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Reference SNP (refSNP) Cluster Report: rs1488902                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:88/151
Map to Genome Build:108/Weight 1
Validation Status:byClusterbyFreqbySubmitterwith2hitwithHapMapFreqWith1000GenomeData
Association:NHGRI GWAS PheGenI
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:C/T (FWD)
Allele Origin:
Ancestral Allele:T
Variation Viewer:link to VariationViewer
Clinical Significance:NA
MAF/MinorAlleleCount:C=0.4048/2027 (1000 Genomes)
C=0.4003/50263 (TOPMED)
HGVS Names
  • CM000673.2:g.89611857T>C
  • NC_000011.9:g.89345025T>C
Links , Linkout
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss281107169 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs1488902 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss2314407TSC-CSHL|TSC0720802byFreqfwd/BC/Tgttcatagggtttgattttgtagagctttgtaaagaagtttagatttaataattttaaat10/20/0004/07/0488Genomic95 %
ss5948697SC_JCM|NT_033240.2_1640723fwd/BC/Tgttcatagggtttgattttgtagagctttgtaaagaagtttagatttaataattttaaat01/10/0310/10/03111Genomicunknown
ss16549608CSHL-HAPMAP|CSHL-HuAA-200402.chr11.NT_008984.16_1606647fwd/BC/Tgttcatagggtttgattttgtagagctttgtaaagaagtttagatttaataattttaaat02/17/0403/04/04120Genomicunknown
ss20763256SSAHASNP|WGSA-200403-chr11.chr11.NT_008984.16_1606647fwd/BC/Tgttcatagggtttgattttgtagagctttgtaaagaagtttagatttaataattttaaat03/19/0403/19/04121Genomicunknown
ss23390878PERLEGEN|afd1724234byFreqfwd/BC/Tgttcatagggtttgattttgtagagctttgtaaagaagtttagatttaataattttaaat08/10/0409/13/04123Genomicunknown
ss65987728AFFY|SNP_A-1657539rev/TA/Gaaattattaaatctaaacttctttacaaagctctacaaaatcaaacccta10/26/0610/26/06127Genomicunknown
ss66112459AFFY|SNP_A-2013330byFreqrev/TA/Gaatctaaacttctttacaaagctctacaaaat10/27/0608/14/07127Genomicunknown
ss66576517ILLUMINA|HumanHap300v1.1_rs1488902fwd/BC/Tgttcatagggtttgattttgtagagctttgtaaagaagtttagatttaataattttaaat11/09/0611/09/06127Genomicunknown
ss67116566ILLUMINA|HumanHap550v1.1_rs1488902fwd/BC/Tgttcatagggtttgattttgtagagctttgtaaagaagtttagatttaataattttaaat11/14/0611/14/06127Genomicunknown
ss67454151ILLUMINA|HumanHap650Yv1.0_rs1488902fwd/BC/Tgttcatagggtttgattttgtagagctttgtaaagaagtttagatttaataattttaaat11/14/0611/14/06127Genomicunknown
ss69324032PERLEGEN|PGP01724234byFreqfwd/BC/Tgttcatagggtttgattttgtagagctttgtaaagaagtttagatttaataattttaaat01/30/0708/14/07127Genomicunknown
ss70436916ILLUMINA|HumanHap300v2.0_rs1488902fwd/BC/Tgttcatagggtttgattttgtagagctttgtaaagaagtttagatttaataattttaaat04/18/0711/18/07127Genomicunknown
ss70624168ILLUMINA|HumanHap550v3.0__rs1488902fwd/BC/Tgttcatagggtttgattttgtagagctttgtaaagaagtttagatttaataattttaaat04/20/0703/30/08130Genomicunknown
ss71173257ILLUMINA|HumanHap650Yv3.0_rs1488902fwd/BC/Tgttcatagggtttgattttgtagagctttgtaaagaagtttagatttaataattttaaat04/23/0704/23/07127Genomicunknown
ss74932760ILLUMINA|ILMN_Human_1M_rs1488902fwd/BC/Tgttcatagggtttgattttgtagagctttgtaaagaagtttagatttaataattttaaat08/28/0708/29/07129Genomicunknown
ss76094332AFFY|AFFY_6_1M_SNP_A-2013330byFreqrev/TA/Gaatctaaacttctttacaaagctctacaaaat08/28/0703/07/10129Genomicunknown
ss80779340HGSV|Cor18507_SNV_20070510.chr11_88984673fwd/BC/Tgttcatagggtttgattttgtagagctttgtaaagaagtttagatttaataattttaaat11/26/0711/26/07130Genomicunknown
ss83799048KRIBB_YJKIM|KHS546098fwd/BC/Tgttcatagggtttgattttgtagagctttgtaaagaagtttagatttaataattttaaat12/04/0712/05/07130Genomicunknown
ss97405393HUMANGENOME_JCVI|1103649750209fwd/BC/Tgttcatagggtttgattttgtagagctttgtaaagaagtttagatttaataattttaaat03/29/0803/29/08130Genomicunknown
ss104799323KRIBB_YJKIM|KHS1103050fwd/BC/Tgttcatagggtttgattttgtagagctttgtaaagaagtttagatttaataattttaaat06/09/0806/09/08130Genomicunknown
ss1108185931000GENOMES|CEU.trio.12.15.2008_2591211_chr11_88984673fwd/BC/Tgttcatagggtttgattttgtagagctttgtaaagaagtttagatttaataattttaaat12/17/0812/17/08130Genomicunknown
ss1149456001000GENOMES|NA19240_2008_12_16_2335974_chr11_88984673fwd/BC/Tgttcatagggtttgattttgtagagctttgtaaagaagtttagatttaataattttaaat12/19/0812/19/08130Genomicunknown
ss119929404ILLUMINA-UK|NA18507_000113970_NCBI36.1_chr11_88984673fwd/BC/Tgttcatagggtttgattttgtagagctttgtaaagaagtttagatttaataattttaaat01/21/0902/06/09131Genomic99 %
ss121719965ILLUMINA|HumanCNV370v1_C_rs1488902fwd/BC/Tgttcatagggtttgattttgtagagctttgtaaagaagtttagatttaataattttaaat04/14/0904/14/09131Genomicunknown
ss132039654ENSEMBL|ENSSNP637223fwd/BC/Tgttcatagggtttgattttgtagagctttgtaaagaagtttagatttaataattttaaat12/08/0810/14/09131Genomicunknown
ss153468932ILLUMINA|Human610_Quadv1_B_rs1488902-128_B_F_1501669486fwd/BC/Tgttcatagggtttgattttgtagagctttgtaaagaagtttagatttaataattttaaat06/18/0906/19/09131Genomicunknown
ss159276164ILLUMINA|Human660W-Quad_v1_A_rs1488902-128_B_F_1501669486fwd/BC/Tgttcatagggtttgattttgtagagctttgtaaagaagtttagatttaataattttaaat07/06/0907/06/09131Genomicunknown
ss160361293ILLUMINA|HumanOmni1-Quad_v1-0_B_rs1488902-128_B_F_1501669486fwd/BC/Tgttcatagggtttgattttgtagagctttgtaaagaagtttagatttaataattttaaat08/04/0910/02/09131Genomicunknown
ss170556294COMPLETE_GENOMICS|NA19240_36_chr11_88984673fwd/BC/Tgttcatagggtttgattttgtagagctttgtaaagaagtttagatttaataattttaaat10/01/0910/01/09132Genomicunknown
ss170567234ILLUMINA|HumanCNV370-Quadv3_C_rs1488902-128_B_F_1501669486fwd/BC/Tgttcatagggtttgattttgtagagctttgtaaagaagtttagatttaataattttaaat10/01/0910/03/09132Genomicunknown
ss172484481AFFY|GenomeWideSNP_5_SNP_A-2013330rev/TA/Gaatctaaacttctttacaaagctctacaaaat10/01/0910/02/09132Genomicunknown
ss172537589ILLUMINA|Human1M-Duov3_B_rs1488902-128_B_F_1501669486fwd/BC/Tgttcatagggtttgattttgtagagctttgtaaagaagtttagatttaataattttaaat10/01/0910/02/09132Genomicunknown
ss175225343COMPLETE_GENOMICS|NA20431_36_chr11_88984673fwd/BC/Tgttcatagggtttgattttgtagagctttgtaaagaagtttagatttaataattttaaat10/01/0910/05/09132Genomicunknown
ss203013864BUSHMAN|BUSHMAN-chr11-88984672fwd/BC/Tgttcatagggtttgattttgtagagctttgtaaagaagtttagatttaataattttaaat02/16/1003/08/10132Genomicunknown
ss2253755661000GENOMES|pilot_1_YRI_7185249_chr11_88984673fwd/C/Tgttcatagggtttgattttgtagagctttgtaaagaagtttagatttaataattttaaat04/22/1004/22/10132Genomicunknown
ss2356554771000GENOMES|pilot_1_CEU_5260106_chr11_88984673fwd/C/Tgttcatagggtttgattttgtagagctttgtaaagaagtttagatttaataattttaaat05/01/1005/01/10132Genomicunknown
ss2422668831000GENOMES|pilot_1_CHB+JPT_4151960_chr11_88984673fwd/C/Tgttcatagggtttgattttgtagagctttgtaaagaagtttagatttaataattttaaat05/01/1005/01/10132Genomicunknown
ss255326863BL|SNP110500_11_88984673fwd/BC/Tgttcatagggtttgattttgtagagctttgtaaagaagtttagatttaataattttaaat08/19/1008/20/10134Genomicunknown
ss281107169GMI|GMI_AK_SNP_5427558fwd/C/Tgttcatagggtttgattttgtagagctttgtaaagaagtttagatttaataattttaaat12/16/1012/16/10137Genomicunknown
ss291094427PJP|SNP_600785_chr11_88984673fwd/C/Tgttcatagggtttgattttgtagagctttgtaaagaagtttagatttaataattttaaat01/21/1101/21/11134Genomicunknown
ss479998903ILLUMINA|HumanOmni2.5-4v1_B_rs1488902-128_B_F_1780600652fwd/BC/Ttagggtttgattttgtagagctttgtaaagaagtttagatttaataattt01/30/1210/28/16137Genomicunknown
ss480007571ILLUMINA|HumanOmniExpress-12v1_C_rs1488902-131_B_F_1857602739fwd/BC/Ttagggtttgattttgtagagctttgtaaagaagtttagatttaataattt01/30/1210/27/16137Genomicunknown
ss480662840ILLUMINA|HumanOmni1-Quad_v1-0_C_rs1488902-131_B_F_1865554369fwd/BC/Ttagggtttgattttgtagagctttgtaaagaagtttagatttaataattt01/30/1208/28/15146Genomicunknown
ss484797538ILLUMINA|HumanOmni2.5-4v1_D_rs1488902-131_B_F_1857602739fwd/BC/Ttagggtttgattttgtagagctttgtaaagaagtttagatttaataattt01/30/1210/27/16137Genomicunknown
ss491457278EXOME_CHIP|.GWAS._173504_chr_11_89345025fwd/BC/Tgttcatagggtttgattttgtagagctttgtaaagaagtttagatttaataattttaaat03/05/1203/05/12137Genomicunknown
ss536880844ILLUMINA|HumanOmni5-4v1_B_rs1488902-131_B_F_1894815583fwd/BC/Ttagggtttgattttgtagagctttgtaaagaagtttagatttaataattt06/22/1208/29/15146Genomicunknown
ss562725425TISHKOFF|snp_chr11_89345025fwd/BC/Ttagggtttgattttgtagagctttgtaaagaagtttagatttaataattt11/22/1211/23/12138Genomicunknown
ss658241019SSMP|11_89345025fwd/BC/Ttagggtttgattttgtagagctttgtaaagaagtttagatttaataattt12/14/1202/13/15138Genomicunknown
ss778434920ILLUMINA|HumanOmni25Exome-8v1_A_rs1488902-131_B_F_1865554369fwd/BC/Ttagggtttgattttgtagagctttgtaaagaagtttagatttaataattt05/30/1307/10/15142Genomicunknown
ss780682004ILLUMINA|HumanOmni25Exome-8v1_A_exm-rs1488902-131_B_F_1990479680fwd/BC/Ttagggtttgattttgtagagctttgtaaagaagtttagatttaataattt05/30/1307/10/15142Genomicunknown
ss782845420ILLUMINA|HumanOmni2.5-4v1_H_rs1488902-131_B_F_1857602739fwd/BC/Ttagggtttgattttgtagagctttgtaaagaagtttagatttaataattt05/30/1307/29/15142Genomicunknown
ss783355337ILLUMINA|HumanOmniExpressExome-8v1_A_exm-rs1488902-131_B_F_1990479680fwd/BC/Ttagggtttgattttgtagagctttgtaaagaagtttagatttaataattt05/31/1306/18/15142Genomicunknown
ss783810027ILLUMINA|HumanOmniExpressExome-8v1_A_rs1488902-131_B_F_1894815583fwd/BC/Ttagggtttgattttgtagagctttgtaaagaagtttagatttaataattt05/31/1306/18/15142Genomicunknown
ss825406190ILLUMINA|HumanCNV370v1_C_rs1488902-123_B_F_IFB1135139172:0fwd/BC/Ttagggtttgattttgtagagctttgtaaagaagtttagatttaataattt06/24/1311/21/14144Genomicunknown
ss832099211ILLUMINA|HumanOmniExpress-12v1_H_rs1488902-131_B_F_1857602739fwd/BC/Ttagggtttgattttgtagagctttgtaaagaagtttagatttaataattt09/17/1306/18/15144Genomicunknown
ss832788317ILLUMINA|Human660W-Quad_v1_C_rs1488902-131_B_F_1857602739fwd/BC/Ttagggtttgattttgtagagctttgtaaagaagtttagatttaataattt09/18/1307/02/15142Genomicunknown
ss833379147ILLUMINA|Human660W-Quad_v1_H_rs1488902-131_B_F_1857602739fwd/BC/Ttagggtttgattttgtagagctttgtaaagaagtttagatttaataattt09/18/1307/02/15142Genomicunknown
ss833890413ILLUMINA|HumanOmni2.5-8v1_A_rs1488902-131_B_F_1865554369fwd/BC/Ttagggtttgattttgtagagctttgtaaagaagtttagatttaataattt09/18/1307/29/15142Genomicunknown
ss988796421EVA-GONL|EVA-GONL_rs1488902fwd/BC/Ttagggtttgattttgtagagctttgtaaagaagtttagatttaataattt04/23/1404/25/14142Genomicunknown
ss1077921178JMKIDD_LAB|HGDP_WGS_chr11_89345025fwd/BC/Ttagggtttgattttgtagagctttgtaaagaagtttagatttaataattt07/10/1407/12/14142Genomicunknown
ss13423393101000GENOMES|PHASE3_V1_55189723fwd/C/Ttagggtttgattttgtagagctttgtaaagaagtttagatttaataattt08/16/1408/16/14142Genomicunknown
ss1397612510HAMMER_LAB|HAMMER_LAB_rs1488902fwd/BC/Ttagggtttgattttgtagagctttgtaaagaagtttagatttaataattt09/30/1409/30/14146Genomicunknown
ss1426709177DDI|DDI_rs1488902fwd/BC/Ttagggtttgattttgtagagctttgtaaagaagtttagatttaataattt11/04/1411/04/14144Genomicunknown
ss1575854999EVA_GENOME_DK|EVA_GENOME_DK_snv_rs1488902fwd/BC/Ttagggtttgattttgtagagctttgtaaagaagtttagatttaataattt02/19/1502/19/15144Genomicunknown
ss1598459589EVA_DECODE|EVA_DECODE_11_88984673_669386_rs1488902fwd/BC/Ttagggtttgattttgtagagctttgtaaagaagtttagatttaataattt03/02/1503/04/15144Genomicunknown
ss1627134862EVA_UK10K_ALSPAC|EVA_UK10K_ALSPAC_11_89345025_30471962fwd/C/Ttagggtttgattttgtagagctttgtaaagaagtttagatttaataattt03/04/1503/04/15144Genomicunknown
ss1670128895EVA_UK10K_TWINSUK|EVA_UK10K_TWINSUK_11_89345025_30471962fwd/C/Ttagggtttgattttgtagagctttgtaaagaagtttagatttaataattt03/04/1503/04/15144Genomicunknown
ss1713272767EVA_SVP|EVA_SVP_967134fwd/BC/Ttagggtttgattttgtagagctttgtaaagaagtttagatttaataattt03/12/1503/12/15144Genomicunknown
ss1752037757ILLUMINA|OmniExpressExome-8v1-1_B_exm-rs1488902-131_B_F_1990479680fwd/BC/Ttagggtttgattttgtagagctttgtaaagaagtttagatttaataattt05/27/1506/09/15146Genomicunknown
ss1752037758ILLUMINA|OmniExpressExome-8v1-1_B_rs1488902-131_B_F_1894815583fwd/BC/Ttagggtttgattttgtagagctttgtaaagaagtttagatttaataattt05/27/1506/09/15146Genomicunknown
ss1806926456HAMMER_LAB|Hsieh_5946506fwd/BC/Ttagggtttgattttgtagagctttgtaaagaagtttagatttaataattt07/15/1507/16/15146Genomicunknown
ss1917864830ILLUMINA|HumanExome-12v1-1_B_exm-rs1488902-131_B_F_1990479680fwd/BC/Ttagggtttgattttgtagagctttgtaaagaagtttagatttaataattt10/16/1510/16/15147Genomicunknown
ss1932155810WEILL_CORNELL_DGM|SNV:chr11:89345025fwd/BC/Ttagggtttgattttgtagagctttgtaaagaagtttagatttaataattt10/16/1510/17/15147Genomicunknown
ss1946318774ILLUMINA|HumanCoreExome-12v1-0_C_exm-rs1488902-131_B_F_1990479680fwd/BC/Ttagggtttgattttgtagagctttgtaaagaagtttagatttaataattt10/29/1510/29/15147Genomicunknown
ss1946318775ILLUMINA|HumanCoreExome-12v1-0_C_rs1488902-131_B_F_1894815583fwd/BC/Ttagggtttgattttgtagagctttgtaaagaagtttagatttaataattt10/29/1510/29/15147Genomicunknown
ss1959373892ILLUMINA|exm-rs1488902-131_B_F_1990479680fwd/BC/Ttagggtttgattttgtagagctttgtaaagaagtttagatttaataattt11/13/1511/13/15147Genomicunknown
ss1959373893ILLUMINA|rs1488902-131_B_F_1894815583fwd/BC/Ttagggtttgattttgtagagctttgtaaagaagtttagatttaataattt11/13/1511/13/15147Genomicunknown
ss1967417239GENOMED|rs1488902fwd/BC/Ttagggtttgattttgtagagctttgtaaagaagtttagatttaataattt02/16/1602/16/16147Genomicunknown
ss2026820342JJLAB|SNP7322897fwd/BC/Ttagggtttgattttgtagagctttgtaaagaagtttagatttaataattt08/29/1608/30/16149Genomicunknown
ss2155132284USC_VALOUEV|NC_000011.9:g.89345025T>Cfwd/C/Ttagggtttgattttgtagagctttgtaaagaagtttagatttaataattt11/17/1611/17/16150Genomicunknown
ss2347985376TOPMED|11_89345025_T/Cfwd/C/Ttagggtttgattttgtagagctttgtaaagaagtttagatttaataattt11/19/1611/19/16150Genomicunknown
ss2627882429SYSTEMSBIOZJU|SYSTEMSBIOZJU_SNV4647062fwd/C/Ttagggtttgattttgtagagctttgtaaagaagtttagatttaataattt01/06/1701/06/17151Genomicunknown
ss2632864677ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_SoL-rs1488902-131_B_F_2131fwd/C/Ttagggtttgattttgtagagctttgtaaagaagtttagatttaataattt02/02/1702/02/17151Genomicunknown
ss2632864678ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_rs1488902-131_B_F_18948155fwd/C/Ttagggtttgattttgtagagctttgtaaagaagtttagatttaataattt02/02/1702/02/17151Genomicunknown
ss2632864679ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_seq-rs1488902-131_B_F_2130fwd/C/Ttagggtttgattttgtagagctttgtaaagaagtttagatttaataattt02/02/1702/02/17151Genomicunknown
ss2699431433GRF|rs1488902fwd/C/Ttagggtttgattttgtagagctttgtaaagaagtttagatttaataattt02/13/1702/13/17151Genomicunknown
ss2710742210ILLUMINA|Consortium-OncoArray_15047405_A_rs1488902-131_B_F_1894815583fwd/C/Ttagggtttgattttgtagagctttgtaaagaagtttagatttaataattt03/22/1703/22/17151Genomicunknown
ss2902685324GNOMAD|rs1488902fwd/C/Ttagggtttgattttgtagagctttgtaaagaagtttagatttaataattt05/22/1705/22/17151Genomicunknown
ss2984952750AFFY|Axiom_PsorMich_Affx-6290769fwd/C/Ttagggtttgattttgtagagctttgtaaagaagtttagatttaataattt05/24/1705/24/17151Genomicunknown
ss3008524404SWEGEN|NC_000011.9:g.89345025T>Cfwd/C/Ttagggtttgattttgtagagctttgtaaagaagtttagatttaataattt05/30/1705/30/17151Genomicunknown
ss3021362496ILLUMINA|MEGA_Consortium_v2_15070954_A2_exm-rs1488902-131_B_F_1990479680fwd/C/Ttagggtttgattttgtagagctttgtaaagaagtttagatttaataattt06/28/1706/28/17151Genomicunknown
ss3021362497ILLUMINA|MEGA_Consortium_v2_15070954_A2_rs1488902-138_B_F_2264356169fwd/C/Ttagggtttgattttgtagagctttgtaaagaagtttagatttaataattt06/28/1706/28/17151Genomicunknown
ss3027207510BIOINF_KMB_FNS_UNIBA|11.89611857T>Cfwd/C/Ttagggtttgattttgtagagctttgtaaagaagtttagatttaataattt07/05/1707/05/17151Genomicunknown
ss3152324391TOPMED|TOPMed_freeze_5?chr11:89,611,857fwd/C/Ttagggtttgattttgtagagctttgtaaagaagtttagatttaataattt09/30/1709/30/17151Genomicunknown
ss3349718636CSHL|rs1488902fwd/C/Ttagggtttgattttgtagagctttgtaaagaagtttagatttaataattt10/02/1710/02/17151Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs1488902|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='C/T'|mol=Genomic|build=151
 GAACTATGCA GATCAACAGA TTTTTTTTTT CAAACAGCCC AAAGCTGCTT CTGATCAAAA
 ATTCAGTGAA ACTTGTTCAG GAAACCCTGG AGATTAGAAA GGAAGGCAGA GTAAGATCAG
 TTCTGTGTGC ATTTTCCCAG AGGCAACCCC ATCTGGCTAA AGCACCTGGG TCTCAGTCCC
 CAGAAACTGC CAGGTGGCCT GCCAATGTAG AGAAGAGAGT CCTTGGGAAG TTCCACCTGT
 GCCTTTTTCT TCTATGGGAG TCATTCTATG GGTTCAAGCT TCTTTTCTGA GGACAATACT
 GCATCCTGCC TCCATTGCTT CTTGTCCCCC TTTGTCATGA CGGAGTATGC CTCTGACTTT
 GATATTAGGA TTGGATCCTT CCCTGAATCT CCCTCAAATA GCACTTACTT CTCCAATTTA
 AAATCTAAAA CTTGCCCTAT GCATACCTTC CCTCCCTCAT TACAATACTA GTTCATAGGG
 TTTGATTTTG TAGAGCTTTG
 Y
 TAAAGAAGTT TAGATTTAAT AATTTTAAAT GAGTCATTGA TTATTTTGTT CTGATAAGTC
 AATATTTTAA GATGATGTTC TTGTTCATGG ATTCAATGAG CATAAAATTT GTGGCTGGAA
 TTGATTGGGA GCAGATAGAA GGACTCAGAG TTGTACTAGC CAATAATCCA GCCATGGTGT
 GATGGGATAT TCACACGGCT CCCCCTGCCT ATGTCCTTTT TTGGAATGAG AAAAGAAAAA
 GTTGTATCAG TGGTTTACAA TATTTATGGT AGCTATCGGC AATGCACATT GAATGAGCAA
 ACTGCTAGAT GCTATTCTTC ACTCAATGTG CTCGCTTAAG CAAATAATAA GAAAAATATA
 TTTGAAAAGG GAAGACAAAG TTTGATCATA AATATATTCT TTCTGAACTT CTGCTTTCTG
 GTCATGTAAT TCACTTTGGG GATTACAAAG GAAAAGTGAA AGTAGAGTCA AATTATTAAG
 TAATGCGTTA TTAAGGAAGT

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_033240.2 ABBA01011518
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) . See additional population frequency from 1000Genome [here] back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceC
C/C
C/T
N
T
T/T
HWPC
N
T
ss119929404YRI 2IG 1.00000000 0.50000000 0.50000000
ss132039654ENSEMBL_Venter 2IG 1.00000000 1.00000000
ENSEMBL_celera 2IG 1.00000000 1.00000000
ss1342339310EAS 1008AF 0.46129999 0.53869998
EUR 1006AF 0.34790000 0.65209997
AFR 1322AF 0.53929996 0.46070001
AMR 694AF 0.32279998 0.67720002
SAS 978AF 0.28120002 0.71880001
ss170556294YRISub-Saharan African 2IG 1.00000000 1.00000000
ss175225343PGP 2IG 1.00000000 0.50000000 0.50000000
ss203013864BANTU 2IG 1.00000000 0.50000000 0.50000000
ss225375566pilot_1_YRI_low_coverage_panel 118AF 0.51694918 0.48305085
ss2314407AfAmAfrican American 12IG 0.166666670.50000000 0.33333334 0.41666666 0.58333331
CaucasianEuropean 18IG 0.222222220.66666669 0.11111111 0.55555558 0.44444445
AsianAsian 8IG 0.250000000.50000000 0.25000000 0.50000000 0.50000000
CEPHEuropean 10IG 0.80000001 0.20000000 0.40000001 0.60000002
PDpanelGlobal 48IG 0.125000000.37500000 0.500000000.583882000.31250000 0.68750000
HapMap-CEUEuropean 226IG 0.141592920.54867256 0.309734520.200325000.41592920 0.58407080
HapMap-HCBAsian 86IG 0.209302320.51162791 0.279069781.000000000.46511629 0.53488374
HapMap-JPTAsian 170IG 0.341176480.40000001 0.258823540.099721000.54117650 0.45882353
HapMap-YRISub-Saharan African 224IG 0.196428570.55357140 0.250000000.250592000.47321430 0.52678573
CHMJAsian 74IG0.50000000 0.013513510.48648649 0.500000000.013513510.48648649
HAPMAP-ASW 98IG 0.244897960.55102038 0.204081640.479500000.52040815 0.47959185
HAPMAP-CHBAsian 82IG 0.146341460.51219511 0.341463420.751830000.40243903 0.59756100
HAPMAP-CHD 170IG 0.235294120.50588238 0.258823541.000000000.48823529 0.51176471
HAPMAP-GIH 176IG 0.068181820.56818181 0.363636370.025056000.35227272 0.64772725
HAPMAP-LWK 180IG 0.188888890.47777778 0.333333341.000000000.42777777 0.57222223
HAPMAP-MEX 100IG 0.080000000.46000001 0.460000010.654721000.31000000 0.69000000
HAPMAP-MKK 286IG 0.195804190.43356642 0.370629370.250592000.41258740 0.58741260
HAPMAP-TSI 176IG 0.147727270.43181819 0.420454530.583882000.36363637 0.63636363
ENSEMBL_Watson 2IG 1.00000000 1.00000000
ss23390878AFD_EUR_PANELEuropean 46IG 0.086956520.60869563 0.304347810.200325000.39130434 0.60869563
AFD_AFR_PANELAfrican American 46IG 0.304347810.43478259 0.260869560.583882000.52173913 0.47826087
AFD_CHN_PANELAsian 46IG 0.217391300.52173913 0.260869561.000000000.47826087 0.52173913
ss235655477pilot_1_CEU_low_coverage_panel 120AF 0.37500000 0.62500000
ss242266883pilot_1_CHB+JPT_low_coverage_panel 120AF 0.44999999 0.55000001
ss66112459HapMap-CEUEuropean 118IG 0.101694910.59322035 0.305084740.099721000.39830509 0.60169494
HapMap-HCBAsian 90IG 0.200000000.48888889 0.311111121.000000000.44444445 0.55555558
HapMap-JPTAsian 90IG 0.222222220.44444445 0.333333340.527089000.44444445 0.55555558
HapMap-YRISub-Saharan African 120IG 0.200000000.50000000 0.300000011.000000000.44999999 0.55000001
ss69324032HapMap-CEUEuropean 120IG 0.100000000.60000002 0.300000010.099721000.40000001 0.60000002
HapMap-HCBAsian 90IG 0.200000000.48888889 0.311111121.000000000.44444445 0.55555558
HapMap-JPTAsian 90IG 0.266666680.40000001 0.333333340.200325000.46666667 0.53333336
HapMap-YRISub-Saharan African 120IG 0.216666670.48333332 0.300000011.000000000.45833334 0.54166669
ss76094332ICMHP 8IG 0.250000000.50000000 0.25000000 0.50000000 0.50000000
ss97405393J. Craig Venter 2IG 1.00000000 1.00000000

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
Additional Freq. Data
0.482+/-0.0940000ALFRED: The Allele Frequency Database

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqbySubmitterwith2hitwithHapMapFreqWith1000GenomeData
Validated by: PERLEGEN
DoubleHit found by:  BCM_SSAHASNP
UNKNOWNUNKNOWNUNKNOWN

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