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Reference SNP (refSNP) Cluster Report: rs11099864                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:120/151
Map to Genome Build:108/Weight 1
Validation Status:byClusterbyFreqwith2hitwithHapMapFreqWith1000GenomeData
Association:NHGRI GWAS PheGenI
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:A/G (FWD)
Allele Origin:
Ancestral Allele:G
Variation Viewer:link to VariationViewer
Clinical Significance:NA
MAF/MinorAlleleCount:A=0.4808/2408 (1000 Genomes)
G=0.4315/54182 (TOPMED)
HGVS Names
  • CM000666.2:g.152972202G>A
  • NC_000004.11:g.153893354G>A
  • NC_000004.12:g.152972202G>A
  • NM_033393.2:c.1219-175G>A
Links , Linkout
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss277994258 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs11099864 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss17005244CSHL-HAPMAP|CSHL-HuAA-200402.chr4.NT_016606.16_15441410fwd/TA/Gcttcaccttgctttccccgaggtttgttctggttgaattattttccttttggctctgatt02/17/0403/04/04120Genomicunknown
ss19566666CSHL-HAPMAP|CSHL-HuDD-200402.chr4.NT_016606.16_15441410fwd/TA/Gcttcaccttgctttccccgaggtttgttctggttgaattattttccttttggctctgatt02/20/0403/04/04120Genomicunknown
ss22119165SSAHASNP|WGSA-200403-chr4.chr4.NT_016606.16_15441410fwd/TA/Gcttcaccttgctttccccgaggtttgttctggttgaattattttccttttggctctgatt03/20/0403/21/04121Genomicunknown
ss24152382PERLEGEN|afd3475892byFreqfwd/TA/Gcttcaccttgctttccccgaggtttgttctggttgaattattttccttttggctctgatt08/10/0409/13/04123Genomicunknown
ss42341575ABI|hCV31864039byFreqfwd/TA/Gcttcaccttgctttccccgaggtttgttctggttgaattattttccttttggctctgatt07/17/0511/03/06126Genomicunknown
ss66920480ILLUMINA|HumanHap550v1.1_rs11099864fwd/TA/Gcttcaccttgctttccccgaggtttgttctggttgaattattttccttttggctctgatt11/14/0611/14/06127Genomicunknown
ss67064978ILLUMINA|HumanHap650Yv1.0_rs11099864fwd/TA/Gcttcaccttgctttccccgaggtttgttctggttgaattattttccttttggctctgatt11/14/0611/14/06127Genomicunknown
ss68100313ILLUMINA|HumanHap250Sv1.0_rs11099864fwd/TA/Gcttcaccttgctttccccgaggtttgttctggttgaattattttccttttggctctgatt12/06/0612/07/06127Genomicunknown
ss68914886PERLEGEN|PGP03475892byFreqfwd/TA/Gcttcaccttgctttccccgaggtttgttctggttgaattattttccttttggctctgatt01/30/0703/31/08127Genomicunknown
ss70518292ILLUMINA|HumanHap550v3.0__rs11099864rev/BC/Taatcagagccaaaaggaaaataattcaaccagaacaaacctcggggaaagcaaggtgaag04/20/0703/30/08130Genomicunknown
ss71046874ILLUMINA|HumanHap650Yv3.0_rs11099864fwd/TA/Gcttcaccttgctttccccgaggtttgttctggttgaattattttccttttggctctgatt04/23/0704/23/07127Genomicunknown
ss75456270ILLUMINA|ILMN_Human_1M_rs11099864fwd/TA/Gcttcaccttgctttccccgaggtttgttctggttgaattattttccttttggctctgatt08/28/0708/29/07129Genomicunknown
ss85067281KRIBB_YJKIM|KHS889542fwd/TA/Gcttcaccttgctttccccgaggtttgttctggttgaattattttccttttggctctgatt12/04/0712/08/07130Genomicunknown
ss92832743BCMHGSC_JDW|JWB-1873841fwd/TA/Gcttcaccttgctttccccgaggtttgttctggttgaattattttccttttggctctgatt02/26/0803/03/08129Genomicunknown
ss99022355HUMANGENOME_JCVI|1103654587805fwd/TA/Gcttcaccttgctttccccgaggtttgttctggttgaattattttccttttggctctgatt04/02/0804/02/08130Genomicunknown
ss105875008BGI|BGI_rs11099864fwd/TA/Gcttcaccttgctttccccgaggtttgttctggttgaattattttccttttggctctgatt09/12/0806/18/09130Genomicunknown
ss1084644021000GENOMES|CEU.trio.12.15.2008_1117808_chr4_154112804fwd/TA/Gcttcaccttgctttccccgaggtttgttctggttgaattattttccttttggctctgatt12/15/0812/15/08130Genomicunknown
ss1108125411000GENOMES|NA19240_2008_12_16_1007022_chr4_154112804fwd/TA/Gcttcaccttgctttccccgaggtttgttctggttgaattattttccttttggctctgatt12/17/0812/17/08130Genomicunknown
ss117243236ILLUMINA-UK|NA18507_000203238_NCBI36.1_chr4_154112804fwd/TA/Gcttcaccttgctttccccgaggtttgttctggttgaattattttccttttggctctgatt01/18/0901/19/09130Genomic99 %
ss133300414ENSEMBL|ENSSNP2309433fwd/TA/Gcttcaccttgctttccccgaggtttgttctggttgaattattttccttttggctctgatt12/08/0810/15/09131Genomicunknown
ss139965166ENSEMBL|ENSSNP12698176fwd/TA/Gcttcaccttgctttccccgaggtttgttctggttgaattattttccttttggctctgatt05/18/0905/19/09131Genomicunknown
ss152930323ILLUMINA|Human610_Quadv1_B_rs11099864-127_B_R_1502084129rev/BC/Taatcagagccaaaaggaaaataattcaaccagaacaaacctcggggaaagcaaggtgaag06/18/0906/19/09131Genomicunknown
ss159163871ILLUMINA|Human660W-Quad_v1_A_rs11099864-128_B_R_1502084129rev/BC/Taatcagagccaaaaggaaaataattcaaccagaacaaacctcggggaaagcaaggtgaag07/06/0907/06/09131Genomicunknown
ss159957761ILLUMINA|HumanOmni1-Quad_v1-0_B_rs11099864-128_B_R_1502084129rev/BC/Taatcagagccaaaaggaaaataattcaaccagaacaaacctcggggaaagcaaggtgaag08/04/0910/01/09131Genomicunknown
ss162668549COMPLETE_GENOMICS|NA07022_36_chr4_154112804fwd/TA/Gcttcaccttgctttccccgaggtttgttctggttgaattattttccttttggctctgatt09/28/0909/29/09132Genomicunknown
ss164728819COMPLETE_GENOMICS|NA19240_36_chr4_154112804fwd/TA/Gcttcaccttgctttccccgaggtttgttctggttgaattattttccttttggctctgatt09/29/0909/30/09132Genomicunknown
ss167310950COMPLETE_GENOMICS|NA20431_36_chr4_154112804fwd/TA/Gcttcaccttgctttccccgaggtttgttctggttgaattattttccttttggctctgatt09/30/0909/30/09132Genomicunknown
ss169783132ILLUMINA|HumanCNV370-Quadv3_C_rs11099864-127_B_R_1502084129rev/BC/Taatcagagccaaaaggaaaataattcaaccagaacaaacctcggggaaagcaaggtgaag10/01/0910/02/09132Genomicunknown
ss171023941ILLUMINA|Human1M-Duov3_B_rs11099864-127_B_R_1502084129rev/BC/Taatcagagccaaaaggaaaataattcaaccagaacaaacctcggggaaagcaaggtgaag10/01/0910/01/09132Genomicunknown
ss199363815BUSHMAN|BUSHMAN-chr4-154112803byFreqfwd/TA/Gcttcaccttgctttccccgaggtttgttctggttgaattattttccttttggctctgatt02/16/1009/05/14132Genomicunknown
ss206259848BCM-HGSC-SUB|BCM_CMT_1011-786466fwd/TA/Gcttcaccttgctttccccgaggtttgttctggttgaattattttccttttggctctgatt03/15/1003/17/10132Genomicunknown
ss2212961571000GENOMES|pilot_1_YRI_3105840_chr4_154112804fwd/A/Gcttcaccttgctttccccgaggtttgttctggttgaattattttccttttggctctgatt04/22/1004/22/10132Genomicunknown
ss2326599831000GENOMES|pilot_1_CEU_2264612_chr4_154112804fwd/A/Gcttcaccttgctttccccgaggtttgttctggttgaattattttccttttggctctgatt05/01/1005/01/10132Genomicunknown
ss2398941171000GENOMES|pilot_1_CHB+JPT_1779194_chr4_154112804fwd/A/Gcttcaccttgctttccccgaggtttgttctggttgaattattttccttttggctctgatt05/01/1005/01/10132Genomicunknown
ss253634058BL|SNP166567_4_154112804fwd/TA/Gcttcaccttgctttccccgaggtttgttctggttgaattattttccttttggctctgatt08/18/1008/18/10134Genomicunknown
ss277994258GMI|GMI_AK_SNP_2314491fwd/A/Gcttcaccttgctttccccgaggtttgttctggttgaattattttccttttggctctgatt12/16/1012/16/10137Genomicunknown
ss285034443GMI|GMI_NA10851_SNP_1047216fwd/A/Gcttcaccttgctttccccgaggtttgttctggttgaattattttccttttggctctgatt12/17/1012/17/10138Genomicunknown
ss293227117PJP|SNP_2733475_chr4_154112804fwd/A/Gcttcaccttgctttccccgaggtttgttctggttgaattattttccttttggctctgatt01/21/1101/21/11134Genomicunknown
ss479461770ILLUMINA|HumanOmni2.5-4v1_B_rs11099864-128_B_R_1771437127fwd/TA/Gccttgctttccccgaggtttgttctggttgaattattttccttttggctc01/30/1210/28/16137Genomicunknown
ss479465692ILLUMINA|HumanOmniExpress-12v1_C_rs11099864-131_B_R_1857228834fwd/TA/Gccttgctttccccgaggtttgttctggttgaattattttccttttggctc01/30/1210/27/16137Genomicunknown
ss479897014ILLUMINA|HumanOmni1-Quad_v1-0_C_rs11099864-131_B_R_1857228834fwd/TA/Gccttgctttccccgaggtttgttctggttgaattattttccttttggctc01/30/1208/28/15146Genomicunknown
ss484530581ILLUMINA|HumanOmni2.5-4v1_D_rs11099864-131_B_R_1857228834fwd/TA/Gccttgctttccccgaggtttgttctggttgaattattttccttttggctc01/30/1210/28/16137Genomicunknown
ss491361532EXOME_CHIP|.GWAS._77759_chr_4_153893354fwd/TA/Gcttcaccttgctttccccgaggtttgttctggttgaattattttccttttggctctgatt03/05/1203/05/12137Genomicunknown
ss536673808ILLUMINA|HumanOmni5-4v1_B_rs11099864-131_B_R_1885470354fwd/TA/Gccttgctttccccgaggtttgttctggttgaattattttccttttggctc06/22/1208/28/15146Genomicunknown
ss557952845TISHKOFF|snp_chr4_153893354fwd/TA/Gccttgctttccccgaggtttgttctggttgaattattttccttttggctc11/22/1211/23/12138Genomicunknown
ss651773985SSMP|4_153893354fwd/TA/Gccttgctttccccgaggtttgttctggttgaattattttccttttggctc12/14/1202/10/15138Genomicunknown
ss778752251ILLUMINA|HumanOmni25Exome-8v1_A_rs11099864-131_B_R_1857228834fwd/TA/Gccttgctttccccgaggtttgttctggttgaattattttccttttggctc05/30/1307/09/15146Genomicunknown
ss780680936ILLUMINA|HumanOmni25Exome-8v1_A_exm-rs11099864-131_B_R_1990478416fwd/TA/Gccttgctttccccgaggtttgttctggttgaattattttccttttggctc05/30/1307/09/15146Genomicunknown
ss782711906ILLUMINA|HumanOmni2.5-4v1_H_rs11099864-131_B_R_1857228834fwd/TA/Gccttgctttccccgaggtttgttctggttgaattattttccttttggctc05/30/1307/28/15146Genomicunknown
ss783354232ILLUMINA|HumanOmniExpressExome-8v1_A_exm-rs11099864-131_B_R_1990478416fwd/TA/Gccttgctttccccgaggtttgttctggttgaattattttccttttggctc05/31/1306/19/15146Genomicunknown
ss783679670ILLUMINA|HumanOmniExpressExome-8v1_A_rs11099864-131_B_R_1885470354fwd/TA/Gccttgctttccccgaggtttgttctggttgaattattttccttttggctc05/31/1306/19/15146Genomicunknown
ss831963264ILLUMINA|HumanOmniExpress-12v1_H_rs11099864-131_B_R_1857228834fwd/TA/Gccttgctttccccgaggtttgttctggttgaattattttccttttggctc09/17/1306/18/15146Genomicunknown
ss834211927ILLUMINA|HumanOmni2.5-8v1_A_rs11099864-131_B_R_1857228834fwd/TA/Gccttgctttccccgaggtttgttctggttgaattattttccttttggctc09/18/1307/28/15146Genomicunknown
ss980846886EVA-GONL|EVA-GONL_rs11099864fwd/TA/Gccttgctttccccgaggtttgttctggttgaattattttccttttggctc04/23/1404/24/14142Genomicunknown
ss1072081708JMKIDD_LAB|HGDP_WGS_chr4_153893354fwd/TA/Gccttgctttccccgaggtttgttctggttgaattattttccttttggctc07/10/1407/11/14142Genomicunknown
ss13124563171000GENOMES|PHASE3_V1_24079121fwd/A/Gccttgctttccccgaggtttgttctggttgaattattttccttttggctc08/16/1408/16/14142Genomicunknown
ss1430102300DDI|DDI_rs11099864fwd/TA/Gccttgctttccccgaggtttgttctggttgaattattttccttttggctc11/04/1411/05/14144Genomicunknown
ss1580840720EVA_GENOME_DK|EVA_GENOME_DK_snv_rs11099864fwd/TA/Gccttgctttccccgaggtttgttctggttgaattattttccttttggctc02/19/1502/20/15144Genomicunknown
ss1590360129EVA_DECODE|EVA_DECODE_4_154112804_1204369_rs11099864fwd/TA/Gccttgctttccccgaggtttgttctggttgaattattttccttttggctc03/02/1503/03/15144Genomicunknown
ss1611509366EVA_UK10K_ALSPAC|EVA_UK10K_ALSPAC_4_153893354_13322161fwd/A/Gccttgctttccccgaggtttgttctggttgaattattttccttttggctc03/04/1503/04/15144Genomicunknown
ss1654503399EVA_UK10K_TWINSUK|EVA_UK10K_TWINSUK_4_153893354_13322161fwd/A/Gccttgctttccccgaggtttgttctggttgaattattttccttttggctc03/04/1503/04/15144Genomicunknown
ss1711073831EVA_MGP|EVA_XIMO_189591fwd/TA/Gccttgctttccccgaggtttgttctggttgaattattttccttttggctc03/09/1503/09/15144Genomicunknown
ss1712716656EVA_SVP|EVA_SVP_411023fwd/TA/Gccttgctttccccgaggtttgttctggttgaattattttccttttggctc03/12/1503/12/15144Genomicunknown
ss1752503317ILLUMINA|OmniExpressExome-8v1-1_B_exm-rs11099864-131_B_R_1990478416fwd/TA/Gccttgctttccccgaggtttgttctggttgaattattttccttttggctc05/27/1506/09/15146Genomicunknown
ss1917785485ILLUMINA|HumanExome-12v1-1_B_exm-rs11099864-131_B_R_1990478416fwd/TA/Gccttgctttccccgaggtttgttctggttgaattattttccttttggctc10/16/1510/16/15147Genomicunknown
ss1924086021WEILL_CORNELL_DGM|SNV:chr4:153893354fwd/TA/Gccttgctttccccgaggtttgttctggttgaattattttccttttggctc10/16/1510/17/15147Genomicunknown
ss1946130140ILLUMINA|HumanCoreExome-12v1-0_C_exm-rs11099864-131_B_R_1990478416fwd/TA/Gccttgctttccccgaggtttgttctggttgaattattttccttttggctc10/29/1510/29/15147Genomicunknown
ss1958730493ILLUMINA|exm-rs11099864-131_B_R_1990478416fwd/TA/Gccttgctttccccgaggtttgttctggttgaattattttccttttggctc11/13/1511/13/15147Genomicunknown
ss1958730494ILLUMINA|rs11099864-131_B_R_1885470354fwd/TA/Gccttgctttccccgaggtttgttctggttgaattattttccttttggctc11/13/1511/13/15147Genomicunknown
ss1969909019GENOMED|rs11099864fwd/TA/Gccttgctttccccgaggtttgttctggttgaattattttccttttggctc02/16/1602/16/16147Genomicunknown
ss2022628464JJLAB|SNP3131019fwd/TA/Gccttgctttccccgaggtttgttctggttgaattattttccttttggctc08/29/1608/30/16149Genomicunknown
ss2095150800ILLUMINA|InfiniumImmunoArray-24v2-0_A_rs11099864-138_B_R_2264353282fwd/TA/Gccttgctttccccgaggtttgttctggttgaattattttccttttggctc09/27/1609/27/16150Genomicunknown
ss2150761296USC_VALOUEV|NC_000004.11:g.153893354G>Afwd/A/Gccttgctttccccgaggtttgttctggttgaattattttccttttggctc11/17/1611/17/16150Genomicunknown
ss2268461925HUMAN_LONGEVITY|HLI-4-152972202-G-Afwd/A/Gccttgctttccccgaggtttgttctggttgaattattttccttttggctc11/18/1611/18/16150Genomicunknown
ss2436399465TOPMED|4_153893354_G/Afwd/A/Gccttgctttccccgaggtttgttctggttgaattattttccttttggctc11/20/1611/20/16150Genomicunknown
ss2625810158SYSTEMSBIOZJU|SYSTEMSBIOZJU_SNV1998217fwd/A/Gccttgctttccccgaggtttgttctggttgaattattttccttttggctc01/06/1701/06/17151Genomicunknown
ss2634195050ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_SoL-rs11099864-131_T_F_213fwd/A/Gccttgctttccccgaggtttgttctggttgaattattttccttttggctc02/02/1702/02/17151Genomicunknown
ss2634195051ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_rs11099864-131_B_R_1885470fwd/A/Gccttgctttccccgaggtttgttctggttgaattattttccttttggctc02/02/1702/02/17151Genomicunknown
ss2634195052ILLUMINA|SoL_HCHS_Custom_15041502_B3_RefStrand_seq-rs11099864-131_T_F_213fwd/A/Gccttgctttccccgaggtttgttctggttgaattattttccttttggctc02/02/1702/02/17151Genomicunknown
ss2706258881GRF|rs11099864fwd/A/Gccttgctttccccgaggtttgttctggttgaattattttccttttggctc02/13/1702/13/17151Genomicunknown
ss2711018820ILLUMINA|Consortium-OncoArray_15047405_A_rs11099864-131_B_R_1885470354fwd/A/Gccttgctttccccgaggtttgttctggttgaattattttccttttggctc03/22/1703/22/17151Genomicunknown
ss2817109567GNOMAD|rs11099864fwd/A/Gccttgctttccccgaggtttgttctggttgaattattttccttttggctc05/18/1705/18/17151Genomicunknown
ss2985306448AFFY|Axiom_PsorMich_Affx-23668432fwd/A/Gccttgctttccccgaggtttgttctggttgaattattttccttttggctc05/24/1705/24/17151Genomicunknown
ss2995814273SWEGEN|NC_000004.11:g.153893354G>Afwd/A/Gccttgctttccccgaggtttgttctggttgaattattttccttttggctc05/30/1705/30/17151Genomicunknown
ss3022427166ILLUMINA|MEGA_Consortium_v2_15070954_A2_exm-rs11099864-131_B_R_1990478416fwd/A/Gccttgctttccccgaggtttgttctggttgaattattttccttttggctc06/28/1706/28/17151Genomicunknown
ss3022427167ILLUMINA|MEGA_Consortium_v2_15070954_A2_rs11099864-138_B_R_2264353282fwd/A/Gccttgctttccccgaggtttgttctggttgaattattttccttttggctc06/28/1706/28/17151Genomicunknown
ss3025091028BIOINF_KMB_FNS_UNIBA|4.152972202G>Afwd/A/Gccttgctttccccgaggtttgttctggttgaattattttccttttggctc07/05/1707/05/17151Genomicunknown
ss3346034130CSHL|rs11099864fwd/A/Gccttgctttccccgaggtttgttctggttgaattattttccttttggctc10/02/1710/02/17151Genomicunknown
ss3447017104TOPMED|TOPMed_freeze_5?chr4:152,972,202fwd/A/Gccttgctttccccgaggtttgttctggttgaattattttccttttggctc10/04/1710/04/17151Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs11099864|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='A/G'|mol=Genomic|build=151
 CCATCAGAAT CTCCTGGGGT GGTGCTTTCA GAAAATATTA GTGTTGGGTC CACCCCAAAC
 CTGTGAAATC GAACGGGAGG AATACAGGCA TGGCCTGTTG CCAAGCTTCC CAGCTGACTT
 GGATCAGCAC CCCGGGTTTA GGCACGAGGG TTTTGGTCCT GTGGGGGTGA CCCTGACCCT
 CACAGAGCTC ATTTGGGATT AAGCTTAGAC ACCCTCTCAG TGGGGCAAAA TTGATAATGC
 ATCAGTAGAG CGAGTAGCTT CAGGGACCCT AAAGTAAACT CTTGACCAGT GTAAGACTCA
 ATTTTAAGAG GAAGAAGAAC AGATGCAAAA TGGATCTTCC TTGGTAAAAA CCAGTTGTAT
 ACCTGTGTAA TTTTTTTCAG TGACATTAAA AGTGAACATT TTGTTAGTGA CGTTCTGCAG
 GTTAAAGTTC TTAAATCTAT CTTGTTGCTT AGTCTAGGTC TCACACGGGA CTTCACCTTG
 CTTTCCCCGA GGTTTGTTCT
 R
 GGTTGAATTA TTTTCCTTTT GGCTCTGATT GCATTGGCCT TGCAATAAAC CTTCCTTTTC
 CAAGACCTGA AATGAAACCC CAGAGCACGT CTTCTCTGGG CACCGGATGC AGTGCCCAGC
 GCCGCCTCAG CTGACAACGT TTACCTCAGT GTGTGTTCGT TTGTTTTTCC GCAGTTTGCC
 ATAGAAAAGC TGAGGGAACT GGAATGCTGG AAACAAGAGC TCCAGGATGA GGCCTACACC
 CTTATAGATT TTTTCTGTGA AGACAAAAAA ACCATGAAAC TGGATGAATG CTTTCAGATA
 TTTAGAGATT TCTGTACCAA ATTCAACAAA GCAGTTAAGG TACATCTGGC AGCATCTGTG
 TCTTGGGGTT GTTTGGATTT TTATTTTCCT TCTTCTCGAC CTAGTCATCT GCTCACCACA
 GAAAGGCACT TTGCATCTCC ACGGTTTCGG GGACATCTGG CCCAGGTGGT ATTGCCAGGC
 TCTCGGCTGG GATTGCTGGA

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_016606 ABBA01070129
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) . See additional population frequency from 1000Genome [here] back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceA/A
A/G
G/G
HWPA
G
ss117243236YRI 2IG 1.00000000 0.500000000.50000000
ss1312456317EAS 1008AF 0.533699990.46629998
EUR 1006AF 0.766400040.23360001
AFR 1322AF 0.141500000.85850000
AMR 694AF 0.596500040.40349999
SAS 978AF 0.509199980.49080002
ss133300414ENSEMBL_Venter 2IG 1.00000000 0.500000000.50000000
ENSEMBL_celera 2IG1.00000000 1.00000000
ss139965166ENSEMBL_Watson 2IG1.00000000 1.00000000
ss162668549CEUEuropean 2IG1.00000000 1.00000000
ss164728819YRISub-Saharan African 2IG 1.00000000 0.500000000.50000000
ss167310950PGP 2IG1.00000000 1.00000000
ss199363815BUSHMAN_POP 2IG 1.00000000 0.500000000.50000000
BANTU 2IG 1.00000000 0.500000000.50000000
ss221296157pilot_1_YRI_low_coverage_panel 118AF 0.093220340.90677965
ss232659983pilot_1_CEU_low_coverage_panel 120AF 0.733333350.26666668
ss239894117pilot_1_CHB+JPT_low_coverage_panel 120AF 0.500000000.50000000
ss24152382AFD_EUR_PANELEuropean 48IG0.375000000.500000000.125000000.751830000.625000000.37500000
AFD_AFR_PANELAfrican American 46IG 0.565217380.434782590.200325000.282608690.71739131
AFD_CHN_PANELAsian 46IG0.173913050.652173940.173913050.150222000.500000000.50000000
ss42341575HapMap-CEUEuropean 226IG0.539823000.407079640.053097340.479500000.743362840.25663716
HapMap-HCBAsian 86IG0.255813960.488372090.255813961.000000000.500000000.50000000
HapMap-JPTAsian 172IG0.325581400.453488380.220930230.479500000.552325610.44767442
HapMap-YRISub-Saharan African 226IG0.017699110.168141590.814159270.402784000.101769910.89823008
HAPMAP-ASW 98IG0.061224490.367346940.571428601.000000000.244897960.75510204
HAPMAP-CHBAsian 82IG0.365853670.512195110.121951220.583882000.621951220.37804878
HAPMAP-CHD 170IG0.341176480.447058830.211764710.438578000.564705910.43529412
HAPMAP-GIH 176IG0.215909090.488636370.295454531.000000000.460227280.53977275
HAPMAP-LWK 180IG0.033333340.277777790.688888911.000000000.172222230.82777780
HAPMAP-MEX 100IG0.380000000.460000010.160000001.000000000.610000010.38999999
HAPMAP-MKK 286IG0.055944060.419580430.524475510.371093000.265734260.73426574
HAPMAP-TSI 176IG0.681818190.261363630.056818180.200325000.812500000.18750000
ss68914886HapMap-CEUEuropean 120IG0.583333310.349999990.066666670.751830000.758333330.24166666
HapMap-HCBAsian 90IG0.244444440.511111140.244444441.000000000.500000000.50000000
HapMap-JPTAsian 90IG0.333333340.422222230.244444440.342782000.544444440.45555556
HapMap-YRISub-Saharan African 120IG 0.216666670.783333360.751830000.108333330.89166665
ss99022355J. Craig Venter 2IG 1.00000000 0.500000000.50000000

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
Additional Freq. Data
0.499+/-0.0190000ALFRED: The Allele Frequency Database

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqwith2hitwithHapMapFreqWith1000GenomeData
DoubleHit found by:  BCM_SSAHASNP
UNKNOWNUNKNOWNUNKNOWN

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