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Reference SNP (refSNP) Cluster Report: rs12680546                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:120/151
Map to Genome Build:108/Weight 1
Validation Status:byClusterbyFreqwithHapMapFreqWith1000GenomeData
Citation:PubMedLitVarNEW
Association:NHGRI GWAS PheGenI
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:A/G (FWD)
Allele Origin:
Ancestral Allele:A
Variation Viewer:link to VariationViewer
Clinical Significance:NA
MAF/MinorAlleleCount:G=0.1424/713 (1000 Genomes)
G=0.2031/25501 (TOPMED)
HGVS Names
  • CM000670.2:g.135859496A>G
  • NC_000008.10:g.136871739A>G
Links , Linkout
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss280030264 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs12680546 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss20350019CSHL-HAPMAP|CSHL-HuFF-200402.chr8.NT_028251.11_1396809byFreqfwd/TA/Gtgttgcactgctgactgatacacatagtgcagcacagctggccctccatacaggtgggtt02/21/0410/26/06120Genomicunknown
ss44881722ABI|hCV11457350fwd/TA/Gtgttgcactgctgactgatacacatagtgcagcacagctggccctccatacaggtgggtt07/19/0507/19/05126Genomicunknown
ss66798437ILLUMINA|HumanHap300v1.1_rs12680546fwd/BA/Gtgttgcactgctgactgatacacatagtgcagcacagctggccctccatacaggtgggtt11/09/0611/09/06127Genomicunknown
ss67032728ILLUMINA|HumanHap550v1.1_rs12680546fwd/TA/Gtgttgcactgctgactgatacacatagtgcagcacagctggccctccatacaggtgggtt11/14/0611/14/06127Genomicunknown
ss67355970ILLUMINA|HumanHap650Yv1.0_rs12680546fwd/TA/Gtgttgcactgctgactgatacacatagtgcagcacagctggccctccatacaggtgggtt11/14/0611/14/06127Genomicunknown
ss70414804ILLUMINA|HumanHap300v2.0_rs12680546fwd/TA/Gtgttgcactgctgactgatacacatagtgcagcacagctggccctccatacaggtgggtt04/18/0711/18/07127Genomicunknown
ss70581427ILLUMINA|HumanHap550v3.0__rs12680546rev/BC/Taacccacctgtatggagggccagctgtgctgcactatgtgtatcagtcagcagtgcaaca04/20/0703/30/08130Genomicunknown
ss71123685ILLUMINA|HumanHap650Yv3.0_rs12680546fwd/TA/Gtgttgcactgctgactgatacacatagtgcagcacagctggccctccatacaggtgggtt04/23/0704/23/07127Genomicunknown
ss75820936ILLUMINA|ILMN_Human_1M_rs12680546fwd/TA/Gtgttgcactgctgactgatacacatagtgcagcacagctggccctccatacaggtgggtt08/28/0708/29/07129Genomicunknown
ss84135942HGSV|Cor18517_SNV_20070510.chr8_136940921fwd/TA/Gtgttgcactgctgactgatacacatagtgcagcacagctggccctccatacaggtgggtt12/06/0712/06/07130Genomicunknown
ss85262137KRIBB_YJKIM|KHS943911fwd/TA/Gtgttgcactgctgactgatacacatagtgcagcacagctggccctccatacaggtgggtt12/04/0712/08/07130Genomicunknown
ss93977107BCMHGSC_JDW|JWB-2532207fwd/TA/Gtgttgcactgctgactgatacacatagtgcagcacagctggccctccatacaggtgggtt02/26/0803/05/08129Genomicunknown
ss104580611BGI|BGI_rs12680546fwd/TA/Gtgttgcactgctgactgatacacatagtgcagcacagctggccctccatacaggtgggtt06/08/0806/18/09131Genomicunknown
ss121594640ILLUMINA|HumanCNV370v1_C_rs12680546fwd/TA/Gtgttgcactgctgactgatacacatagtgcagcacagctggccctccatacaggtgggtt04/14/0904/14/09131Genomicunknown
ss143822750ENSEMBL|ENSSNP7227049fwd/TA/Gtgttgcactgctgactgatacacatagtgcagcacagctggccctccatacaggtgggtt06/05/0906/06/09131Genomicunknown
ss153267493ILLUMINA|Human610_Quadv1_B_rs12680546-128_B_R_1501644623rev/BC/Taacccacctgtatggagggccagctgtgctgcactatgtgtatcagtcagcagtgcaaca06/18/0906/19/09131Genomicunknown
ss159231143ILLUMINA|Human660W-Quad_v1_A_rs12680546-128_B_R_1501644623rev/BC/Taacccacctgtatggagggccagctgtgctgcactatgtgtatcagtcagcagtgcaaca07/06/0907/06/09131Genomicunknown
ss160294019ILLUMINA|HumanOmni1-Quad_v1-0_B_rs12680546-128_B_R_1501644623rev/BC/Taacccacctgtatggagggccagctgtgctgcactatgtgtatcagtcagcagtgcaaca08/04/0910/02/09131Genomicunknown
ss161615339ENSEMBL|ENSSNP2757144byFreqfwd/TA/Gtgttgcactgctgactgatacacatagtgcagcacagctggccctccatacaggtgggtt09/24/0903/07/10131Genomicunknown
ss162848923COMPLETE_GENOMICS|NA07022_36_chr8_136940921fwd/TA/Gtgttgcactgctgactgatacacatagtgcagcacagctggccctccatacaggtgggtt09/28/0909/29/09132Genomicunknown
ss170205874ILLUMINA|HumanCNV370-Quadv3_C_rs12680546-128_B_R_1501644623rev/BC/Taacccacctgtatggagggccagctgtgctgcactatgtgtatcagtcagcagtgcaaca10/01/0910/03/09132Genomicunknown
ss172220486ILLUMINA|Human1M-Duov3_B_rs12680546-128_B_R_1501644623rev/BC/Taacccacctgtatggagggccagctgtgctgcactatgtgtatcagtcagcagtgcaaca10/01/0910/02/09132Genomicunknown
ss206459293BCM-HGSC-SUB|BCM_CMT_1011-1721403fwd/TA/Gtgttgcactgctgactgatacacatagtgcagcacagctggccctccatacaggtgggtt03/15/1003/17/10132Genomicunknown
ss2240173561000GENOMES|pilot_1_YRI_5827039_chr8_136940921fwd/A/Gtgttgcactgctgactgatacacatagtgcagcacagctggccctccatacaggtgggtt04/22/1004/22/10132Genomicunknown
ss2346549521000GENOMES|pilot_1_CEU_4259581_chr8_136940921fwd/A/Gtgttgcactgctgactgatacacatagtgcagcacagctggccctccatacaggtgggtt05/01/1005/01/10132Genomicunknown
ss2414623721000GENOMES|pilot_1_CHB+JPT_3347449_chr8_136940921fwd/A/Gtgttgcactgctgactgatacacatagtgcagcacagctggccctccatacaggtgggtt05/01/1005/01/10132Genomicunknown
ss254697328BL|SNP145587_8_136940921fwd/TA/Gtgttgcactgctgactgatacacatagtgcagcacagctggccctccatacaggtgggtt08/19/1008/19/10134Genomicunknown
ss280030264GMI|GMI_AK_SNP_4350535fwd/A/Gtgttgcactgctgactgatacacatagtgcagcacagctggccctccatacaggtgggtt12/16/1012/16/10137Genomicunknown
ss285936640GMI|GMI_NA10851_SNP_1949413fwd/A/Gtgttgcactgctgactgatacacatagtgcagcacagctggccctccatacaggtgggtt12/17/1012/17/10138Genomicunknown
ss294196266PJP|SNP_3702624_chr8_136940921fwd/A/Gtgttgcactgctgactgatacacatagtgcagcacagctggccctccatacaggtgggtt01/21/1101/21/11134Genomicunknown
ss479803949ILLUMINA|HumanOmni2.5-4v1_B_rs12680546-128_B_R_1777104289fwd/TA/Gcactgctgactgatacacatagtgcagcacagctggccctccatacaggt01/30/1210/29/16137Genomicunknown
ss479810955ILLUMINA|HumanOmniExpress-12v1_C_rs12680546-131_B_R_1857468748fwd/TA/Gcactgctgactgatacacatagtgcagcacagctggccctccatacaggt01/30/1210/27/16137Genomicunknown
ss480392883ILLUMINA|HumanOmni1-Quad_v1-0_C_rs12680546-131_B_R_1865466649fwd/TA/Gcactgctgactgatacacatagtgcagcacagctggccctccatacaggt01/30/1208/28/15146Genomicunknown
ss484700456ILLUMINA|HumanOmni2.5-4v1_D_rs12680546-131_B_R_1857468748fwd/TA/Gcactgctgactgatacacatagtgcagcacagctggccctccatacaggt01/30/1210/28/16137Genomicunknown
ss491417577EXOME_CHIP|.GWAS._133803_chr_8_136871739fwd/TA/Gtgttgcactgctgactgatacacatagtgcagcacagctggccctccatacaggtgggtt03/05/1203/05/12137Genomicunknown
ss536807686ILLUMINA|HumanOmni5-4v1_B_rs12680546-131_B_R_1885470851fwd/TA/Gcactgctgactgatacacatagtgcagcacagctggccctccatacaggt06/22/1208/29/15146Genomicunknown
ss561113236TISHKOFF|snp_chr8_136871739fwd/TA/Gcactgctgactgatacacatagtgcagcacagctggccctccatacaggt11/22/1211/23/12138Genomicunknown
ss655546719SSMP|8_136871739fwd/TA/Gcactgctgactgatacacatagtgcagcacagctggccctccatacaggt12/14/1202/12/15138Genomicunknown
ss778788546ILLUMINA|HumanOmni25Exome-8v1_A_rs12680546-131_B_R_1865466649fwd/TA/Gcactgctgactgatacacatagtgcagcacagctggccctccatacaggt05/30/1307/10/15146Genomicunknown
ss780681584ILLUMINA|HumanOmni25Exome-8v1_A_exm-rs12680546-131_B_R_1990479203fwd/TA/Gcactgctgactgatacacatagtgcagcacagctggccctccatacaggt05/30/1307/10/15146Genomicunknown
ss782797002ILLUMINA|HumanOmni2.5-4v1_H_rs12680546-131_B_R_1857468748fwd/TA/Gcactgctgactgatacacatagtgcagcacagctggccctccatacaggt05/30/1307/29/15146Genomicunknown
ss783354911ILLUMINA|HumanOmniExpressExome-8v1_A_exm-rs12680546-131_B_R_1990479203fwd/TA/Gcactgctgactgatacacatagtgcagcacagctggccctccatacaggt05/31/1306/19/15146Genomicunknown
ss783762600ILLUMINA|HumanOmniExpressExome-8v1_A_rs12680546-131_B_R_1885470851fwd/TA/Gcactgctgactgatacacatagtgcagcacagctggccctccatacaggt05/31/1306/19/15146Genomicunknown
ss825384078ILLUMINA|HumanCNV370v1_C_rs12680546-126_B_R_IFB1137384251:0fwd/TA/Gcactgctgactgatacacatagtgcagcacagctggccctccatacaggt06/24/1311/21/14144Genomicunknown
ss832049916ILLUMINA|HumanOmniExpress-12v1_H_rs12680546-131_B_R_1857468748fwd/TA/Gcactgctgactgatacacatagtgcagcacagctggccctccatacaggt09/17/1306/19/15146Genomicunknown
ss834248564ILLUMINA|HumanOmni2.5-8v1_A_rs12680546-131_B_R_1865466649fwd/TA/Gcactgctgactgatacacatagtgcagcacagctggccctccatacaggt09/18/1307/29/15146Genomicunknown
ss986125557EVA-GONL|EVA-GONL_rs12680546fwd/TA/Gcactgctgactgatacacatagtgcagcacagctggccctccatacaggt04/23/1404/25/14142Genomicunknown
ss1075968972JMKIDD_LAB|HGDP_WGS_chr8_136871739fwd/TA/Gcactgctgactgatacacatagtgcagcacagctggccctccatacaggt07/10/1407/11/14142Genomicunknown
ss13321700121000GENOMES|PHASE3_V1_44612521fwd/A/Gcactgctgactgatacacatagtgcagcacagctggccctccatacaggt08/16/1408/16/14142Genomicunknown
ss1397541939HAMMER_LAB|HAMMER_LAB_rs12680546fwd/TA/Gcactgctgactgatacacatagtgcagcacagctggccctccatacaggt09/30/1409/30/14146Genomicunknown
ss1431691580DDI|DDI_rs12680546fwd/TA/Gcactgctgactgatacacatagtgcagcacagctggccctccatacaggt11/04/1411/05/14144Genomicunknown
ss1582913361EVA_GENOME_DK|EVA_GENOME_DK_snv_rs12680546fwd/TA/Gcactgctgactgatacacatagtgcagcacagctggccctccatacaggt02/19/1502/20/15144Genomicunknown
ss1595744843EVA_DECODE|EVA_DECODE_8_136940921_1123570_rs12680546fwd/TA/Gcactgctgactgatacacatagtgcagcacagctggccctccatacaggt03/02/1503/03/15144Genomicunknown
ss1621874510EVA_UK10K_ALSPAC|EVA_UK10K_ALSPAC_8_136871739_24701450fwd/A/Gcactgctgactgatacacatagtgcagcacagctggccctccatacaggt03/04/1503/04/15144Genomicunknown
ss1664868543EVA_UK10K_TWINSUK|EVA_UK10K_TWINSUK_8_136871739_24701450fwd/A/Gcactgctgactgatacacatagtgcagcacagctggccctccatacaggt03/04/1503/04/15144Genomicunknown
ss1713076428EVA_SVP|EVA_SVP_770795fwd/TA/Gcactgctgactgatacacatagtgcagcacagctggccctccatacaggt03/12/1503/12/15144Genomicunknown
ss1752715606ILLUMINA|OmniExpressExome-8v1-1_B_exm-rs12680546-131_B_R_1990479203fwd/TA/Gcactgctgactgatacacatagtgcagcacagctggccctccatacaggt05/27/1506/09/15146Genomicunknown
ss1752715607ILLUMINA|OmniExpressExome-8v1-1_B_rs12680546-131_B_R_2087475077fwd/TA/Gcactgctgactgatacacatagtgcagcacagctggccctccatacaggt05/27/1506/09/15146Genomicunknown
ss1917832292ILLUMINA|HumanExome-12v1-1_B_exm-rs12680546-131_B_R_1990479203fwd/TA/Gcactgctgactgatacacatagtgcagcacagctggccctccatacaggt10/16/1510/16/15147Genomicunknown
ss1929399577WEILL_CORNELL_DGM|SNV:chr8:136871739fwd/TA/Gcactgctgactgatacacatagtgcagcacagctggccctccatacaggt10/16/1510/17/15147Genomicunknown
ss1946248254ILLUMINA|HumanCoreExome-12v1-0_C_exm-rs12680546-131_B_R_1990479203fwd/TA/Gcactgctgactgatacacatagtgcagcacagctggccctccatacaggt10/29/1510/29/15147Genomicunknown
ss1946248255ILLUMINA|HumanCoreExome-12v1-0_C_rs12680546-131_B_R_2087475077fwd/TA/Gcactgctgactgatacacatagtgcagcacagctggccctccatacaggt10/29/1510/29/15147Genomicunknown
ss1959148119ILLUMINA|exm-rs12680546-131_B_R_1990479203fwd/TA/Gcactgctgactgatacacatagtgcagcacagctggccctccatacaggt11/13/1511/13/15147Genomicunknown
ss1959148120ILLUMINA|rs12680546-131_B_R_1885470851fwd/TA/Gcactgctgactgatacacatagtgcagcacagctggccctccatacaggt11/13/1511/13/15147Genomicunknown
ss1971109434GENOMED|rs12680546fwd/TA/Gcactgctgactgatacacatagtgcagcacagctggccctccatacaggt02/16/1602/16/16147Genomicunknown
ss2025404307JJLAB|SNP5906862fwd/TA/Gcactgctgactgatacacatagtgcagcacagctggccctccatacaggt08/29/1608/30/16149Genomicunknown
ss2153633122USC_VALOUEV|NC_000008.10:g.136871739A>Gfwd/A/Gcactgctgactgatacacatagtgcagcacagctggccctccatacaggt11/17/1611/17/16150Genomicunknown
ss2307909125HUMAN_LONGEVITY|HLI-8-135859496-A-Gfwd/A/Gcactgctgactgatacacatagtgcagcacagctggccctccatacaggt11/18/1611/18/16150Genomicunknown
ss2477892585TOPMED|8_136871739_A/Gfwd/A/Gcactgctgactgatacacatagtgcagcacagctggccctccatacaggt11/20/1611/20/16150Genomicunknown
ss2627176573SYSTEMSBIOZJU|SYSTEMSBIOZJU_SNV3758969fwd/A/Gcactgctgactgatacacatagtgcagcacagctggccctccatacaggt01/06/1701/06/17151Genomicunknown
ss2634812615ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_SoL-rs12680546-131_B_R_213fwd/A/Gcactgctgactgatacacatagtgcagcacagctggccctccatacaggt02/02/1702/02/17151Genomicunknown
ss2634812616ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_rs12680546-131_B_R_2087475fwd/A/Gcactgctgactgatacacatagtgcagcacagctggccctccatacaggt02/02/1702/02/17151Genomicunknown
ss2634812617ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_seq-rs12680546-131_B_R_213fwd/A/Gcactgctgactgatacacatagtgcagcacagctggccctccatacaggt02/02/1702/02/17151Genomicunknown
ss2709421562GRF|rs12680546fwd/A/Gcactgctgactgatacacatagtgcagcacagctggccctccatacaggt02/13/1702/13/17151Genomicunknown
ss2711152345ILLUMINA|Consortium-OncoArray_15047405_A_rs12680546-131_B_R_2087475077fwd/A/Gcactgctgactgatacacatagtgcagcacagctggccctccatacaggt03/22/1703/22/17151Genomicunknown
ss2873406388GNOMAD|rs12680546fwd/A/Gcactgctgactgatacacatagtgcagcacagctggccctccatacaggt05/19/1705/19/17151Genomicunknown
ss2985450242AFFY|Axiom_PsorMich_Affx-31664700fwd/A/Gcactgctgactgatacacatagtgcagcacagctggccctccatacaggt05/24/1705/24/17151Genomicunknown
ss3004099354SWEGEN|NC_000008.10:g.136871739A>Gfwd/A/Gcactgctgactgatacacatagtgcagcacagctggccctccatacaggt05/30/1705/30/17151Genomicunknown
ss3022889179ILLUMINA|MEGA_Consortium_v2_15070954_A2_exm-rs12680546-131_B_R_1990479203fwd/A/Gcactgctgactgatacacatagtgcagcacagctggccctccatacaggt06/28/1706/28/17151Genomicunknown
ss3022889180ILLUMINA|MEGA_Consortium_v2_15070954_A2_rs12680546-138_B_R_2268388311fwd/A/Gcactgctgactgatacacatagtgcagcacagctggccctccatacaggt06/28/1706/28/17151Genomicunknown
ss3026489102BIOINF_KMB_FNS_UNIBA|8.135859496A>Gfwd/A/Gcactgctgactgatacacatagtgcagcacagctggccctccatacaggt07/05/1707/05/17151Genomicunknown
ss3348436656CSHL|rs12680546fwd/A/Gcactgctgactgatacacatagtgcagcacagctggccctccatacaggt10/02/1710/02/17151Genomicunknown
ss3577388575TOPMED|TOPMed_freeze_5?chr8:135,859,496fwd/A/Gcactgctgactgatacacatagtgcagcacagctggccctccatacaggt10/06/1710/06/17151Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs12680546|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='A/G'|mol=Genomic|build=151
 AATCTGGGAG GCGGAGCTTG CAGTGAGCCA AGACCGCGCC ACTGCACTCC AGCCTGGGCG
 ACAGAGCGAG ACTCCGTCTC AAAAAAAAGA ATTAGGGGGT GAGATAGATG ACAGATGTGG
 TTAATTGCAT TATTCTTCCT GATTTTTCAC GCCTTCCTGT ATGCTTGTCT TAAGATCTAG
 CACTTCTGTT CTCTGGGGTT GGAGGATATT GTCTTACTGT GTCTCTGTTG GACATGGCCT
 TGTGATTTGC CTCAGCCTTT GACCTTTGAG ATGTAGGTGG AAGCAACAAA GTGACAGTTC
 CAAGTCCCGA CCATAAGAAG CATTGTGTAT TTCCATTTGT GCTTCCAACC GTTCCCATGA
 CAAGAGCATA CCCTTGGATA TAGCTGCTAC TCTTTCGTCT TGGACCCCAG AATGAACGTG
 TGGATCTCCA GCCTCCCCAC TAACCTGTGG GCCTGAGAAC AAGAGCTCCC TGTTGCACTG
 CTGACTGATA CACATAGTGC
 R
 AGCACAGCTG GCCCTCCATA CAGGTGGGTT TCGAATACTG TATTTTCAAT CCAAGTTTGG
 TTGAAAAAAG TCTGTGCATA AATGGACCCT CGTGGTTCAA ACCCTTGTTG TTTAAGGGTC
 AACTGTATAT TATTTTGTCA GTAAAAGAAA CAATGACTAA ATATATCCTT GCCTTGAGTG
 TCCACTCTTA GTAAGATAAG GAAGATGAGA TAATTGTCAA AGAGTAGAGA CCTGTCACAG
 GTAATGCTAA ACATTGTTAT CTTTCTGTAT AAAACTCCTT GCTGAGCTGT TTACTTACAT
 TATTTCACTT ATTCTTTCTT TTCCTTTTTT TTTTTTTTTT TTTTTTTTTG ACAGAGTCTT
 GTTCTGTCGC CACACTGGAG TGCAGTAGCT CAATCTTGGC TCACCGCAAT CTCTACCTCC
 CGGGTTCAAG CAGTTCCCCT GCCTCTGACT CCCCAGTAGC TGGGACTACA GGCCCAGCTA
 ATTTTTTGTA ATTTAGTAGA

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_028251
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) . See additional population frequency from 1000Genome [here] back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceA/A
A/G
G/G
HWPA
G
ss1332170012EAS 1008AF 0.915699960.08430000
EUR 1006AF 0.718699990.28129998
AFR 1322AF 0.934899990.06510000
AMR 694AF 0.824200030.17580001
SAS 978AF 0.859900000.14010000
ss143822750ENSEMBL_Watson 2IG 1.00000000 0.500000000.50000000
ss161615339ENSEMBL_celera 4IG0.50000000 0.50000000 0.500000000.50000000
ss162848923CEUEuropean 2IG 1.00000000 1.00000000
ss20350019HapMap-CEUEuropean 226IG0.442477880.477876100.079646020.294266000.681415920.31858408
HapMap-HCBAsian 86IG0.790697690.186046510.023255810.583882000.883720930.11627907
HapMap-JPTAsian 172IG0.813953460.18604651 0.751830000.906976760.09302326
HapMap-YRISub-Saharan African 226IG0.911504450.08849557 1.000000000.955752190.04424779
HAPMAP-ASW 98IG0.775510190.22448979 0.751830000.887755100.11224490
HAPMAP-CHBAsian 82IG0.707317050.29268292 0.583882000.853658560.14634146
HAPMAP-CHD 170IG0.752941190.24705882 0.583882000.876470570.12352941
HAPMAP-GIH 176IG0.761363630.215909090.022727270.654721000.869318190.13068181
HAPMAP-LWK 180IG0.888888900.11111111 1.000000000.944444420.05555556
HAPMAP-MEX 100IG0.639999990.319999990.040000001.000000000.800000010.20000000
HAPMAP-MKK 286IG0.622377630.321678310.055944060.583882000.783216770.21678321
HAPMAP-TSI 176IG0.454545470.488636370.056818180.150222000.698863630.30113637
ENSEMBL_Venter 2IG1.00000000 1.00000000
ss224017356pilot_1_YRI_low_coverage_panel 118AF 0.957627120.04237288
ss234654952pilot_1_CEU_low_coverage_panel 120AF 0.658333360.34166667
ss241462372pilot_1_CHB+JPT_low_coverage_panel 120AF 0.899999980.10000000

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
Additional Freq. Data
0.244+/-0.2500000ALFRED: The Allele Frequency Database

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqwithHapMapFreqWith1000GenomeDataUNKNOWNUNKNOWNUNKNOWN

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