chr1:169995802rev/BC/Tttctaacagaggtctccctcaaatatgagttgagtattgattggagcata10/16/1510/16/15147Genomicunknown
ss1946014469ILLUMINA|HumanCoreExome-12v1-0_C_exm-rs1541160-131_B_R_1990479756rev/BC/Tttctaacagaggtctccctcaaatatgagttgagtattgattggagcata10/29/1510/29/15147Genomicunknown
ss1958331068ILLUMINA|exm-rs1541160-131_B_R_1990479756rev/BC/Tttctaacagaggtctccctcaaatatgagttgagtattgattggagcata11/13/1511/13/15147Genomicunknown
ss1966895277GENOMED|rs1541160rev/BC/Tttctaacagaggtctccctcaaatatgagttgagtattgattggagcata02/16/1602/16/16147Genomicunknown
ss2020033520JJLAB|SNP536075rev/BC/Tttctaacagaggtctccctcaaatatgagttgagtattgattggagcata08/29/1608/30/16149Genomicunknown
ss2094785100ILLUMINA|Immuno_BeadChip_11419691_B_rs1541160-131_B_R_1866536649rev/BC/Tttctaacagaggtctccctcaaatatgagttgagtattgattggagcata09/27/1609/27/16150Genomicunknown
ss2094982182ILLUMINA|InfiniumImmunoArray-24v2-0_A_rs1541160-131_B_R_1866536649rev/BC/Tttctaacagaggtctccctcaaatatgagttgagtattgattggagcata09/27/1609/27/16150Genomicunknown
ss2136661768CSHL|rs1541160rev/BC/Tttctaacagaggtctccctcaaatatgagttgagtattgattggagcata12/02/1612/02/16151Genomicunknown
ss2148061058USC_VALOUEV|NC_000001.10:g.169995802C>Trev/C/Tttctaacagaggtctccctcaaatatgagttgagtattgattggagcata11/17/1611/17/16150Genomicunknown
ss2167415757HUMAN_LONGEVITY|HLI-1-170026661-C-Trev/C/Tttctaacagaggtctccctcaaatatgagttgagtattgattggagcata11/18/1611/18/16150Genomicunknown
ss2329955114TOPMED|1_169995802_C/Trev/C/Tttctaacagaggtctccctcaaatatgagttgagtattgattggagcata11/19/1611/19/16150Genomicunknown
ss2624525981SYSTEMSBIOZJU|SYSTEMSBIOZJU_SNV339521rev/C/Tttctaacagaggtctccctcaaatatgagttgagtattgattggagcata01/06/1701/06/17151Genomicunknown
ss2632591252ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_seq-rs1541160-131_B_R_2130rev/C/Tttctaacagaggtctccctcaaatatgagttgagtattgattggagcata02/02/1702/02/17151Genomicunknown
ss2698039184GRF|rs1541160rev/C/Tttctaacagaggtctccctcaaatatgagttgagtattgattggagcata02/13/1702/13/17151Genomicunknown
ss2762540464GNOMAD|rs1541160rev/C/Tttctaacagaggtctccctcaaatatgagttgagtattgattggagcata05/17/1705/17/17151Genomicunknown
ss2984884928AFFY|Axiom_PsorMich_Affx-5769994rev/C/Tttctaacagaggtctccctcaaatatgagttgagtattgattggagcata05/24/1705/24/17151Genomicunknown
ss2985530075AFFY|Axiom_Smokesc1_Affx-5769994rev/C/Tttctaacagaggtctccctcaaatatgagttgagtattgattggagcata05/24/1705/24/17151Genomicunknown
ss2987929699SWEGEN|NC_000001.10:g.169995802C>Trev/C/Tttctaacagaggtctccctcaaatatgagttgagtattgattggagcata05/30/1705/30/17151Genomicunknown
ss3021150308ILLUMINA|MEGA_Consortium_v2_15070954_A2_exm-rs1541160-131_B_R_1990479756rev/C/Tttctaacagaggtctccctcaaatatgagttgagtattgattggagcata06/28/1706/28/17151Genomicunknown
ss3023775078BIOINF_KMB_FNS_UNIBA|1.170026661C>Trev/C/Tttctaacagaggtctccctcaaatatgagttgagtattgattggagcata07/05/1707/05/17151Genomicunknown
ss3094946428TOPMED|TOPMed_freeze_5?chr1:170,026,661-01rev/A/Cttctaacagaggtctccctcaaatatgagttgagtattgattggagcata09/28/1709/28/17151Genomicunknown
ss3094946429TOPMED|TOPMed_freeze_5?chr1:170,026,661-02rev/C/Tttctaacagaggtctccctcaaatatgagttgagtattgattggagcata09/28/1709/28/17151Genomicunknown
ss3343763048CSHL|rs1541160rev/C/Tttctaacagaggtctccctcaaatatgagttgagtattgattggagcata10/02/1710/02/17151Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs1541160|allelePos=4350|totalLen=5558|taxid=9606|snpclass=1|alleles='A/G/T'|mol=Genomic|build=151
 CAAATATTTA TGCAAATATT GTATACTCTC TTAACAGCtt tattgaggta taactgatag
 acaataaact gtatagtttt aaagtatata atttgataaa ttttaacata tgtaaatacc
 catgaaataa tgaccataat caagataagg tacatatcca tcactcccaa aatttcctca
 tgcatcttta caatctctcc ctttccttct tccttctgcc ttcttcctca ttcccaagtc
 atcactgatc tgctttctgt cactttagct tagtttgcat tttctagagt tttatataaa
 tgaaatcata tagtatgtat gcatttttgt cttttactca gcataattaa agattcatcc
 atattattgc atttatcaat agtttattcc tttttgttat tgaatagtat ttccttatat
 tcacctgttg atgatcatta gaatatttcc agtttttggc aattttaatg ctgctgtgaa
 catttttcta caagtctttg tatggacata cgctttcttt tctcttagtt aaatacctaa
 tgatggaatg gctgagtcat aggataggtg tatgtttaac tttgtaagaa actgccaaat
 gtttttctat aatagttgtt tttatattct caccatgaat gtatgtggtt ttgatttgaa
 tttccctagt gactgattaa tgttgagcat ctcctgatgt gcttatctgc catctcttta
 tgtttattga agtgtgcctt cataactttt gccttattat taaattggat agtttTGTAT
 CCATTCTTTA TATGTTTTGG ATATAAGCAT TTATCAGATA CATGATTTGC AGAAAttttt
 gttctcctaa agtatctttt taagagcaga attttacatt tttatgaatt ccaacttagt
 gttttttgga tcatggtttt ggtattgtgt ctaagaaatc ctttcctaac taaaggttac
 aattattttc taatatgttt tcttctagaa gttgtatagt ctcagagttt agttaaggct
 ataatatatt ttgagttaat ttttgtatat ggggtgagga atggatcaaa gttcttcatt
 ctttttgcat ataaatagct aattatttaa gtactacttt tgaaaacact atcttttatc
 tactgaattg atttatatct ttgtcagaac catttgtcca atgtgtcatg cctatttttg
 ggtttctatt ttgttctatc catcactttt gtgtgttttt gatgccaata gcacagtgtc
 ttcattacca tagcttatgg aaaatgttga tattgggtgc ttttagccct accaattttt
 tattccattg atttctactt tgatctttat aatttttttt cttcagctta ctttgggttt
 aatatactct tattttttgt tgttgttgtt gttgttgttg ttgtttaagt ggaagctgag
 gtcatttact caagaccttt cttctcaaat acagatattt agtgctataa atttcccatt
 aagcacttct ttgatggcat cccacagatt ttcatatgtc ctgttttcat tttcattcag
 tttaaatact ttccagtttc tcttttggtt tcttttttgg cccttgggtt atttagaagg
 gagttatttt tttcccaaat aattgatgtt caaggcttta catgtgttga tgcttttctg
 tactttttct attattgaga gagtaatatt gaaatctctg actataattg tgatttattt
 attgctcctg cacatctatc agttttcagt acatgtattt ttgaagctct gtattcttgg
 ggacataaag atataggatg tagatgtgct attgatgaat tgtccttgtt atcagtatga
 agtgttcttc atcatggctg gtaacatttt ttggtctgaa atctaccttt tcttatgtta
 atctacttct tcttgtgact agtgttagta tgggatatat ttgtctatcc ttttattttt
 aatatattta tgtctatatt aagtgtgttt ttttatgaac agcatttaga ttggctttgc
 atgtttGTGT GAGtatgtgt cttcttcctc ctttttcctt cttgtctgcc ttcttacgta
 tttgagattt tttaaattct attttatttc cattgttagc ttagctataa gtcttttgtt
 attttattga ttgctttaag gtttatatta tacatcttta atcatagttg tctacctaca
 agtgatacat gcttaactta tcataagtta actctgctgt caagtatttt gtgccatttc
 atgcttagtg ttgcaatcat ttcttccctc tcccaactct atgctattac taacatttat
 tatacttata catatgttat aaaccctata ataaggccag atgtcgtggc tcacacctgt
 aatcccagca ttctgggagg cctaggtggg cagatcactt gaggtcagga gtttgagacc
 agcctgggca acatggggaa accctgtctc caccaaaaaa caaaaattag ctgggtgtgg
 tggcacacgc ctgtagtccc cagctactca ggaggctgag gcaggagaat cacttgaacc
 tgggagcgga ggttgcaatg agccaagatc gcaccattgc actccagtca ggtgacagag
 cgagactccg tctcagaaaa aaaagccaaa aacaaacaaa caaaaaactg tataacacat
 tatcatttta tatacataat tttattttaa agatatattt aataagaaaa taatcttata
 tatttccttg tagagttacc atttccattg atattattcc tttgtgtaga tccatatttc
 tgtgtgctgt cattttcttt ttgcctgagc aatttacttt aacgtttctt gtaggacata
 tttaccagtg gttaattatc ttttgtgtgt ctaaaaaagt ctcattttaa aaatattttt
 atctttttga aatattttca ctgggtttag aactctaggt tgacaacttt ttttaatact
 gtaaggatgt tgctccactg ttgccttgtt tgcattgttt ttgatgagaa gtctgctgtc
 atgctatctt tgtctatata ttaatataag gtctcttttt cttggactgc ttttaagatt
 gtctcttcat cattcgtttt gagcaattta ttataccggg ccttggtgta attttttttt
 ctgtttcttg tttttagagt ttagtgagct tattgaaact ctgggtttat aattttcact
 aaatttggaa atgtttctgt tattattttt tcagggactt cagttaaaca tatattaggc
 cactcgaagt tgttccacag ttctctgata ctctacattt ttgtcatgtt tttctgtctg
 tttaattttg gatagtttct gtgattatgt cttcagtttc actaatcttt ttttcttcta
 tctctaaact gctgttaatt tcatctagtt tatagtctca agcattgtag ttttcagtga
 tagaagtttg aatatttttt attatatctc ccttgtctct acttaacttt tagaagatct
 ggaatacagt tatatgacat aatgttccgt ttttataatt aaactctagg tcaattcttg
 gacagttgca attggttcat ttttctcttc cttgtgagtt atattccctg cttcttgtat
 gactgaaaat ctttgattag aagcaagaca gggtcaggcg cggtggttca tgcctgtaat
 cccagcactt tgggaggcca aggcaggcag atcacctggg gtcaggagtt cgagaccagc
 ctgaccaaca tggtgaaacc ccatctctac taaaaataca aaattagcca ggcgttggtg
 gtggatgcct ataatcccag ctactcagga ggctgaggca ggagaattgt ttgaacccag
 gaggtggagg ttgcagtgag ccaaggtcac gcattgcatt ccagcctggg caacaagagc
 aaaactctgt ctcaaaaaaa aaaaaaaaaa aaaaaagaag caagacagtg aaatttacat
 tgttgtaggt ggactttttt attcctaaaa atatctttga gttttatttg gggacatagt
 taaattactt ggaaacagtt tgatcctttt ggatcttaat cttataattt gttagtctgg
 acagaagcag catttagtat aaagctagtt atttcccact acggaggtaa gacccttctc
 agggctctac ccactaatgc atgaattatg ggattgccag tatggttggt agaagcaggc
 attattttca gctttgtTCT TCTACTCCTC TCATTTTTTT CTGTCCCAGc ctcacttaaa
 ttcctatgct ccaatcaata ctcaactca
 D
 tatttgaggg agacctctgt tagaactcca gagtttctct ctgctcagct ctttcttctt
 cagtactctt ttctgtgaac tctttggcgt ctctggattc ttggcttcat ctccttaact
 cagggattct atcaggttct gcctggattc tccttcactg ttttgtgacc tggaaactct
 caaggcaata ttctagggca aacataggac tatctcattt atttcttatc tctcagggat
 tactgtcctt cattgtctgg tgtccactat tgtgaaaatc tttgttttgt gtatttcagt
 tagatttttt tgtggtgttg tcaggcaaag gtttaaaacc ccatcctatt aattttctgg
 ggtgctataa caaattaccg taaaccgggt ggcttaaaac aacagaaatt tattctgtca
 tagctctgga tgggggaagg ccaaagtcaa ggtatcatca ggcccacgtt ctctctgaag
 gctctggaaa agaatcttct ctcgtctctt tctagctttt ggtgggtccc agcaattctt
 ggtgcttctt ggcttttagc tacatcactc cagtctctgc ctttgtcttc atatggcctt
 cttcccactc tgtcggtctc tgttatgtca cctcctcctc ttcttaagac accactcatt
 ggattcacgg tccaccttaa tccattatta cctcaccata accaattaca tctgcaaaga
 ccctatttcc aaataaggca catcctgagg ttctgggtga acataaattt tagaaggaca
 gtattcaacc GGCTACCTCT ATCTTGGCTG TAAAGAGAAG TCTGTTTGTT TTTTCAATGT
 AATTCTAAAA CCTTTTGACA GTGCCTTGCA TAGAAAGTca gcataatgta atagtgtaaa
 tatatgagct ttggattctg atagacttga attttaattt agcactacca ctttctagct
 gtatggtagg gaaagttgtt taatttcttt gaatcagggg tttccaatct gtaaaatttt
 tataatactt ctttcctcat aaaactgttt tagaatttaa acagccttta tacatcaaca
 ggcctggcat acaataggta cttaataagt gtGATTTAAC TTTCCATCTC taatatttgt
 taaataaata aattttatat ttatCTACTT ATGTATATAC ATATGCATGT ATTTCTTCTT
 TTCATAAG

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_034405.1 ABBA01027945
dbSNP Blast Analysis
OMIM
105400

  Population Diversity (Alleles in RefSNP orientation) . See additional population frequency from 1000Genome [here] Note: rs1541160 allele is reverse to the genome back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceA/A
A/G
G/G
HWPA
G
ss11345365HapMap-CEUEuropean 226IG0.513274310.353982300.132743360.099721000.690265480.30973452
HapMap-HCBAsian 86IG0.976744170.02325581 1.000000000.988372090.01162791
HapMap-JPTAsian 88IG1.00000000 1.00000000
HapMap-YRISub-Saharan African 224IG0.750000000.241071430.008928570.479500000.870535730.12946428
Shanghai Chinese 160GF0.987500010.01250000 1.000000000.993749980.00625000
HAPMAP-ASW 98IG0.571428600.408163280.020408160.250592000.775510190.22448979
HAPMAP-CHBAsian 82IG0.975609780.02439024 1.000000000.987804890.01219512
HAPMAP-GIH 176IG0.727272750.261363630.011363640.527089000.857954560.14204545
HAPMAP-LWK 180IG0.822222230.166666670.011111111.000000000.905555550.09444445
HAPMAP-MEX 100IG0.699999990.280000000.020000001.000000000.839999970.16000000
HAPMAP-MKK 286IG0.832167800.16783217 0.751830000.916083930.08391608
HAPMAP-TSI 176IG0.534090940.409090910.056818180.583882000.738636370.26136363
ss119083684YRI 2IG1.00000000 1.00000000
ss1293361985EAS 1008AF 0.995000000.00500000
EUR 1006AF 0.750499960.24949999
AFR 1322AF 0.838899970.16110000
AMR 694AF 0.814100030.18590000
SAS 978AF 0.866099950.13389999
ss138101920ENSEMBL_Watson 2IG1.00000000 1.00000000
ss139173211ENSEMBL_Venter 2IG1.00000000 1.00000000
ss164384306YRISub-Saharan African 2IG 1.00000000 0.500000000.50000000
ss165413060CEUEuropean 2IG 1.00000000 0.500000000.50000000
ss167262003PGP 2IG1.00000000 1.00000000
ss218710158pilot_1_YRI_low_coverage_panel 118AF 0.864406760.13559322
ss230775890pilot_1_CEU_low_coverage_panel 120AF 0.750000000.25000000
ss238414935pilot_1_CHB+JPT_low_coverage_panel 120AF 0.991666670.00833333
ss97983227J. Craig Venter 2IG1.00000000 1.00000000

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
Additional Freq. Data
0.249+/-0.2500000ALFRED: The Allele Frequency Database

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqwith2hitWith1000GenomeData
DoubleHit found by:  BCM_SSAHASNPNCBI
UNKNOWNUNKNOWNUNKNOWN

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement